Published in J Mol Evol on January 01, 1994
Structural constraints on RNA virus evolution. J Virol (1999) 2.24
Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus. RNA (2002) 2.20
Evidence for a new hepatitis C virus antigen encoded in an overlapping reading frame. RNA (2001) 2.17
Synthesis of a novel hepatitis C virus protein by ribosomal frameshift. EMBO J (2001) 2.03
A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades. Proc Natl Acad Sci U S A (2002) 2.02
Bats are a major natural reservoir for hepaciviruses and pegiviruses. Proc Natl Acad Sci U S A (2013) 1.93
Evolution of the feline-subgroup parvoviruses and the control of canine host range in vivo. J Virol (1995) 1.74
Evidence for a functional RNA element in the hepatitis C virus core gene. Proc Natl Acad Sci U S A (2007) 1.64
The mode and tempo of hepatitis C virus evolution within and among hosts. BMC Evol Biol (2011) 1.46
Molecular evolution of hepatitis B virus over 25 years. J Virol (2006) 1.39
Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus. J Virol (1997) 1.25
Mutation Master: profiles of substitutions in hepatitis C virus RNA of the core, alternate reading frame, and NS2 coding regions. RNA (2002) 1.13
Role of the hepatitis C virus core+1 open reading frame and core cis-acting RNA elements in viral RNA translation and replication. J Virol (2008) 1.04
Internal initiation stimulates production of p8 minicore, a member of a newly discovered family of hepatitis C virus core protein isoforms. J Virol (2009) 1.01
Mapping overlapping functional elements embedded within the protein-coding regions of RNA viruses. Nucleic Acids Res (2014) 0.99
Evaluation of accumulation of hepatitis C virus mutations in a chronically infected chimpanzee: comparison of the core, E1, HVR1, and NS5b regions. J Virol (2001) 0.90
Selection on the genes of Euplotes crassus Tec1 and Tec2 transposons: evolutionary appearance of a programmed frameshift in a Tec2 gene encoding a tyrosine family site-specific recombinase. Eukaryot Cell (2003) 0.89
Structural analysis of hepatitis C RNA genome using DNA microarrays. Nucleic Acids Res (2004) 0.88
Unexpected maintenance of hepatitis C viral diversity following liver transplantation. J Virol (2012) 0.86
Genetic divergence of hepatitis C virus: the role of HIV-related immunosuppression. J Acquir Immune Defic Syndr (2008) 0.85
Similar prevalence of low-abundance drug-resistant variants in treatment-naive patients with genotype 1a and 1b hepatitis C virus infections as determined by ultradeep pyrosequencing. PLoS One (2014) 0.82
Hepatitis C hypervariable region 1: association of reduced selection pressure in african americans with treatment failure. Dig Dis Sci (2007) 0.75
The transcriptional landscape of the mammalian genome. Science (2005) 37.63
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol (1986) 36.06
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature (2002) 28.79
Functional annotation of a full-length mouse cDNA collection. Nature (2001) 23.61
DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams. Nucleic Acids Res (2000) 15.69
DNA Data Bank of Japan dealing with large-scale data submission. Nucleic Acids Res (1999) 10.26
Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Res (2000) 7.88
DDBJ in the stream of various biological data. Nucleic Acids Res (2004) 6.24
Large-scale search for genes on which positive selection may operate. Mol Biol Evol (1996) 6.14
DDBJ with new system and face. Nucleic Acids Res (2007) 5.33
Codon usage tabulated from the GenBank genetic sequence data. Nucleic Acids Res (1986) 4.83
Significance of serum hepatitis C virus RNA levels in chronic hepatitis C. Lancet (1993) 4.51
DNA Data Bank of Japan at work on genome sequence data. Nucleic Acids Res (1998) 4.43
Pseudogenes as a paradigm of neutral evolution. Nature (1981) 4.33
Complete nucleotide sequence of an infectious clone of human T-cell leukemia virus type II: an open reading frame for the protease gene. Proc Natl Acad Sci U S A (1985) 4.28
Codon usage tabulated from the GenBank Genetic Sequence Data. Nucleic Acids Res (1988) 4.26
DNA Data Bank of Japan (DDBJ) in XML. Nucleic Acids Res (2003) 3.87
Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: proposals for standardization. International Committee on Virus Taxonomy. Arch Virol (1998) 3.77
DNA Data Bank of Japan (DDBJ) for genome scale research in life science. Nucleic Acids Res (2002) 3.64
A method for detecting positive selection at single amino acid sites. Mol Biol Evol (1999) 3.58
Codon usage tabulated from the GenBank genetic sequence data. Nucleic Acids Res (1990) 3.54
Estimation of average number of nucleotide substitutions when the rate of substitution varies with nucleotide. J Mol Evol (1982) 3.45
Patterns of nucleotide substitution in pseudogenes and functional genes. J Mol Evol (1982) 3.43
DDBJ in collaboration with mass-sequencing teams on annotation. Nucleic Acids Res (2005) 3.14
Evolutionary motif and its biological and structural significance. J Mol Evol (1997) 3.03
Codon usage tabulated from the GenBank genetic sequence data. Nucleic Acids Res (1991) 3.01
Codon usage tabulated from the GenBank genetic sequence data. Nucleic Acids Res (1992) 2.95
A case-control study for clinical and molecular biological differences between hepatitis B viruses of genotypes B and C. Japan HBV Genotype Research Group. Hepatology (2001) 2.80
New hepatitis C virus (HCV) genotyping system that allows for identification of HCV genotypes 1a, 1b, 2a, 2b, 3a, 3b, 4, 5a, and 6a. J Clin Microbiol (1997) 2.78
Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. Mol Biol Evol (1999) 2.68
Geographic distribution of hepatitis B virus (HBV) genotype in patients with chronic HBV infection in Japan. Hepatology (2001) 2.62
Molecular cloning and expression of a member of the aquaporin family with permeability to glycerol and urea in addition to water expressed at the basolateral membrane of kidney collecting duct cells. Proc Natl Acad Sci U S A (1994) 2.54
Hepatitis C virus infection in patients with B-cell non-Hodgkin lymphoma. Ann Intern Med (1997) 2.45
Sequence of a novel simian immunodeficiency virus from a wild-caught African mandrill. Nature (1989) 2.45
Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts. Proc Natl Acad Sci U S A (1997) 2.35
Genome plasticity as a paradigm of eubacteria evolution. J Mol Evol (1997) 2.29
Monophyletic origin and unique dispersal patterns of domestic fowls. Proc Natl Acad Sci U S A (1996) 2.27
Rates of evolution of the retroviral oncogene of Moloney murine sarcoma virus and of its cellular homologues. Proc Natl Acad Sci U S A (1985) 2.25
Discrepancy between biochemical and virological responses to interferon-alpha in chronic hepatitis C. Lancet (1993) 2.23
Mitochondrial DNA polymorphism in Japanese. I. Analysis with restriction enzymes of six base pair recognition. Hum Genet (1984) 2.17
Significance of antibody to the host cellular gene derived epitope GOR in chronic hepatitis C virus infection. J Hepatol (1993) 2.12
Codon usage tabulated from the international DNA sequence databases. Nucleic Acids Res (1997) 2.10
Application of six hepatitis C virus genotyping systems to sera from chronic hepatitis C patients in the United States. J Infect Dis (1995) 2.07
Mitochondrial DNA polymorphism among five Asian populations. Am J Hum Genet (1988) 1.86
Evolutionary origin of pathogenic determinants in enterotoxigenic Escherichia coli and Vibrio cholerae O1. J Bacteriol (1987) 1.80
Host-independent evolution and a genetic classification of the hepadnavirus family based on nucleotide sequences. Proc Natl Acad Sci U S A (1989) 1.76
Beta-catenin accumulation and mutation of exon 3 of the beta-catenin gene in hepatocellular carcinoma. Jpn J Cancer Res (1999) 1.71
A novel variant genotype C of hepatitis B virus identified in isolates from Australian Aborigines: complete genome sequence and phylogenetic relatedness. J Gen Virol (2001) 1.67
Hepatitis B virus genotype distribution among chronic hepatitis B virus carriers in Shanghai, China. Intervirology (2001) 1.65
Molecular evolution of hemagglutinin genes of H1N1 swine and human influenza A viruses. J Mol Evol (1991) 1.63
Tracing hepatitis C and Delta viruses to estimate their contribution in HCC rates in Mongolia. J Viral Hepat (2007) 1.62
Dynamics of genome change in the E2/NS1 region of hepatitis C virus in vivo. Virology (1993) 1.60
Rates of synonymous substitution and base composition of nuclear genes in Drosophila. Genetics (1992) 1.57
Distribution of hepatitis C virus genotypes determined by line probe assay in patients with chronic hepatitis C seen at tertiary referral centers in the United States. Hepatitis Interventional Therapy Group. Ann Intern Med (1996) 1.56
Statistical analysis of nucleotide sequences of the hemagglutinin gene of human influenza A viruses. Proc Natl Acad Sci U S A (1994) 1.55
Rapid evolution of goat and sheep globin genes following gene duplication. Mol Biol Evol (1983) 1.52
Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes. J Virol (2000) 1.51
The origin and evolution of Ebola and Marburg viruses. Mol Biol Evol (1997) 1.50
Molecular phylogeny and evolution of primate mitochondrial DNA. Mol Biol Evol (1988) 1.49
Codon usage tabulated from the international DNA sequence databases. Nucleic Acids Res (1996) 1.49
ODEN: a program package for molecular evolutionary analysis and database search of DNA and amino acid sequences. Comput Appl Biosci (1994) 1.49
Constrained evolution with respect to gene overlap of hepatitis B virus. J Mol Evol (1997) 1.49
Simple fluorescent enzyme immunoassay for detection and quantification of hepatitis C viremia. J Hepatol (1995) 1.44
Hepatitis G virus in immunosuppressed paediatric allograft recipients. Lancet (1996) 1.40
ADAPTSITE: detecting natural selection at single amino acid sites. Bioinformatics (2001) 1.40
Genomic and molecular evolutionary analysis of a newly identified infectious agent (SEN virus) and its relationship to the TT virus family. J Infect Dis (2000) 1.37
Changes in titers of antimitochondrial and antinuclear antibodies during the course of primary biliary cirrhosis. J Gastroenterol Hepatol (2001) 1.37
Stromal cell-derived factor-1 and CXCR4 receptor interaction in tumor growth and metastasis of breast cancer. Biomed Pharmacother (2006) 1.31
Development of a TT virus DNA quantification system using real-time detection PCR. J Clin Microbiol (2000) 1.29
Codon usage tabulated from the international DNA sequence databases; its status 1999. Nucleic Acids Res (1999) 1.29
Codon and base biases after the initiation codon of the open reading frames in the Escherichia coli genome and their influence on the translation efficiency. J Biochem (2001) 1.29
Serum hepatitis C virus RNA level as a predictor of subsequent response to interferon-alpha therapy in Japanese patients with chronic hepatitis C. J Med Virol (1994) 1.27
Cellular and humoral immune reactions against autoantigens and hepatitis C viral antigens in chronic hepatitis C. Gastroenterology (1994) 1.27
Recombinational hotspot specific to female meiosis in the mouse major histocompatibility complex. Immunogenetics (1990) 1.26
Molecular cloning and characterization of a novel glycoprotein, gp34, that is specifically induced by the human T-cell leukemia virus type I transactivator p40tax. Mol Cell Biol (1991) 1.24
Human cytomegalovirus glycoprotein N (gpUL73-gN) genomic variants: identification of a novel subgroup, geographical distribution and evidence of positive selective pressure. J Gen Virol (2003) 1.24
SNP profile within the human major histocompatibility complex reveals an extreme and interrupted level of nucleotide diversity. Genome Res (2000) 1.24
Molecular phytogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes. Theor Appl Genet (1995) 1.23
Evolutionary relationship of hepatitis C, pesti-, flavi-, plantviruses, and newly discovered GB hepatitis agents. FEBS Lett (1996) 1.23
Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA. Mol Genet Genomics (2001) 1.22
Hibernation-associated gene regulation of plasma proteins with a collagen-like domain in mammalian hibernators. Mol Cell Biol (1993) 1.21
Management of pancreatic arteriovenous malformation. J Hepatobiliary Pancreat Surg (2000) 1.20
Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex. Mol Cell Biol (1997) 1.20
Intragenic recombinations in rotaviruses. FEBS Lett (1998) 1.20
New genotypes of TT virus (TTV) and a genotyping assay based on restriction fragment length polymorphism. FEBS Lett (1998) 1.20
Evolutionary aspects of gobioid fishes based upon a phylogenetic analysis of mitochondrial cytochrome B genes. Gene (2000) 1.19
NRSub: a non-redundant data base for the Bacillus subtilis genome. Nucleic Acids Res (1994) 1.19
Quantification of serum hepatitis C virus core protein level in patients chronically infected with different hepatitis C virus genotypes. Gut (1996) 1.18
Antigenicities of Group I and II hepatitis C virus polypeptides--molecular basis of diagnosis. Virology (1993) 1.17
Difference of hepatitis B virus genotype distribution in two groups of mexican patients with different risk factors. High prevalence of genotype H and G. Intervirology (2006) 1.15
Establishment of a phylogenetic survey system for AIDS-related lentiviruses and demonstration of a new HIV-2 subgroup. AIDS (1990) 1.14