Published in Comput Appl Biosci on October 01, 1995
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics (2004) 50.89
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res (2002) 47.62
MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol (2013) 34.34
MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res (2005) 31.64
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res (2001) 22.33
OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy. BMC Bioinformatics (2003) 4.01
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics (2008) 3.55
The accuracy of several multiple sequence alignment programs for proteins. BMC Bioinformatics (2006) 2.52
Two new members of the murine Sim gene family are transcriptional repressors and show different expression patterns during mouse embryogenesis. Mol Cell Biol (1996) 1.69
PSI-BLAST pseudocounts and the minimum description length principle. Nucleic Acids Res (2008) 1.68
The construction and use of log-odds substitution scores for multiple sequence alignment. PLoS Comput Biol (2010) 1.54
IS4 family goes genomic. BMC Evol Biol (2008) 1.09
Constructing a meaningful evolutionary average at the phylogenetic center of mass. BMC Bioinformatics (2007) 1.02
An assessment of substitution scores for protein profile-profile comparison. Bioinformatics (2011) 0.85
The identification and functional characterization of WxL proteins from Enterococcus faecium reveal surface proteins involved in extracellular matrix interactions. J Bacteriol (2014) 0.82
Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost. BMC Bioinformatics (2006) 0.79
Combinatorial motif analysis of regulatory gene expression in Mafb deficient macrophages. BMC Syst Biol (2011) 0.75