Published in Prog Nucleic Acid Res Mol Biol on January 01, 1996
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol (2008) 4.40
Role of the DIS hairpin in replication of human immunodeficiency virus type 1. J Virol (1996) 2.87
Functional differences between the long terminal repeat transcriptional promoters of human immunodeficiency virus type 1 subtypes A through G. J Virol (2000) 2.65
Two alternating structures of the HIV-1 leader RNA. RNA (2001) 2.47
A hairpin structure in the R region of the human immunodeficiency virus type 1 RNA genome is instrumental in polyadenylation site selection. J Virol (1999) 1.91
A conserved hairpin motif in the R-U5 region of the human immunodeficiency virus type 1 RNA genome is essential for replication. J Virol (1997) 1.91
Structural determinants and mechanism of HIV-1 genome packaging. J Mol Biol (2011) 1.83
The leader of human immunodeficiency virus type 1 genomic RNA harbors an internal ribosome entry segment that is active during the G2/M phase of the cell cycle. J Virol (2003) 1.71
Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography. J Mol Biol (2010) 1.71
Mutations in the kissing-loop hairpin of human immunodeficiency virus type 1 reduce viral infectivity as well as genomic RNA packaging and dimerization. J Virol (1997) 1.68
Nonreciprocal packaging of human immunodeficiency virus type 1 and type 2 RNA: a possible role for the p2 domain of Gag in RNA encapsidation. J Virol (1998) 1.64
The leader of the HIV-1 RNA genome forms a compactly folded tertiary structure. RNA (2000) 1.63
RNA structure and packaging signals in the 5' leader region of the human immunodeficiency virus type 1 genome. J Virol (2002) 1.60
Is HIV-1 RNA dimerization a prerequisite for packaging? Yes, no, probably? Retrovirology (2004) 1.59
Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions. Nucleic Acids Res (1998) 1.55
The tRNA primer activation signal in the human immunodeficiency virus type 1 genome is important for initiation and processive elongation of reverse transcription. J Virol (2002) 1.40
Functional analysis of the core human immunodeficiency virus type 1 packaging signal in a permissive cell line. J Virol (1998) 1.38
The dimer initiation sequence stem-loop of human immunodeficiency virus type 1 is dispensable for viral replication in peripheral blood mononuclear cells. J Virol (2003) 1.37
A novel approach to describe a U1 snRNA binding site. Nucleic Acids Res (2003) 1.35
Proteolytic processing of the p2/nucleocapsid cleavage site is critical for human immunodeficiency virus type 1 RNA dimer maturation. J Virol (2001) 1.33
A riboswitch regulates RNA dimerization and packaging in human immunodeficiency virus type 1 virions. J Virol (2004) 1.30
Genetic dissociation of the encapsidation and reverse transcription functions in the 5' R region of human immunodeficiency virus type 1. J Virol (1999) 1.29
Mechanisms employed by retroviruses to exploit host factors for translational control of a complicated proteome. Retrovirology (2009) 1.29
Dimerization and template switching in the 5' untranslated region between various subtypes of human immunodeficiency virus type 1. J Virol (2003) 1.26
The 5' and 3' TAR elements of human immunodeficiency virus exert effects at several points in the virus life cycle. J Virol (1998) 1.25
Regulated HIV-2 RNA dimerization by means of alternative RNA conformations. Nucleic Acids Res (2002) 1.20
Identification of a minimal region of the HIV-1 5'-leader required for RNA dimerization, NC binding, and packaging. J Mol Biol (2012) 1.14
Probing alternative foldings of the HIV-1 leader RNA by antisense oligonucleotide scanning arrays. Nucleic Acids Res (2004) 1.12
The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus. Retrovirology (2012) 1.10
An RNA structural switch regulates diploid genome packaging by Moloney murine leukemia virus. J Mol Biol (2009) 1.10
MS3D structural elucidation of the HIV-1 packaging signal. Proc Natl Acad Sci U S A (2008) 1.10
Forced evolution of a regulatory RNA helix in the HIV-1 genome. Nucleic Acids Res (1997) 1.07
Resolving fast and slow motions in the internal loop containing stem-loop 1 of HIV-1 that are modulated by Mg2+ binding: role in the kissing-duplex structural transition. Nucleic Acids Res (2007) 1.06
The conformation of the mature dimeric human immunodeficiency virus type 1 RNA genome requires packaging of pol protein. J Virol (2002) 1.02
A conserved structure within the HIV gag open reading frame that controls translation initiation directly recruits the 40S subunit and eIF3. Nucleic Acids Res (2010) 1.02
Mutations in the TAR hairpin affect the equilibrium between alternative conformations of the HIV-1 leader RNA. Nucleic Acids Res (2001) 1.02
A structured RNA motif is involved in correct placement of the tRNA(3)(Lys) primer onto the human immunodeficiency virus genome. J Virol (2000) 1.02
A structural linkage between the dimerization and encapsidation signals in HIV-2 leader RNA. RNA (2003) 1.01
Potential intra- and intermolecular interactions involving the unique-5' region of the HIV-1 5'-UTR. Biochemistry (2008) 1.01
The activity of the HIV-1 IRES is stimulated by oxidative stress and controlled by a negative regulatory element. Nucleic Acids Res (2010) 1.00
Ribosomal scanning on the 5'-untranslated region of the human immunodeficiency virus RNA genome. Nucleic Acids Res (2011) 0.99
Stabilization of the U5-leader stem in the HIV-1 RNA genome affects initiation and elongation of reverse transcription. Nucleic Acids Res (2000) 0.99
Activity of the human immunodeficiency virus type 1 cell cycle-dependent internal ribosomal entry site is modulated by IRES trans-acting factors. Nucleic Acids Res (2011) 0.99
HIV-1 sequence evolution in vivo after superinfection with three viral strains. Retrovirology (2007) 0.98
An extended stem-loop 1 is necessary for human immunodeficiency virus type 2 replication and affects genomic RNA encapsidation. J Virol (2007) 0.97
Role of HIV-1 RNA and protein determinants for the selective packaging of spliced and unspliced viral RNA and host U6 and 7SL RNA in virus particles. Nucleic Acids Res (2011) 0.97
The primer binding site on the RNA genome of human and simian immunodeficiency viruses is flanked by an upstream hairpin structure. Nucleic Acids Res (1997) 0.97
Kissing complex-mediated dimerisation of HIV-1 RNA: coupling extended duplex formation to ribozyme cleavage. Nucleic Acids Res (2003) 0.96
Optimal translation initiation enables Vif-deficient human immunodeficiency virus type 1 to escape restriction by APOBEC3G. J Virol (2009) 0.95
Retrovirus translation initiation: Issues and hypotheses derived from study of HIV-1. Curr HIV Res (2006) 0.95
The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA. Nucleic Acids Res (2011) 0.94
Different effects of the TAR structure on HIV-1 and HIV-2 genomic RNA translation. Nucleic Acids Res (2011) 0.94
Destabilization of the TAR hairpin affects the structure and function of the HIV-1 leader RNA. Nucleic Acids Res (2008) 0.94
Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of Psi-RNA. Nucleic Acids Res (2006) 0.93
Three-dimensional RNA structure of the major HIV-1 packaging signal region. Structure (2013) 0.91
Solution structure of the Rous sarcoma virus nucleocapsid protein: muPsi RNA packaging signal complex. J Mol Biol (2006) 0.90
Deletion mutagenesis downstream of the 5' long terminal repeat of human immunodeficiency virus type 1 is compensated for by point mutations in both the U5 region and gag gene. J Virol (2000) 0.90
A plant virus replication system to assay the formation of RNA pseudotriloop motifs in RNA-protein interactions. Proc Natl Acad Sci U S A (2003) 0.90
Optimal Tat-mediated activation of the HIV-1 LTR promoter requires a full-length TAR RNA hairpin. Nucleic Acids Res (1997) 0.89
Circularization of the HIV-1 genome facilitates strand transfer during reverse transcription. RNA (2010) 0.89
Dynamics of HIV-1 RNA Near the Plasma Membrane during Virus Assembly. J Virol (2015) 0.89
Primary T-lymphocytes rescue the replication of HIV-1 DIS RNA mutants in part by facilitating reverse transcription. Nucleic Acids Res (2008) 0.88
Induction of innate immune responses by SIV in vivo and in vitro: differential expression and function of RIG-I and MDA5. J Infect Dis (2011) 0.87
Few mutations in the 5' leader region mediate fitness recovery of debilitated human immunodeficiency type 1 viruses. J Virol (2005) 0.86
Sequences in the 5' and 3' R elements of human immunodeficiency virus type 1 critical for efficient reverse transcription. J Virol (2000) 0.86
The availability of the primer activation signal (PAS) affects the efficiency of HIV-1 reverse transcription initiation. Nucleic Acids Res (2007) 0.86
The A-nucleotide preference of HIV-1 in the context of its structured RNA genome. RNA Biol (2012) 0.86
A human immunodeficiency virus type 1-infected individual with low viral load harbors a virus variant that exhibits an in vitro RNA dimerization defect. J Virol (2004) 0.86
Initiation of HIV Reverse Transcription. Viruses (2010) 0.85
A 5'UTR-spliced mRNA isoform is specialized for enhanced HIV-2 gag translation. J Mol Biol (2009) 0.85
Functional and structural analysis of the internal ribosome entry site present in the mRNA of natural variants of the HIV-1. PLoS One (2012) 0.84
The 5' UTR of HIV-1 full-length mRNA and the Tat viral protein modulate the programmed -1 ribosomal frameshift that generates HIV-1 enzymes. RNA (2012) 0.84
Opening of the TAR hairpin in the HIV-1 genome causes aberrant RNA dimerization and packaging. Retrovirology (2012) 0.84
Cell type specificity and structural determinants of IRES activity from the 5' leaders of different HIV-1 transcripts. Nucleic Acids Res (2013) 0.84
Regulation of host gene expression by HIV-1 TAR microRNAs. Retrovirology (2013) 0.83
Conserved determinants of lentiviral genome dimerization. Retrovirology (2015) 0.83
Implications of the nucleocapsid and the microenvironment in retroviral reverse transcription. Viruses (2010) 0.83
Structural dynamics of retroviral genome and the packaging. Front Microbiol (2011) 0.83
Damaging the Integrated HIV Proviral DNA with TALENs. PLoS One (2015) 0.83
Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain. Nucleic Acids Res (2015) 0.82
On the role of four small hairpins in the HIV-1 RNA genome. RNA Biol (2013) 0.82
Regulation of primate lentiviral RNA dimerization by structural entrapment. Retrovirology (2008) 0.82
Genetically stable picornavirus expression vectors with recombinant internal ribosomal entry sites. J Virol (2002) 0.82
RNA dimerization plays a role in ribosomal frameshifting of the SARS coronavirus. Nucleic Acids Res (2012) 0.82
A cis-acting element present within the Gag open reading frame negatively impacts on the activity of the HIV-1 IRES. PLoS One (2013) 0.80
Probing Retroviral and Retrotransposon Genome Structures: The "SHAPE" of Things to Come. Mol Biol Int (2012) 0.80
Encapsidation determinants located downstream of the major splice donor in the maedi-visna virus leader region. J Virol (2006) 0.79
Selective inhibition of cell-free translation by oligonucleotides targeted to a mRNA hairpin structure. Nucleic Acids Res (1998) 0.79
HIV-1 Vpr N-terminal tagging affects alternative splicing of the viral genome. Sci Rep (2016) 0.78
The Interaction between tRNA(Lys) 3 and the primer activation signal deciphered by NMR spectroscopy. PLoS One (2013) 0.78
Upstream AUG codons in the simian immunodeficiency virus SIVmac239 genome regulate Rev and Env protein translation. J Virol (2012) 0.78
Efficient HIV-1 inhibition by a 16 nt-long RNA aptamer designed by combining in vitro selection and in silico optimisation strategies. Sci Rep (2014) 0.78
Viral SELEX reveals individual and cooperative roles of the C-box and G-box in HIV-2 replication. RNA (2011) 0.77
Binding characteristics of small molecules that mimic nucleocapsid protein-induced maturation of stem-loop 1 of HIV-1 RNA. Biochemistry (2010) 0.77
HIV-1 Pr55(Gag) binds genomic and spliced RNAs with different affinity and stoichiometry. RNA Biol (2016) 0.77
Variation of human immunodeficiency virus type-1 reverse transcriptase within the simian immunodeficiency virus genome of RT-SHIV. PLoS One (2014) 0.77
Translation initiation of the HIV-1 mRNA. Translation (Austin) (2014) 0.76
Translational Control of the HIV Unspliced Genomic RNA. Viruses (2015) 0.76
An intact U5-leader stem is important for efficient replication of simian immunodeficiency virus. J Virol (2001) 0.76
Internal translation initiation from HIV-1 transcripts is conferred by a common RNA structure. Translation (Austin) (2014) 0.76