Published in Trends Biochem Sci on September 01, 1997
PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol Mol Biol Rev (1999) 10.69
Measuring genome evolution. Proc Natl Acad Sci U S A (1998) 6.97
Stimulus perception in bacterial signal-transducing histidine kinases. Microbiol Mol Biol Rev (2006) 4.12
LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide. Proc Natl Acad Sci U S A (1999) 3.85
Two-component signal transduction in Bacillus subtilis: how one organism sees its world. J Bacteriol (1999) 3.42
Structure of a flavin-binding plant photoreceptor domain: insights into light-mediated signal transduction. Proc Natl Acad Sci U S A (2001) 3.33
Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry. Proc Natl Acad Sci U S A (1998) 3.32
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The Aer protein and the serine chemoreceptor Tsr independently sense intracellular energy levels and transduce oxygen, redox, and energy signals for Escherichia coli behavior. Proc Natl Acad Sci U S A (1997) 2.97
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The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. PLoS Biol (2006) 2.43
Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiol Mol Biol Rev (2004) 2.38
Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily. Proc Natl Acad Sci U S A (1998) 2.26
Analysis of FimX, a phosphodiesterase that governs twitching motility in Pseudomonas aeruginosa. Mol Microbiol (2006) 2.22
Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii. Biophys J (2003) 2.08
FimX, a multidomain protein connecting environmental signals to twitching motility in Pseudomonas aeruginosa. J Bacteriol (2003) 2.07
Artificial ligand binding within the HIF2alpha PAS-B domain of the HIF2 transcription factor. Proc Natl Acad Sci U S A (2009) 2.02
Cloning and characterization of a cAMP-specific cyclic nucleotide phosphodiesterase. Proc Natl Acad Sci U S A (1998) 2.00
Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea. J Bacteriol (2003) 1.97
PAS domain residues involved in signal transduction by the Aer redox sensor of Escherichia coli. Mol Microbiol (2000) 1.95
Role of bkdR, a transcriptional activator of the sigL-dependent isoleucine and valine degradation pathway in Bacillus subtilis. J Bacteriol (1999) 1.94
A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1. Proc Natl Acad Sci U S A (1998) 1.93
A comprehensive analysis of hydrogen peroxide-induced gene expression in tobacco. Proc Natl Acad Sci U S A (2003) 1.92
Domain organization and flavin adenine dinucleotide-binding determinants in the aerotaxis signal transducer Aer of Escherichia coli. Proc Natl Acad Sci U S A (2000) 1.89
Genetic and functional analysis of the styrene catabolic cluster of Pseudomonas sp. strain Y2. J Bacteriol (1998) 1.83
Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. Appl Environ Microbiol (2007) 1.82
BdlA, a chemotaxis regulator essential for biofilm dispersion in Pseudomonas aeruginosa. J Bacteriol (2006) 1.82
Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins. BMC Genomics (2003) 1.76
Multistep phosphorelay proteins transmit oxidative stress signals to the fission yeast stress-activated protein kinase. Mol Biol Cell (2000) 1.66
Identification and characterization of a two-component sensor-kinase and response-regulator system (DcuS-DcuR) controlling gene expression in response to C4-dicarboxylates in Escherichia coli. J Bacteriol (1999) 1.64
An optomechanical transducer in the blue light receptor phototropin from Avena sativa. Proc Natl Acad Sci U S A (2001) 1.63
First evidence for phototropin-related blue-light receptors in prokaryotes. Biophys J (2002) 1.59
Genetic analysis and functional characterization of the Streptococcus pneumoniae vic operon. Infect Immun (2002) 1.59
The HWE histidine kinases, a new family of bacterial two-component sensor kinases with potentially diverse roles in environmental signaling. J Bacteriol (2004) 1.53
Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet (2009) 1.48
Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes. PLoS Comput Biol (2016) 1.46
Structural and functional analyses of photosynthetic regulatory genes regA and regB from Rhodovulum sulfidophilum, Roseobacter denitrificans, and Rhodobacter capsulatus. J Bacteriol (1999) 1.38
PAS-mediated dimerization of soluble guanylyl cyclase revealed by signal transduction histidine kinase domain crystal structure. J Biol Chem (2007) 1.37
PAS kinase: an evolutionarily conserved PAS domain-regulated serine/threonine kinase. Proc Natl Acad Sci U S A (2001) 1.36
Mechanistic insights revealed by the crystal structure of a histidine kinase with signal transducer and sensor domains. PLoS Biol (2013) 1.35
Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1. Appl Environ Microbiol (2009) 1.34
Envoy, a PAS/LOV domain protein of Hypocrea jecorina (Anamorph Trichoderma reesei), modulates cellulase gene transcription in response to light. Eukaryot Cell (2005) 1.31
The NifL-NifA System: a multidomain transcriptional regulatory complex that integrates environmental signals. J Bacteriol (2004) 1.31
Cyclic-di-GMP regulates extracellular polysaccharide production, biofilm formation, and rugose colony development by Vibrio vulnificus. Appl Environ Microbiol (2008) 1.27
A two-component signal transduction system with a PAS domain-containing sensor is required for virulence of Mycobacterium tuberculosis in mice. Biochem Biophys Res Commun (2004) 1.27
Globin-coupled sensors: a class of heme-containing sensors in Archaea and Bacteria. Proc Natl Acad Sci U S A (2001) 1.26
DNA microarray analysis of Methanosarcina mazei Gö1 reveals adaptation to different methanogenic substrates. Mol Genet Genomics (2005) 1.26
The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments. Appl Environ Microbiol (2009) 1.26
A two-component regulator of universal stress protein expression and adaptation to oxygen starvation in Mycobacterium smegmatis. J Bacteriol (2003) 1.24
Differentiation between electron transport sensing and proton motive force sensing by the Aer and Tsr receptors for aerotaxis. Mol Microbiol (2006) 1.24
The Streptococcus mutans vicX gene product modulates gtfB/C expression, biofilm formation, genetic competence, and oxidative stress tolerance. J Bacteriol (2006) 1.22
Signal transduction to the Azotobacter vinelandii NIFL-NIFA regulatory system is influenced directly by interaction with 2-oxoglutarate and the PII regulatory protein. EMBO J (2000) 1.20
An NADPH-dependent genetic switch regulates plant infection by the rice blast fungus. Proc Natl Acad Sci U S A (2010) 1.19
nblS, a gene involved in controlling photosynthesis-related gene expression during high light and nutrient stress in Synechococcus elongatus PCC 7942. J Bacteriol (2002) 1.18
Complete genome sequence of Nitrobacter hamburgensis X14 and comparative genomic analysis of species within the genus Nitrobacter. Appl Environ Microbiol (2008) 1.18
Expression of tropodithietic acid biosynthesis is controlled by a novel autoinducer. J Bacteriol (2010) 1.18
Role of intracellular domains in the function of the herg potassium channel. Eur Biophys J (2009) 1.15
PAS domain of the Aer redox sensor requires C-terminal residues for native-fold formation and flavin adenine dinucleotide binding. J Bacteriol (2004) 1.15
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. Environ Microbiol (2009) 1.14
MorA defines a new class of regulators affecting flagellar development and biofilm formation in diverse Pseudomonas species. J Bacteriol (2004) 1.13
Multiple roles of ligand in transforming the dioxin receptor to an active basic helix-loop-helix/PAS transcription factor complex with the nuclear protein Arnt. Mol Cell Biol (1999) 1.13
More than one way to sense chemicals. J Bacteriol (2001) 1.12
Recording of blue light-induced energy and volume changes within the wild-type and mutated phot-LOV1 domain from Chlamydomonas reinhardtii. Biophys J (2004) 1.12
MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins. Plant Physiol (2006) 1.11
Light signal transduction: an infinite spectrum of possibilities. Plant J (2010) 1.10
The plant pathogen Ralstonia solanacearum needs aerotaxis for normal biofilm formation and interactions with its tomato host. J Bacteriol (2007) 1.09
Chemoreceptor VfcA mediates amino acid chemotaxis in Vibrio fischeri. Appl Environ Microbiol (2013) 1.07
CdpA is a Burkholderia pseudomallei cyclic di-GMP phosphodiesterase involved in autoaggregation, flagellum synthesis, motility, biofilm formation, cell invasion, and cytotoxicity. Infect Immun (2010) 1.04
Genetic analysis of nif regulatory genes by utilizing the yeast two-hybrid system detected formation of a NifL-NifA complex that is implicated in regulated expression of nif genes. J Bacteriol (1999) 1.03
Isolation and properties of the complex between the enhancer binding protein NIFA and the sensor NIFL. J Bacteriol (1999) 1.03
Redox signal transduction by the ArcB sensor kinase of Haemophilus influenzae lacking the PAS domain. J Bacteriol (2001) 1.03
Topology and boundaries of the aerotaxis receptor Aer in the membrane of Escherichia coli. J Bacteriol (2006) 1.03
The ArcB sensor kinase of Escherichia coli autophosphorylates by an intramolecular reaction. J Bacteriol (2010) 1.02
Deletion mutant library for investigation of functional outputs of cyclic diguanylate metabolism in Pseudomonas aeruginosa PA14. Appl Environ Microbiol (2014) 1.01
Regional modulation of a stochastically expressed factor determines photoreceptor subtypes in the Drosophila retina. Dev Cell (2013) 1.00
Oxidative stress-related transcription factors in the regulation of secondary metabolism. Toxins (Basel) (2013) 1.00
Regulation of membrane permeability by a two-component regulatory system in Pseudomonas aeruginosa. Antimicrob Agents Chemother (2003) 1.00
Electron donation to the flavoprotein NifL, a redox-sensing transcriptional regulator. Biochem J (1998) 0.99
Polar localization of a soluble methyl-accepting protein of Pseudomonas aeruginosa. J Bacteriol (2005) 0.98
Ubiquinone and menaquinone electron carriers represent the yin and yang in the redox regulation of the ArcB sensor kinase. J Bacteriol (2013) 0.98
The pH-responsive regulon of HP0244 (FlgS), the cytoplasmic histidine kinase of Helicobacter pylori. J Bacteriol (2008) 0.98
Physiological analysis of the expression of the styrene degradation gene cluster in Pseudomonas fluorescens ST. Appl Environ Microbiol (2000) 0.98
Targeted disruption of the mouse PAS domain serine/threonine kinase PASKIN. Mol Cell Biol (2003) 0.97
Regulation of photosynthesis genes in Rubrivivax gelatinosus: transcription factor PpsR is involved in both negative and positive control. J Bacteriol (2004) 0.96
Mutational analysis of the signal-sensing domain of ResE histidine kinase from Bacillus subtilis. J Bacteriol (2004) 0.93
Isolation and functional analysis of a gene, tcsB, encoding a transmembrane hybrid-type histidine kinase from Aspergillus nidulans. Appl Environ Microbiol (2002) 0.93
Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1. DNA Res (2010) 0.93
Function of the N-terminal cap of the PAS domain in signaling by the aerotaxis receptor Aer. J Bacteriol (2006) 0.92
A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains. BMC Genomics (2012) 0.92
Blue light perception in bacteria. Photosynth Res (2004) 0.92
Plasmid-encoded MCP is involved in virulence, motility, and biofilm formation of Cronobacter sakazakii ATCC 29544. Infect Immun (2014) 0.91
Cyclic-di-GMP-binding CRP-like protein: a spectacular new role for a veteran signal transduction actor. J Bacteriol (2009) 0.90
PAS domain residues and prosthetic group involved in BdlA-dependent dispersion response by Pseudomonas aeruginosa biofilms. J Bacteriol (2012) 0.90
Inactivation of cyclic Di-GMP binding protein TDE0214 affects the motility, biofilm formation, and virulence of Treponema denticola. J Bacteriol (2013) 0.89
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Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales. PLoS One (2011) 0.88
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