Efficient in vitro translational termination in Escherichia coli is constrained by the orientations of the release factor, stop signal and peptidyl-tRNA within the termination complex.

PubWeight™: 0.87‹?›

🔗 View Article (PMID 9705149)

Published in Biol Chem on July 01, 1998

Authors

K K McCaughan1, E S Poole, H J Pel, J B Mansell, S A Mannering, W P Tate

Author Affiliations

1: Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand.

Articles by these authors

Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2. Proc Natl Acad Sci U S A (1985) 3.94

Translational termination efficiency in mammals is influenced by the base following the stop codon. Proc Natl Acad Sci U S A (1995) 2.49

The identity of the base following the stop codon determines the efficiency of in vivo translational termination in Escherichia coli. EMBO J (1995) 2.36

Sequence analysis suggests that tetra-nucleotides signal the termination of protein synthesis in eukaryotes. Nucleic Acids Res (1990) 2.20

The signal for the termination of protein synthesis in procaryotes. Nucleic Acids Res (1990) 2.05

The translational termination signal database. Nucleic Acids Res (1993) 1.90

Metabotropic glutamate receptors trigger homosynaptic protein synthesis to prolong long-term potentiation. J Neurosci (2000) 1.89

Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli. Gene (2001) 1.65

Three, four or more: the translational stop signal at length. Mol Microbiol (1996) 1.61

Release factor-dependent false stops are infrequent in Escherichia coli. J Mol Biol (1993) 1.57

TransTerm, the translational signal database, extended to include full coding sequences and untranslated regions. Nucleic Acids Res (1999) 1.52

Metaplasticity: a new vista across the field of synaptic plasticity. Prog Neurobiol (1997) 1.51

Hidden infidelities of the translational stop signal. Prog Nucleic Acid Res Mol Biol (1996) 1.45

Frameshift autoregulation in the gene for Escherichia coli release factor 2: partly functional mutants result in frameshift enhancement. Nucleic Acids Res (1990) 1.41

The role of immediate early genes in the stabilization of long-term potentiation. Mol Neurobiol (1991) 1.41

Maintenance of long-term potentiation in rat dentate gyrus requires protein synthesis but not messenger RNA synthesis immediately post-tetanization. Neuroscience (1989) 1.37

Mammalian release factor; in vitro assay and purification. Methods Enzymol (1974) 1.32

The concentration of polypeptide chain release factors 1 and 2 at different growth rates of Escherichia coli. J Mol Biol (1994) 1.30

Correlations between immediate early gene induction and the persistence of long-term potentiation. Neuroscience (1993) 1.26

Translational termination efficiency in both bacteria and mammals is regulated by the base following the stop codon. Biochem Cell Biol (1996) 1.26

Competition between frameshifting, termination and suppression at the frameshift site in the Escherichia coli release factor-2 mRNA. Nucleic Acids Res (1993) 1.26

Translational termination in Escherichia coli: three bases following the stop codon crosslink to release factor 2 and affect the decoding efficiency of UGA-containing signals. Nucleic Acids Res (1998) 1.25

The translational stop signal: codon with a context, or extended factor recognition element? Biochimie (1996) 1.23

Heterosynaptic metaplasticity in the hippocampus in vivo: a BCM-like modifiable threshold for LTP. Proc Natl Acad Sci U S A (2001) 1.22

Prokaryotic ribosomes recode the HIV-1 gag-pol-1 frameshift sequence by an E/P site post-translocation simultaneous slippage mechanism. Nucleic Acids Res (1995) 1.21

The translational termination signal database (TransTerm) now also includes initiation contexts. Nucleic Acids Res (1994) 1.21

Two regions of the Escherichia coli 16S ribosomal RNA are important for decoding stop signals in polypeptide chain termination. Nucleic Acids Res (1993) 1.20

Direct recognition of mRNA stop signals by Escherichia coli polypeptide chain release factor two. J Biol Chem (1994) 1.20

A single proteolytic cleavage in release factor 2 stabilizes ribosome binding and abolishes peptidyl-tRNA hydrolysis activity. J Biol Chem (1994) 1.17

The requirement for ribosomal proteins L7 and L12 in peptide-chain termination. Proc Natl Acad Sci U S A (1974) 1.16

The Escherichia coli ribosomal protein L11 suppresses release factor 2 but promotes the release factor 1 activities in peptide chain termination. J Biol Chem (1983) 1.15

The nucleotide sequence of the first two genes of the CFA/I fimbrial operon of human enterotoxigenic Escherichia coli. Microb Pathog (1989) 1.14

Selenocysteine incorporation directed from the 3'UTR: characterization of eukaryotic EFsec and mechanistic implications. Biofactors (2001) 1.14

Interferon induces tryptophanyl-tRNA synthetase expression in human fibroblasts. J Biol Chem (1991) 1.14

Escherichia coli release factor 3: resolving the paradox of a typical G protein structure and atypical function with guanine nucleotides. RNA (1998) 1.10

Peptidyltransferase inhibition by trichodermin. J Biol Chem (1973) 1.06

The translational signal database, TransTerm: more organisms, complete genomes. Nucleic Acids Res (1997) 1.06

Ribosomal proteins cross-linked to peptide chain termination release factor 2. J Biol Chem (1982) 1.04

Decoding the translational termination signal: the polypeptide chain release factor in Escherichia coli crosslinks to the base following the stop codon. RNA (1997) 1.04

UGA: a dual signal for 'stop' and for recoding in protein synthesis. Biochemistry (Mosc) (1999) 1.04

Isolation of a rat mitochondrial release factor. Accommodation of the changed genetic code for termination. J Biol Chem (1987) 1.04

Transterm: a database of messenger RNA components and signals. Nucleic Acids Res (2000) 1.02

The ribosomal binding and peptidyl-tRNA hydrolysis functions of Escherichia coli release factor 2 are linked through residue 246. RNA (2000) 1.02

Correlation between the induction of an immediate early gene, zif/268, and long-term potentiation in the dentate gyrus. Brain Res (1992) 1.01

Interaction of the release factors with the Escherichia coli ribosome: structurally and functionally-important domains. Biochimie (1992) 1.01

The leader peptides of attenuation-regulated chloramphenicol resistance genes inhibit translational termination. J Bacteriol (1994) 1.00

Biphasic changes in the levels of N-methyl-D-aspartate receptor-2 subunits correlate with the induction and persistence of long-term potentiation. Brain Res Mol Brain Res (1998) 1.00

Structural analysis of a group II intron by chemical modifications and minimal energy calculations. J Biomol Struct Dyn (1990) 1.00

A dynamic competition between release factor 2 and the tRNA(Sec) decoding UGA at the recoding site of Escherichia coli formate dehydrogenase H. EMBO J (2001) 0.98

Recognition of termination codon by release factor in the presence of a tRNA-occupied A site. Evidence for flexibility in accommodation of the release factor on the ribosome. J Biol Chem (1983) 0.97

Influence of guanine nucleotides and elongation factors on interaction of release factors with the ribosome. Proc Natl Acad Sci U S A (1973) 0.97

Tightly controlled expression systems for the production and purification of Escherichia coli release factor 1. Biochem Int (1990) 0.96

Rapid identification of an A1555G mutation in human mitochondrial DNA implicated in aminoglycoside-induced ototoxicity. J Hum Genet (1999) 0.95

Indirect regulation of translational termination efficiency at highly expressed genes and recoding sites by the factor recycling function of Escherichia coli release factor RF3. EMBO J (1999) 0.95

Are the tryptophanyl-tRNA synthetase and the peptide-chain-release factor from higher eukaryotes one and the same protein? Eur J Biochem (1993) 0.94

The ribosomal binding domain for the bacterial release factors RF-1, RF-2 and RF-3. FEBS Lett (1984) 0.94

Mammalian polypeptide chain release factor and tryptophanyl-tRNA synthetase are distinct proteins. EMBO J (1993) 0.94

Structure-function relationships in a self-splicing group II intron: a large part of domain II of the mitochondrial intron aI5 is not essential for self-splicing. Nucleic Acids Res (1989) 0.93

Functional characterization of yeast mitochondrial release factor 1. J Biol Chem (2000) 0.93

Frameshifting in the synthesis of Escherichia coli polypeptide chain release factor two on eukaryotic ribosomes. Eur J Biochem (1989) 0.92

The importance of the Escherichia coli ribosomal protein L16 for the reconstitution of the peptidyl-tRNA hydrolysis activity of peptide chain termination. J Biol Chem (1983) 0.92

Selection of aminoacyl-tRNAs at sense codons: the size of the tRNA variable loop determines whether the immediate 3' nucleotide to the codon has a context effect. Nucleic Acids Res (1995) 0.92

The translational signal database, TransTerm, is now a relational database. Nucleic Acids Res (1998) 0.91

Is the in-frame termination signal of the Escherichia coli release factor-2 frameshift site weakened by a particularly poor context? Nucleic Acids Res (1996) 0.91

Inhibition of peptide chain termination by antibodies specific for ribosomal proteins. J Mol Biol (1975) 0.91

Evolutionary history of introns in a multidomain globin gene. J Mol Evol (1996) 0.90

The NH2-terminal domain of Escherichia coli ribosomal protein L11. Its three-dimensional location and its role in the binding of release factors 1 and 2. J Biol Chem (1984) 0.88

The pyrimidine oligodeoxyribonucleotides from the DNA molecules of bacteriophages f1, fd, and M13. Virology (1974) 0.88

A catalogue of the pyrimidine oligodeoxyribonucleotides found in bacteriophage f1 DNA. Virology (1974) 0.87

Long-term regulation of N-methyl-D-aspartate receptor subunits and associated synaptic proteins following hippocampal synaptic plasticity. Neuroscience (2003) 0.87

Synaptic activity-dependent modulation of mitochondrial gene expression in the rat hippocampus. Brain Res Mol Brain Res (1998) 0.87

A novel strategy to interfere with human immunodeficiency virus type 1 propagation. N Z Med J (1998) 0.87

The mechanism of peptide chain termination. Mol Cell Biochem (1974) 0.87

Modification of histidine residues on proteins from the 50S subunit of the Escherichia coli ribosome. Effects on subunit assembly and peptidyl transferase centre activity. Eur J Biochem (1991) 0.86

Differential expression of immediate early genes after hippocampal long-term potentiation in awake rats. Brain Res Mol Brain Res (1993) 0.86

Localization of the release factor-2 binding site on 70 S ribosomes by immuno-electron microscopy. J Mol Biol (1990) 0.85

Functional domains in the Escherichia coli release factors. Activities of hybrids between RF-1 and RF-2. Eur J Biochem (1993) 0.84

The stop signal controls the efficiency of release factor-mediated translational termination. Genet Eng (N Y) (1996) 0.84

Evolution of a polymeric globin in the brine shrimp Artemia. Nature (1990) 0.84

TransTerm: a database of translational signals. Nucleic Acids Res (1996) 0.83

Sequential increase in Egr-1 and AP-1 DNA binding activity in the dentate gyrus following the induction of long-term potentiation. Brain Res Mol Brain Res (2000) 0.83

A polypeptide chain release factor from the undeveloped cyst of the brine shrimp, Artemia salina. FEBS Lett (1979) 0.82

The peptidyltransferase centre of the Escherichia coli ribosome. The histidine of protein L16 affects the reconstitution and control of the active centre but is not essential for release-factor-mediated peptidyl-tRNA hydrolysis and peptide bond formation. Eur J Biochem (1987) 0.82

Interdomain linkage in the polymeric hemoglobin molecule of Artemia. J Mol Evol (1994) 0.82

Structure of the filamentous bacteriophages: orientation of the DNA molecule within the phage particle. Virology (1974) 0.81

The polymeric hemoglobin molecule of Artemia. Interpretation of translated cDNA sequence of nine domains. J Biol Chem (1991) 0.81

Transferrin-gene expression in the rat mammary gland. Independence of maternal iron status. Biochem J (1990) 0.80