Hydrogen bonding geometry of a protein-bound carbohydrate from water exchange-mediated cross-relaxation.

PubWeight™: 0.76‹?›

🔗 View Article (PMID 9751995)

Published in J Biomol NMR on August 01, 1998

Authors

E W Sayers1, J L Weaver, J H Prestegard

Author Affiliations

1: Department of Pharmacology, Yale University, New Haven, CT 06510, USA.

Articles cited by this

1H, 13C and 15N chemical shift referencing in biomolecular NMR. J Biomol NMR (1995) 15.76

Endothelial-leukocyte adhesion molecules. Annu Rev Immunol (1993) 4.96

Selectins: interpreters of cell-specific carbohydrate information during inflammation. Science (1992) 4.75

Protein hydration in aqueous solution. Science (1991) 3.73

Structure of a C-type mannose-binding protein complexed with an oligosaccharide. Nature (1992) 3.19

Proton exchange rates from amino acid side chains--implications for image contrast. Magn Reson Med (1996) 2.53

Structure of the calcium-dependent lectin domain from a rat mannose-binding protein determined by MAD phasing. Science (1991) 2.44

Characterization studies on a new lectin found in seeds of Vicia ervilia. FEBS Lett (1975) 2.36

Trimeric structure of a C-type mannose-binding protein. Structure (1994) 1.91

Measurement of amide proton exchange rates and NOEs with water in 13C/15N-enriched calcineurin B. J Biomol NMR (1993) 1.60

Collectins--soluble proteins containing collagenous regions and lectin domains--and their roles in innate immunity. Protein Sci (1994) 1.45

Human mannose-binding protein carbohydrate recognition domain trimerizes through a triple alpha-helical coiled-coil. Nat Struct Biol (1994) 1.39

Concepts and principles of glycobiology. FASEB J (1993) 1.17

Binding of sugar ligands to Ca(2+)-dependent animal lectins. I. Analysis of mannose binding by site-directed mutagenesis and NMR. J Biol Chem (1994) 1.17

Separation of intramolecular NOE and exchange peaks in water exchange spectroscopy using spin-echo filters. J Biomol NMR (1996) 1.09

The two-dimensional transferred nuclear Overhauser effect: theory and practice. Annu Rev Biophys Biomol Struct (1993) 1.02

NMR spectroscopy of hydroxyl protons in supercooled carbohydrates. Nat Struct Biol (1994) 1.01

Ligand-binding characteristics of rat serum-type mannose-binding protein (MBP-A). Homology of binding site architecture with mammalian and chicken hepatic lectins. J Biol Chem (1991) 0.99

Physical characterization and crystallization of the carbohydrate-recognition domain of a mannose-binding protein from rat. J Biol Chem (1991) 0.97

Demonstration of carbohydrate-recognition activity in diverse proteins which share a common primary structure motif. Biochem Soc Trans (1989) 0.95

Complete relaxation and conformational exchange matrix (CORCEMA) analysis of NOESY spectra of interacting systems; two-dimensional transferred NOESY. J Magn Reson B (1995) 0.91

Trimeric C-type lectin domains in host defence. Structure (1994) 0.88

Amide exchange rates in Escherichia coli acyl carrier protein: correlation with protein structure and dynamics. Protein Sci (1995) 0.88

The synthesis of pulse sequences yielding arbitrary magnetization vectors. Magn Reson Med (1989) 0.86

Motional properties of a pentasaccharide containing a 2,6-branched mannose residue as studied by 13C nuclear spin relaxation. J Biomol NMR (1996) 0.86

Crystallization and preliminary X-ray analysis of a trimeric form of human mannose binding protein. J Mol Biol (1994) 0.75

Synthesis and characterization of a 13C-labeled alpha-mannosyl glycolipid analog from [13C]glucose. Chem Phys Lipids (1993) 0.75

Articles by these authors

A transmembrane helix dimer: structure and implications. Science (1997) 6.46

Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution. Proc Natl Acad Sci U S A (1995) 4.20

Order matrix analysis of residual dipolar couplings using singular value decomposition. J Magn Reson (1999) 3.49

NMR evidence for slow collective motions in cyanometmyoglobin. Nat Struct Biol (1997) 2.77

Structural and dynamic analysis of residual dipolar coupling data for proteins. J Am Chem Soc (2001) 2.01

Magnetically orientable phospholipid bilayers containing small amounts of a bile salt analogue, CHAPSO. Biophys J (1990) 1.95

Domain orientation and dynamics in multidomain proteins from residual dipolar couplings. Biochemistry (1999) 1.77

Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings. J Magn Reson (2000) 1.64

Improved dilute bicelle solutions for high-resolution NMR of biological macromolecules. J Biomol NMR (1998) 1.62

1H and 15N magnetic resonance assignments, secondary structure, and tertiary fold of Escherichia coli DnaJ(1-78). Biochemistry (1995) 1.36

Nuclear magnetic resonance characterization of the myristoylated, N-terminal fragment of ADP-ribosylation factor 1 in a magnetically oriented membrane array. Biochemistry (1998) 1.34

Magnetic field induced ordering of bile salt/phospholipid micelles: new media for NMR structural investigations. Biochim Biophys Acta (1988) 1.33

High-resolution proton NMR studies of gangliosides. 1. Use of homonuclear two-dimensional spin-echo J-correlated spectroscopy for determination of residue composition and anomeric configurations. Biochemistry (1983) 1.30

Orientational behavior of phosphatidylcholine bilayers in the presence of aromatic amphiphiles and a magnetic field. Biophys J (1993) 1.27

Refinement of the NMR structures for acyl carrier protein with scalar coupling data. Proteins (1990) 1.27

Application of neural networks to automated assignment of NMR spectra of proteins. J Biomol NMR (1994) 1.24

A dipolar coupling based strategy for simultaneous resonance assignment and structure determination of protein backbones. J Am Chem Soc (2001) 1.23

NMR studies of pH-induced transport of carboxylic acids across phospholipid vesicle membranes. Biochem Biophys Res Commun (1977) 1.21

Leucine side-chain rotamers in a glycophorin A transmembrane peptide as revealed by three-bond carbon-carbon couplings and 13C chemical shifts. J Biomol NMR (1996) 1.21

Epitope mapping by photobleaching fluorescence resonance energy transfer measurements using a laser scanning microscope system. Biophys J (1992) 1.21

A dynamic model for the structure of acyl carrier protein in solution. Biochemistry (1989) 1.17

Rapid determination of protein folds using residual dipolar couplings. J Mol Biol (2000) 1.14

Three-dimensional structure of acyl carrier protein determined by NMR pseudoenergy and distance geometry calculations. Biochemistry (1988) 1.14

NMR and computational studies of interactions between remote residues in gangliosides. Biochemistry (1990) 1.13

Performance of a neural-network-based determination of amino acid class and secondary structure from 1H-15N NMR data. J Biomol NMR (1997) 1.12

Cholesterol-phosphatidylcholine interactions in vesicle systems. Implication of vesicle size and proton magnetic resonance line-width changes. Biochemistry (1974) 1.07

Molecular symmetry as an aid to geometry determination in ligand protein complexes. J Magn Reson (2000) 1.05

The influence of C-terminal extension on the structure of the "J-domain" in E. coli DnaJ. Protein Sci (1999) 1.04

Distance mapping of protein-binding sites using spin-labeled oligosaccharide ligands. Protein Sci (2001) 1.04

Backbone dynamics of the N-terminal domain in E. coli DnaJ determined by 15N- and 13CO-relaxation measurements. Biochemistry (1999) 1.03

Conformational analysis of a flexible oligosaccharide using residual dipolar couplings. J Am Chem Soc (2001) 1.02

Fusion of dimyristoyllecithin vesicles as studied by proton magnetic resonance spectroscopy. Biochemistry (1974) 1.02

Conformational differences in liganded and unliganded states of Galectin-3. Biochemistry (2003) 1.01

Interaction of the polyene antibiotics with lipid bilayer vesicles containing cholesterol. Biochim Biophys Acta (1976) 1.01

Fusion of fatty acid containing lecithin vesicles. Biochemistry (1975) 1.00

Carbon-13 Fourier transform nuclear magnetic resonance. 8. Role of steric and electric field effects in fatty acid spectra. J Org Chem (1974) 0.99

Sign determination of dipolar couplings in field-oriented bicelles by variable angle sample spinning (VASS). J Biomol NMR (1999) 0.95

Fusion of phosphatidic acid-phosphatidylcholine mixed lipid vesicles. Biochim Biophys Acta (1979) 0.95

Location of divalent ion sites in acyl carrier protein using relaxation perturbed 2D NMR. FEBS Lett (1988) 0.95

Solution conformations of a trimannoside from nuclear magnetic resonance and molecular dynamics simulations. Biophys J (2000) 0.95

A quantitative J-correlation experiment for the accurate measurement of one-bond amide 15N-1H couplings in proteins. J Magn Reson B (1996) 0.94

A Metropolis Monte Carlo implementation of bayesian time-domain parameter estimation: application to coupling constant estimation from antiphase multiplets. J Magn Reson (1998) 0.94

Structural basis for thermostability in aporubredoxins from Pyrococcus furiosus and Clostridium pasteurianum. Biochemistry (2001) 0.94

Nuclear magnetic resonance studies of the N-terminal fragment of adenosine diphosphate ribosylation factor 1 in micelles and bicelles: influence of N-myristoylation. Biochemistry (2000) 0.94

Three-dimensional structure of acyl carrier protein in solution determined by nuclear magnetic resonance and the combined use of dynamical simulated annealing and distance geometry. Eur J Biochem (1988) 0.94

Flow cytometric enumeration of micronucleated reticulocytes: high transferability among 14 laboratories. Environ Mol Mutagen (2001) 0.94

Nuclear magnetic resonance study of acetic acid permeation of large unilamellar vesicle membranes. Biophys J (1979) 0.94

Exchange facilitated indirect detection of hyperpolarized 15ND2-amido-glutamine. J Magn Reson (2011) 0.92

Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target. J Struct Funct Genomics (2004) 0.92

Subunit structure of glucose oxidase from Aspergillus niger. Biochemistry (1972) 0.92

Hydration of phosphatidylocholine. Adsorption isotherm and proton nuclear magnetic resonance studies. Biophys J (1977) 0.92

Acyl carrier protein from Escherichia coli. Structural characterization of short-chain acylated acyl carrier proteins by NMR. Biochemistry (1985) 0.91

Structure and dynamics of the sialic acid moiety of GM3-ganglioside at the surface of a magnetically oriented membrane. Biochemistry (1993) 0.91

Quantitation of rapid proton-deuteron amide exchange using hadamard spectroscopy. J Biomol NMR (2004) 0.90

Secondary structure of substance P bound to liposomes in organic solvents and in solution from Raman and CD spectroscopy. J Biol Chem (1990) 0.90

Proton magnetic resonance studies of the cation-binding properties of nonactin. II. Comparison of the sodium ion, potassium ion, and cesium ion complexes. J Am Chem Soc (1970) 0.89

Residual dipolar coupling derived orientational constraints on ligand geometry in a 53 kDa protein-ligand complex. J Mol Biol (1999) 0.89

Measurement of amide 15N-1H one-bond couplings in proteins using accordion heteronuclear-shift-correlation experiments. J Magn Reson B (1996) 0.89

Structural homology of spinach acyl carrier protein and Escherichia coli acyl carrier protein based on NMR data. Proteins (1997) 0.89

Modulation of complement fixation and the phlogistic capacity of group A, B, and D streptococci by human lysozyme acting on their cell walls. Infect Immun (1986) 0.89

Determination and application of vision standards in industry. Am J Ind Med (1996) 0.88

Computer modelling of glycolipids at membrane surfaces. Biophys J (1992) 0.88

Amide exchange rates in Escherichia coli acyl carrier protein: correlation with protein structure and dynamics. Protein Sci (1995) 0.88

Small angle x-ray scattering studies of magnetically oriented lipid bilayers. Biophys J (1995) 0.88

Structure and dynamics of sialic acid at the surface of a magnetically oriented membrane system. Biochemistry (1993) 0.88

Fusion of phosphatidylcholine bilayer vesicles: role of free fatty acid. Biochemistry (1978) 0.87

Protein dynamics and distance determination by NOE measurements. FEBS Lett (1988) 0.87

NMR-pseudoenergy approach to the solution structure of acyl carrier protein. Biochemistry (1987) 0.87

Torsion angle analysis of glycolipid order at membrane surfaces. Biophys J (1993) 0.86

Tissue distribution and histopathological effects of titanium dioxide nanoparticles after intravenous or subcutaneous injection in mice. J Appl Toxicol (2011) 0.86

Nuclear magnetic resonance determinations of permeation coefficients for maleic acid in phospholipid vesicles. Biophys J (1979) 0.86

19F nuclear magnetic resonance studies of lipid bilayer systems. I. J Am Chem Soc (1976) 0.86

CD4 changes conformation upon ligand binding. J Immunol (1992) 0.85

Structure of divalent cation-phosphatidic acid complexes as determined by 31P-NMR. Biochim Biophys Acta (1984) 0.85

Motional effects on NMR structural data. Comparison of spinach and Escherichia coli acyl carrier proteins. Biochem Pharmacol (1990) 0.85

High-resolution proton NMR studies of gangliosides. 2. Use of two-dimensional nuclear Overhauser effect spectroscopy and sialylation shifts for determination of oligosaccharide sequence and linkage sites. Biochemistry (1983) 0.84

Nuclear magnetic resonance structural and ligand binding studies of BLBC, a two-domain fragment of barley lectin. Biochemistry (1998) 0.84

Carbon-13 nuclear magnetic resonance as a probe of side chain orientation and mobility in carboxymethylated human carbonic anhydrase B. Biochemistry (1978) 0.84

Evaluation of the rodent micronucleus assay by a 28-day treatment protocol: Summary of the 13th Collaborative Study by the Collaborative Study Group for the Micronucleus Test (CSGMT)/Environmental Mutagen Society of Japan (JEMS)-Mammalian Mutagenicity Study Group (MMS). Environ Mol Mutagen (2001) 0.84

Structure determination of a new protein from backbone-centered NMR data and NMR-assisted structure prediction. Proteins (2006) 0.84

Tautomerism of nucleic acid bases. I. Cytosine. J Am Chem Soc (1972) 0.83

Rupture and transformation of lipid bilayer membranes at thermal phase transitions. Cryobiology (1978) 0.83

Oligosaccharide structure by two-dimensional proton nuclear magnetic resonance spectroscopy. Methods Enzymol (1987) 0.83

Information about health care providers among urban low-income minorities. Inquiry (1975) 0.83

Basic hydrodynamics of Richtmyer-Meshkov-type growth and oscillations in the inertial confinement fusion-relevant conditions. Philos Trans A Math Phys Eng Sci (2010) 0.82

Direct measurement of 1H-1H dipolar couplings in proteins: a complement to traditional NOE measurements. J Biomol NMR (2000) 0.82

Electric field effects in the 13C nuclear magnetic resonance spectra of unsaturated fatty acids. A potential tool for conformational analysis. J Am Chem Soc (1973) 0.82

Structural properties of a Ca2+-phosphatidic acid complex: small angle X-ray scattering and calorimetric results. Biochim Biophys Acta (1981) 0.82

Structural monitoring of oligosaccharides through 13C enrichment and NMR observation of acetyl groups. Biophys J (2006) 0.82

Measurement of cross correlation between dipolar coupling and chemical shift anisotropy in the spin relaxation of 13C, 15N-labeled proteins. J Magn Reson (1998) 0.81

Quantitation of chemical exchange rates using pulsed-field-gradient diffusion measurements. J Biomol NMR (1997) 0.81

[19F]-1H heteronuclear nuclear Overhauser effect studies of the acyl chain-binding site of acyl carrier protein. J Biol Chem (1987) 0.81

Overexpression, purification, and characterization of Escherichia coli acyl carrier protein and two mutant proteins. Protein Expr Purif (1995) 0.81

Acyl carrier protein from Escherichia coli I. Aspects of the solution structure as evidenced by proton nuclear Overhauser experiments at 500 MHz. Biochemistry (1983) 0.81

Domain-domain motions in proteins from time-modulated pseudocontact shifts. J Biomol NMR (2007) 0.80

Fusion kinetics of phosphatidylcholine-phosphatidic acid mixed lipids vesicles: a proton nuclear magnetic resonance study. Biochim Biophys Acta (1980) 0.80

Dynamics of an interfacial methylene in dimyristoylphosphatidylcholine vesicles using carbon-13 spin relaxation. Biochemistry (1983) 0.80

13C NMR studies of wheat germ agglutinin interactions with N-acetylglucosamine at a magnetically oriented bilayer surface. Biochemistry (1994) 0.80

Aurin tricarboxylic acid, the anti-AIDS compound, prevents the binding of interferon-alpha to its receptor. Biochem Biophys Res Commun (1990) 0.80