Published in Proc Natl Acad Sci U S A on October 12, 1999
Speeding molecular recognition by using the folding funnel: the fly-casting mechanism. Proc Natl Acad Sci U S A (2000) 5.71
DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies. PLoS Comput Biol (2007) 2.37
Visualization of Myc/Max/Mad family dimers and the competition for dimerization in living cells. Mol Cell Biol (2004) 1.47
Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel) (2015) 1.39
A reexamination of information theory-based methods for DNA-binding site identification. BMC Bioinformatics (2009) 1.12
A theoretical framework for gene induction and experimental comparisons. Proc Natl Acad Sci U S A (2010) 1.10
Networks of bZIP protein-protein interactions diversified over a billion years of evolution. Science (2013) 1.08
Mechanism of transcriptional activation by Pseudomonas aeruginosa ExsA. J Bacteriol (2009) 1.05
Disordered to ordered folding in the regulation of diphtheria toxin repressor activity. Proc Natl Acad Sci U S A (2001) 1.04
The importance of being flexible: the case of basic region leucine zipper transcriptional regulators. Curr Protein Pept Sci (2009) 1.01
Describing sequence-ensemble relationships for intrinsically disordered proteins. Biochem J (2013) 1.00
ApoFnr binds as a monomer to promoters regulating the expression of enterotoxin genes of Bacillus cereus. J Bacteriol (2008) 0.96
Redox-mediated mechanisms regulate DNA binding activity of the G-group of basic region leucine zipper (bZIP) transcription factors in Arabidopsis. J Biol Chem (2012) 0.92
Genetic noise control via protein oligomerization. BMC Syst Biol (2008) 0.92
Kinetic analysis of the interaction of b/HLH/Z transcription factors Myc, Max, and Mad with cognate DNA. Biochemistry (2010) 0.90
Thermodynamics of protein-protein interactions of cMyc, Max, and Mad: effect of polyions on protein dimerization. Biochemistry (2006) 0.89
Structure-based design of a dimeric RNA-peptide complex. EMBO J (2001) 0.87
Modular and versatile hybrid coordination motifs on alpha-helical protein surfaces. Inorg Chem (2010) 0.85
The role of helix stabilizing residues in GCN4 basic region folding and DNA binding. Protein Sci (2002) 0.84
Arc-repressor dimerization on DNA: folding rate enhancement by colocalization. Biophys J (2009) 0.84
Insights on glucocorticoid receptor activity modulation through the binding of rigid steroids. PLoS One (2010) 0.83
The GCN4 bZIP targets noncognate gene regulatory sequences: quantitative investigation of binding at full and half sites. Biochemistry (2007) 0.82
DNA tightens the dimeric DNA-binding domain of human papillomavirus E2 protein without changes in volume. Proc Natl Acad Sci U S A (2000) 0.81
Cryptocephal, the Drosophila melanogaster ATF4, is a specific coactivator for ecdysone receptor isoform B2. PLoS Genet (2012) 0.81
Crystal structure of the minimalist Max-E47 protein chimera. PLoS One (2012) 0.81
Physical limits on cooperative protein-DNA binding and the kinetics of combinatorial transcription regulation. Biophys J (2011) 0.80
Kinetically-defined component actions in gene repression. PLoS Comput Biol (2015) 0.79
Conformational Dynamics of the Partially Disordered Yeast Transcription Factor GCN4. J Chem Theory Comput (2013) 0.77
Monomeric and dimeric models of ERK2 in conjunction with studies on cellular localization, nuclear translocation, and in vitro analysis. Mol Cells (2012) 0.77
DNA-mediated assembly of weakly interacting DNA-binding protein subunits: in vitro recruitment of phage 434 repressor and yeast GCN4 DNA-binding domains. Nucleic Acids Res (2004) 0.77
Dynamics of GCN4 facilitate DNA interaction: a model-free analysis of an intrinsically disordered region. Phys Chem Chem Phys (2016) 0.76
Electrostatic control of half-site spacing preferences by the cyclic AMP response element-binding protein CREB. Nucleic Acids Res (2001) 0.76
DNA binding reduces the dissociation rate of STAT1 dimers and impairs the interdimeric exchange of protomers. BMC Biochem (2014) 0.75
Biophysical characterization of the b-HLH-LZ of ΔMax, an alternatively spliced isoform of Max found in tumor cells: Towards the validation of a tumor suppressor role for the Max homodimers. PLoS One (2017) 0.75
The bZIP dimer localizes at DNA full-sites where each basic region can alternately translocate and bind to subsites at the half-site. Biochemistry (2012) 0.75
Tunable Helicity, Stability and DNA-Binding Properties of Short Peptides with Hybrid Metal Coordination Motifs. Chem Sci (2016) 0.75
Max: a helix-loop-helix zipper protein that forms a sequence-specific DNA-binding complex with Myc. Science (1991) 12.00
Transcriptional activation: a complex puzzle with few easy pieces. Cell (1994) 8.63
Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature (1993) 7.41
Facilitated target location in biological systems. J Biol Chem (1989) 7.18
Cyclic AMP-responsive DNA-binding protein: structure based on a cloned placental cDNA. Science (1988) 5.29
A structural taxonomy of DNA-binding domains. Nature (1991) 5.20
Rapid, electrostatically assisted association of proteins. Nat Struct Biol (1996) 4.72
Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM--a flexible, portable system. Anal Biochem (1983) 4.09
Faster superoxide dismutase mutants designed by enhancing electrostatic guidance. Nature (1992) 3.56
Structural determinants of nuclear receptor assembly on DNA direct repeats. Nature (1995) 3.32
A family of immunologically related transcription factors that includes multiple forms of ATF and AP-1. Genes Dev (1988) 3.13
HTLV-I Tax protein stimulation of DNA binding of bZIP proteins by enhancing dimerization. Science (1993) 3.05
Electrostatic recognition between superoxide and copper, zinc superoxide dismutase. Nature (1984) 2.36
Kinetic discrimination in T-cell activation. Proc Natl Acad Sci U S A (1996) 2.17
Dimerization of a specific DNA-binding protein on the DNA. Science (1992) 1.88
Probing the folding mechanism of a leucine zipper peptide by stopped-flow circular dichroism spectroscopy. Biochemistry (1995) 1.78
Computer-based analysis of the binding steps in protein complex formation. Proc Natl Acad Sci U S A (1997) 1.67
Mechanism of DNA-binding enhancement by the human T-cell leukaemia virus transactivator Tax. Nature (1995) 1.61
A highly conserved domain of TFIID displays species specificity in vivo. Cell (1991) 1.50
Recognition of bZIP proteins by the human T-cell leukaemia virus transactivator Tax. Nature (1995) 1.44
Multiple oligomeric states regulate the DNA binding of helix-loop-helix peptides. Proc Natl Acad Sci U S A (1993) 1.33
DNA-induced conformational changes are the basis for cooperative dimerization by the DNA binding domain of the retinoid X receptor. J Mol Biol (1998) 1.22
DNA-binding mechanism of the monomeric orphan nuclear receptor NGFI-B. Nat Struct Biol (1999) 1.20
Amino acid residues that flank core peptide epitopes and the extracellular domains of CD4 modulate differential signaling through the T cell receptor. J Exp Med (1994) 1.19
Acceleration of the refolding of Arc repressor by nucleic acids and other polyanions. Nat Struct Biol (1999) 1.15
Structure-based design of a dimeric zinc finger protein. Biochemistry (1998) 1.07
DNA-mediated folding and assembly of MyoD-E47 heterodimers. J Biol Chem (1998) 1.01
Certain bZIP peptides bind DNA sequentially as monomers and dimerize on the DNA. Nat Struct Biol (1997) 1.00
Diffusion-controlled DNA recognition by an unfolded, monomeric bZIP transcription factor. FEBS Lett (1998) 0.98
cAMP response element-binding protein monomers cooperatively assemble to form dimers on DNA. J Biol Chem (1998) 0.94
Mechanism of DNA binding enhancement by hepatitis B virus protein pX. Biochemistry (1997) 0.84
Dimerization and DNA binding facilitate alpha-helix formation of Max in solution. J Biochem (1997) 0.81
Mechanism of DNA-binding enhancement by the human T-cell leukaemia virus transactivator Tax. Nature (1995) 1.61
Virtually unidirectional binding of TBP to the AdMLP TATA box within the quaternary complex with TFIIA and TFIIB. Chem Biol (2000) 1.59
DNA targets for certain bZIP proteins distinguished by an intrinsic bend. Science (1994) 1.42
Kinetic studies of Fos.Jun.DNA complex formation: DNA binding prior to dimerization. Biochemistry (2001) 1.32
Fabrication of a configurable, single-use microfluidic device. Anal Chem (2001) 1.19
Bidirectional binding of the TATA box binding protein to the TATA box. Proc Natl Acad Sci U S A (1997) 1.18
Conformation-dependent cleavage of staphylococcal nuclease with a disulfide-linked iron chelate. Proc Natl Acad Sci U S A (1992) 1.17
Concerted evolution of structure and function in a miniature protein. J Am Chem Soc (2001) 1.10
Measuring the forces involved in polyvalent adhesion of uropathogenic Escherichia coli to mannose-presenting surfaces. Proc Natl Acad Sci U S A (2000) 1.08
Certain bZIP peptides bind DNA sequentially as monomers and dimerize on the DNA. Nat Struct Biol (1997) 1.00
Altered specificity of DNA-binding proteins with transition metal dimerization domains. Science (1993) 0.99
Distribution of labor among bZIP segments in the control of DNA affinity and specificity. Chem Biol (1994) 0.96
Mapping RNA regions in eukaryotic ribosomes that are accessible to methidiumpropyl-EDTA.Fe(II) and EDTA.Fe(II). Biochemistry (1994) 0.94
Methodology for optimizing functional miniature proteins based on avian pancreatic polypeptide using phage display. Bioorg Med Chem Lett (2001) 0.92
Electrostatic mechanism for DNA bending by bZIP proteins. Biochemistry (1997) 0.90
Mechanism of DNA binding enhancement by hepatitis B virus protein pX. Biochemistry (1997) 0.84
Design of a metallo-bZIP protein that discriminates between CRE and AP1 target sites: selection against AP1. Proc Natl Acad Sci U S A (1993) 0.83
Polarity of transcription on Pol II and archaeal promoters: where is the "one-way sign" and how is it read? Cold Spring Harb Symp Quant Biol (1998) 0.82
Effects of nucleic acids and polyanions on dimer formation and DNA binding by bZIP and bHLHZip transcription factors. Bioorg Med Chem (2001) 0.81
Hepatitis B virus protein pX enhances the monomer assembly pathway of bZIP.DNA complexes. Biochemistry (2001) 0.81
Conformation of Tax-response elements in the human T-cell leukemia virus type I promoter. Chem Biol (1995) 0.81
Physiological and biomechanical differences between wheelchair-dependent and able-bodied subjects during wheelchair ergometry. Eur J Appl Physiol Occup Physiol (1990) 0.81
Gene regulation: protein escorts to the transcription ball. Curr Biol (2000) 0.81
The role of a basic amino acid cluster in target site selection and non-specific binding of bZIP peptides to DNA. Nucleic Acids Res (1997) 0.80
Kinetic preference for oriented DNA binding by the yeast TATA-binding protein TBP. Biochemistry (2001) 0.79
Sequence determinants of the intrinsic bend in the cyclic AMP response element. Biochemistry (1998) 0.78
Hepatitis B virus X protein activates transcription by bypassing CREB phosphorylation, not by stabilizing bZIP-DNA complexes. Biochemistry (2001) 0.76
Electrostatic control of half-site spacing preferences by the cyclic AMP response element-binding protein CREB. Nucleic Acids Res (2001) 0.76
Nonspecific DNA bending and the specificity of protein-DNA interactions. Science (1995) 0.76
Inhibition of Rev·RRE complexation by triplex tethered oligonucleotide probes. Bioorg Med Chem (1997) 0.76
Preinitation complex assembly: potentially a bumpy path. Curr Opin Chem Biol (1998) 0.75