Published in Nucleic Acids Res on January 01, 2000
DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol (2003) 84.79
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol (2007) 60.97
GenBank. Nucleic Acids Res (2000) 36.75
The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics (2002) 29.41
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res (2005) 24.85
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res (2003) 18.64
IntAct: an open source molecular interaction database. Nucleic Acids Res (2004) 15.02
Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res (2007) 13.44
BIND--The Biomolecular Interaction Network Database. Nucleic Acids Res (2001) 11.74
E-MSD: the European Bioinformatics Institute Macromolecular Structure Database. Nucleic Acids Res (2003) 7.79
The European Large Subunit Ribosomal RNA Database. Nucleic Acids Res (2001) 7.61
MMDB: 3D structure data in Entrez. Nucleic Acids Res (2000) 6.93
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. BMC Bioinformatics (2005) 6.58
A new measure for functional similarity of gene products based on Gene Ontology. BMC Bioinformatics (2006) 4.82
The PDB data uniformity project. Nucleic Acids Res (2001) 3.65
ORENZA: a web resource for studying ORphan ENZyme activities. BMC Bioinformatics (2006) 3.26
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinformatics (2006) 3.15
Assembly properties of the human immunodeficiency virus type 1 CA protein. J Virol (2004) 3.09
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies. PLoS One (2009) 3.03
The University of Minnesota Biocatalysis/Biodegradation Database: emphasizing enzymes. Nucleic Acids Res (2001) 2.85
MultiSeq: unifying sequence and structure data for evolutionary analysis. BMC Bioinformatics (2006) 2.81
MyHits: improvements to an interactive resource for analyzing protein sequences. Nucleic Acids Res (2007) 2.77
An upper-level ontology for the biomedical domain. Comp Funct Genomics (2003) 2.73
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput Biol (2009) 2.61
MBGD: microbial genome database for comparative analysis. Nucleic Acids Res (2003) 2.60
NEWT, a new taxonomy portal. Nucleic Acids Res (2003) 2.49
BioWarehouse: a bioinformatics database warehouse toolkit. BMC Bioinformatics (2006) 2.40
Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? Protein Sci (2004) 2.38
DBTBS: a database of Bacillus subtilis promoters and transcription factors. Nucleic Acids Res (2001) 2.35
Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution. Proc Natl Acad Sci U S A (2003) 2.33
Metagenomic characterization of Chesapeake Bay virioplankton. Appl Environ Microbiol (2007) 2.22
High-throughput knockout screen in Schizosaccharomyces pombe identifies a novel gene required for efficient homolog disjunction during meiosis I. Cell Cycle (2010) 2.18
Information theory applied to the sparse gene ontology annotation network to predict novel gene function. Bioinformatics (2007) 2.15
Phylogenetic position of the Pentastomida and (pan)crustacean relationships. Proc Biol Sci (2004) 2.06
Diversity of tRNA genes in eukaryotes. Nucleic Acids Res (2006) 2.05
PSORTdb: a protein subcellular localization database for bacteria. Nucleic Acids Res (2005) 2.05
The tmRDB and SRPDB resources. Nucleic Acids Res (2006) 2.01
Sodium ion cycle in bacterial pathogens: evidence from cross-genome comparisons. Microbiol Mol Biol Rev (2001) 1.95
The MGED ontology: a framework for describing functional genomics experiments. Comp Funct Genomics (2003) 1.92
ProtoNet: hierarchical classification of the protein space. Nucleic Acids Res (2003) 1.88
AsMamDB: an alternative splice database of mammals. Nucleic Acids Res (2001) 1.85
On the origin of mitochondria: a genomics perspective. Philos Trans R Soc Lond B Biol Sci (2003) 1.79
High genetic variability of the agr locus in Staphylococcus species. J Bacteriol (2002) 1.78
PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing. Pac Symp Biocomput (2006) 1.76
A survey of visualization tools for biological network analysis. BioData Min (2008) 1.76
The complement of protein phosphatase catalytic subunits encoded in the genome of Arabidopsis. Plant Physiol (2002) 1.76
Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones. Nucleic Acids Res (2001) 1.70
Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin. Appl Environ Microbiol (2002) 1.67
Molecular evolution of FtsZ protein sequences encoded within the genomes of archaea, bacteria, and eukaryota. J Mol Evol (2004) 1.65
GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update. Nucleic Acids Res (2003) 1.60
GlycomeDB - integration of open-access carbohydrate structure databases. BMC Bioinformatics (2008) 1.59
High-throughput computational and experimental techniques in structural genomics. Genome Res (2004) 1.55
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology. BMC Bioinformatics (2008) 1.54
Identification of eukaryotic open reading frames in metagenomic cDNA libraries made from environmental samples. Appl Environ Microbiol (2006) 1.49
Mutations affecting the development of the peripheral nervous system in Drosophila: a molecular screen for novel proteins. Genetics (2000) 1.49
A computational screen for type I polyketide synthases in metagenomics shotgun data. PLoS One (2008) 1.44
Evolution of the genetic triplet code via two types of doublet codons. J Mol Evol (2005) 1.44
Links from genome proteins to known 3-D structures. Genome Res (2000) 1.43
Meta-Analysis of Large-Scale Toxicogenomic Data Finds Neuronal Regeneration Related Protein and Cathepsin D to Be Novel Biomarkers of Drug-Induced Toxicity. PLoS One (2015) 1.41
Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes. Genome Biol Evol (2010) 1.40
A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal. PLoS Biol (2005) 1.37
Minimotif miner 2nd release: a database and web system for motif search. Nucleic Acids Res (2008) 1.36
Semantic classification of biomedical concepts using distributional similarity. J Am Med Inform Assoc (2007) 1.35
Dynamics of Recognition between tRNA and elongation factor Tu. J Mol Biol (2008) 1.32
The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise. J Mol Evol (2004) 1.29
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment. BMC Bioinformatics (2007) 1.26
An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations. PLoS Comput Biol (2009) 1.26
Virtual Ribosome--a comprehensive DNA translation tool with support for integration of sequence feature annotation. Nucleic Acids Res (2006) 1.26
RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression. Nucleic Acids Res (2001) 1.24
Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution. BMC Bioinformatics (2008) 1.22
13C isotopologue perturbation studies of Listeria monocytogenes carbon metabolism and its modulation by the virulence regulator PrfA. Proc Natl Acad Sci U S A (2006) 1.21
Genome-wide characterization of pancreatic adenocarcinoma patients using next generation sequencing. PLoS One (2012) 1.21
Comparative analysis and "expression space" coverage of the production of prokaryotic membrane proteins for structural genomics. Protein Sci (2006) 1.21
PhyloPat: phylogenetic pattern analysis of eukaryotic genes. BMC Bioinformatics (2006) 1.19
Functional characterization of pathogenic human MSH2 missense mutations in Saccharomyces cerevisiae. Genetics (2007) 1.17
DNA sequence-based "bar codes" for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources. Plant Physiol (2003) 1.16
Phylogenetic comparative assembly. Algorithms Mol Biol (2010) 1.16
An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities. Immunome Res (2005) 1.15
EGAN: exploratory gene association networks. Bioinformatics (2009) 1.14
Architecture of an antagonistic tree/fungus network: the asymmetric influence of past evolutionary history. PLoS One (2008) 1.13
Combining target enrichment with barcode multiplexing for high throughput SNP discovery. BMC Genomics (2010) 1.12
Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans. BMC Struct Biol (2008) 1.11
Towards ontology-driven navigation of the lipid bibliosphere. BMC Bioinformatics (2008) 1.10
The evolutionary history of protein domains viewed by species phylogeny. PLoS One (2009) 1.09
Identification of Down's syndrome critical locus gene SIM2-s as a drug therapy target for solid tumors. Proc Natl Acad Sci U S A (2003) 1.09
A recombinant beta-1,3-glucanosyltransferase homolog of Coccidioides posadasii protects mice against coccidioidomycosis. Infect Immun (2003) 1.08
MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa. BMC Bioinformatics (2006) 1.05
Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina. BMC Genomics (2007) 1.05
Target selection and determination of function in structural genomics. IUBMB Life (2003) 1.05
Annotation and cross-indexing of array elements on multiple platforms. Environ Health Perspect (2004) 1.04
Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets. BMC Bioinformatics (2007) 1.03
DBMLoc: a Database of proteins with multiple subcellular localizations. BMC Bioinformatics (2008) 1.02
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. BMC Bioinformatics (2009) 1.01
HitKeeper, a generic software package for hit list management. Source Code Biol Med (2007) 1.01
Long-term trends in evolution of indels in protein sequences. BMC Evol Biol (2007) 1.01
PhyloExplorer: a web server to validate, explore and query phylogenetic trees. BMC Evol Biol (2009) 1.01
BLASTO: a tool for searching orthologous groups. Nucleic Acids Res (2007) 1.00
Transterm: a database of mRNAs and translational control elements. Nucleic Acids Res (2002) 1.00
iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences. Nucleic Acids Res (2009) 1.00
A proposed syntax for Minimotif Semantics, version 1. BMC Genomics (2009) 0.99
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Basic local alignment search tool. J Mol Biol (1990) 659.07
The Protein Data Bank. Nucleic Acids Res (2000) 187.10
The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res (2000) 49.22
GenBank. Nucleic Acids Res (2000) 36.75
Entrez: molecular biology database and retrieval system. Methods Enzymol (1996) 30.67
Pieces of the puzzle: expressed sequence tags and the catalog of human genes. J Mol Med (Berl) (1997) 26.92
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett (1999) 25.40
Protein sequence similarity searches using patterns as seeds. Nucleic Acids Res (1998) 23.87
Complete genomes in WWW Entrez: data representation and analysis. Bioinformatics (1999) 19.31
A gene map of the human genome. Science (1996) 14.32
A breakpoint map of recurrent chromosomal rearrangements in human neoplasia. Nat Genet (1997) 12.94
A physical map of 30,000 human genes. Science (1998) 12.43
NCBI's LocusLink and RefSeq. Nucleic Acids Res (2000) 8.63
Data management and analysis for gene expression arrays. Nat Genet (1998) 8.60
MMDB: 3D structure data in Entrez. Nucleic Acids Res (2000) 6.93
dbSNP: a database of single nucleotide polymorphisms. Nucleic Acids Res (2000) 6.84
Making effective use of human genomic sequence data. Trends Genet (1999) 6.12
The PIR-International Protein Sequence Database. Nucleic Acids Res (1999) 5.18
MIPS: a database for genomes and protein sequences. Nucleic Acids Res (1999) 4.96
Human/mouse homology relationships. Genomics (1996) 4.69
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res (2001) 43.17
GenBank. Nucleic Acids Res (2000) 36.75
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett (1999) 25.40
Protein sequence similarity searches using patterns as seeds. Nucleic Acids Res (1998) 23.87
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res (2001) 22.33
GenBank. Nucleic Acids Res (1999) 21.47
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2001) 19.13
Cn3D: sequence and structure views for Entrez. Trends Biochem Sci (2000) 16.98
A physical map of 30,000 human genes. Science (1998) 12.43
SAGEmap: a public gene expression resource. Genome Res (2000) 10.41
A public database for gene expression in human cancers. Cancer Res (1999) 8.81
Data management and analysis for gene expression arrays. Nat Genet (1998) 8.60
Use of MEDLINE by physicians for clinical problem solving. JAMA (1993) 6.51
Analysis of human transcriptomes. Nat Genet (1999) 6.14
Making effective use of human genomic sequence data. Trends Genet (1999) 6.12
ESTablishing a human transcript map. Nat Genet (1995) 5.89
A systematic, high-resolution linkage of the cytogenetic and physical maps of the human genome. Nat Genet (2000) 4.78
PowerBLAST: a new network BLAST application for interactive or automated sequence analysis and annotation. Genome Res (1997) 4.10
Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins. Nucleic Acids Res (1998) 2.82
Natural variation of drug susceptibility in wild-type human immunodeficiency virus type 1. Antimicrob Agents Chemother (2004) 2.44
Genome sequence comparison and scenarios for gene rearrangements: a test case. Genomics (1995) 2.32
MMDB: Entrez's 3D structure database. Nucleic Acids Res (1999) 2.17
Simian immunodeficiency viruses from central and western Africa: evidence for a new species-specific lentivirus in tantalus monkeys. J Virol (1993) 1.98
A fast and scalable radiation hybrid map construction and integration strategy. Genome Res (2000) 1.91
The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi. Nucleic Acids Res (1994) 1.89
Genetic analysis of human immunodeficiency virus type 1 envelope V3 region isolates from mothers and infants after perinatal transmission. J Virol (1995) 1.77
Identical genetic changes in different histologic components of Wilms' tumors. J Natl Cancer Inst (1997) 1.44
Structure and variations of feline immunodeficiency virus envelope glycoproteins. Virology (1993) 1.41
Human parasite finds taxonomic home. Nature (1996) 1.36
Simian T-cell lymphotropic virus type 1 from Mandrillus sphinx as a simian counterpart of human T-cell lymphotropic virus type 1 subtype D. J Virol (1998) 1.29
Radiation hybrid map of the mouse genome. Nat Genet (1999) 1.21
Evaluating the impact of MEDLINE using the Critical Incident Technique. Proc Annu Symp Comput Appl Med Care (1991) 1.12
B epitopes and selection pressures in feline immunodeficiency virus envelope glycoproteins. J Virol (1993) 1.12
Guide to the draft human genome. Nature (2001) 1.07
Molecular profiling of clinical tissue specimens: feasibility and applications. Am J Pathol (2000) 1.00
Molecular profiling of clinical tissues specimens: feasibility and applications. J Mol Diagn (2000) 0.98
Analysis of transition from long-term nonprogressive to progressive infection identifies sequences that may attenuate HIV type 1. AIDS Res Hum Retroviruses (2001) 0.94
Universal tree of life. Nature (1993) 0.94
High variability of the gag/pol transframe region among HIV-1 isolates. C R Acad Sci III (1994) 0.94
Germ line c-myc is not down-regulated by loss or exclusion of activating factors in myc-induced macrophage tumors. Mol Cell Biol (1989) 0.93
Maintenance of an intact human immunodeficiency virus type 1 vpr gene following mother-to-infant transmission. J Virol (1998) 0.92
Continued withdrawal from the cell cycle and regulation of cellular genes in mouse erythroleukemia cells blocked in differentiation by the c-myc oncogene. Mol Cell Biol (1989) 0.91
Selective pressure exerted by immunodominant HIV-1-specific cytotoxic T lymphocyte responses during primary infection drives genetic variation restricted to the cognate epitope. Eur J Immunol (1999) 0.90
Diversity of the V3 region of HIV in Paris, France. AIDS (1993) 0.89
Molecular characterization and phylogenetic analyses of a new simian T cell lymphotropic virus type 1 in a wild-caught african baboon (Papio anubis) with an indeterminate STLV type 2-like serology. AIDS Res Hum Retroviruses (2000) 0.87
Polymorphisms in p1-p6/p6* of HIV type 1 can delay protease autoprocessing and increase drug susceptibility. AIDS Res Hum Retroviruses (2003) 0.87
Characterization of mother-infant HIV type 1 gag p17 sequences associated with perinatal transmission. AIDS Res Hum Retroviruses (1999) 0.86
Automated information retrieval in science and technology. Science (1980) 0.86
Conservation of an intact vif gene of human immunodeficiency virus type 1 during maternal-fetal transmission. J Virol (1998) 0.86
Arglabin-DMA, a plant derived sesquiterpene, inhibits farnesyltransferase. Oncol Rep (2001) 0.83
First case of mother-to-infant HIV type 1 group O transmission and evolution of C2V3 sequences in the infected child. French HIV Pediatric Cohort Study Group. AIDS Res Hum Retroviruses (1998) 0.83
Insights into the evolution of nuclear dualism in the ciliates revealed by phylogenetic analysis of rRNA sequences. J Eukaryot Microbiol (1996) 0.81
[Blepharoplasties. Different techniques of surgery]. Ann Otolaryngol Chir Cervicofac (1990) 0.80
Sequence similarity searching using the BLAST family of programs. Curr Protoc Mol Biol (2001) 0.80
Different technical approaches for blepharoplasty in eyelid rejuvenation surgery. Arch Otorhinolaryngol (1989) 0.78
Phylogenetic relationships of the Nassulida within the phylum Ciliophora inferred from the complete small subunit rRNA gene sequences of Furgasonia blochmanni, Obertrumia georgiana, and Pseudomicrothorax dubius. J Eukaryot Microbiol (1995) 0.77
Development of a simplified, sensitive high-performance liquid chromatographic method using fluorescence detection to determine the concentration of UCN-01 in human plasma. J Chromatogr B Biomed Sci Appl (2001) 0.77
Pharmaceutical properties of related calanolide compounds with activity against human immunodeficiency virus. J Pharm Sci (1998) 0.76
Development of a high-performance liquid chromatographic method to determine the concentration of karenitecin, a novel highly lipophilic camptothecin derivative, in human plasma and urine. J Chromatogr B Biomed Sci Appl (2001) 0.76
Sequence similarity searching using the BLAST family of programs. Curr Protoc Protein Sci (2001) 0.76
Coordination of human genome sequencing via a consensus framework map. Trends Genet (1998) 0.76
Detection of loss of heterozygosity on chromosome 9q22.3 in microdissected sporadic basal cell carcinoma. Hum Pathol (1999) 0.76
Transport mechanisms of small molecules through polyamide 12/montmorillonite nanocomposites. J Phys Chem B (2010) 0.75
A phase II and pharmacokinetic study of enloplatin in patients with platinum refractory advanced ovarian carcinoma. Anticancer Drugs (1997) 0.75
A part-randomized study of intravenous oseltamivir in adolescents and adults. Eur J Clin Microbiol Infect Dis (2015) 0.75
Phylogenetic analysis. Methods Biochem Anal (1998) 0.75
Studies of secondary transforming events in murine c-myc retrovirus-induced monocyte tumors. Curr Top Microbiol Immunol (1989) 0.75
'Size leap' algorithm: an efficient extraction of the longest common motifs from a molecular sequence set. Application to the DNA sequence reconstruction. Comput Appl Biosci (1991) 0.75
["Delta" cartilaginous graft in secondary or post traumatic rhinoplasty]. Ann Otolaryngol Chir Cervicofac (1990) 0.75
Phylogenetic analysis. Methods Biochem Anal (2001) 0.75
[Blepharoplasty: various technics in surgery of eyelid aging]. Ann Chir Plast Esthet (1990) 0.75