Published in Appl Environ Microbiol on October 01, 2000
Microbial source tracking: current methodology and future directions. Appl Environ Microbiol (2002) 2.69
Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl Environ Microbiol (2006) 2.58
Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent. Environ Microbiol (2009) 2.20
Identification of fecal Escherichia coli from humans and animals by ribotyping. Appl Environ Microbiol (2001) 2.12
Host distributions of uncultivated fecal Bacteroidales bacteria reveal genetic markers for fecal source identification. Appl Environ Microbiol (2005) 2.06
Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes. Appl Environ Microbiol (2004) 1.82
Enterococci in the environment. Microbiol Mol Biol Rev (2012) 1.44
Comparison of ribotyping and repetitive extragenic palindromic-PCR for identification of fecal Escherichia coli from humans and animals. Appl Environ Microbiol (2003) 1.39
Quantitative microbial faecal source tracking with sampling guided by hydrological catchment dynamics. Environ Microbiol (2008) 1.39
Performance, design, and analysis in microbial source tracking studies. Appl Environ Microbiol (2007) 1.37
Traditional and molecular analyses for fecal indicator bacteria in non-point source subtropical recreational marine waters. Water Res (2010) 1.34
Quantitative PCR method for sensitive detection of ruminant fecal pollution in freshwater and evaluation of this method in alpine karstic regions. Appl Environ Microbiol (2006) 1.31
Phylogenetic diversity and molecular detection of bacteria in gull feces. Appl Environ Microbiol (2008) 1.28
Detection of human-derived fecal pollution in environmental waters by use of a PCR-based human polyomavirus assay. Appl Environ Microbiol (2006) 1.28
A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards. BMC Bioinformatics (2008) 1.26
Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples. Appl Environ Microbiol (2006) 1.25
Quantification of human polyomaviruses JC Virus and BK Virus by TaqMan quantitative PCR and comparison to other water quality indicators in water and fecal samples. Appl Environ Microbiol (2009) 1.24
Multitiered approach using quantitative PCR to track sources of fecal pollution affecting Santa Monica Bay, California. Appl Environ Microbiol (2006) 1.23
Use of antibiotic resistance analysis for representativeness testing of multiwatershed libraries. Appl Environ Microbiol (2003) 1.21
Comparison of bacteroides-prevotella 16S rRNA genetic markers for fecal samples from different animal species. Appl Environ Microbiol (2005) 1.20
Evaluation of two library-independent microbial source tracking methods to identify sources of fecal contamination in French estuaries. Appl Environ Microbiol (2007) 1.20
Basin-wide analysis of the dynamics of fecal contamination and fecal source identification in Tillamook Bay, Oregon. Appl Environ Microbiol (2006) 1.19
Sewage reflects the distribution of human faecal Lachnospiraceae. Environ Microbiol (2013) 1.17
A quantitative real-time PCR assay for the highly sensitive and specific detection of human faecal influence in spring water from a large alpine catchment area. Lett Appl Microbiol (2007) 1.17
Lachnospiraceae and Bacteroidales alternative fecal indicators reveal chronic human sewage contamination in an urban harbor. Appl Environ Microbiol (2011) 1.15
Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution. Appl Environ Microbiol (2007) 1.15
Relative decay of Bacteroidales microbial source tracking markers and cultivated Escherichia coli in freshwater microcosms. Appl Environ Microbiol (2010) 1.15
Pepper mild mottle virus as an indicator of fecal pollution. Appl Environ Microbiol (2009) 1.13
Real-time PCR detection of pathogenic microorganisms in roof-harvested rainwater in Southeast Queensland, Australia. Appl Environ Microbiol (2008) 1.13
Detection of genetic markers of fecal indicator bacteria in Lake Michigan and determination of their relationship to Escherichia coli densities using standard microbiological methods. Appl Environ Microbiol (2005) 1.07
Luminex detection of fecal indicators in river samples, marine recreational water, and beach sand. Mar Pollut Bull (2007) 1.07
Quantitative evaluation of enterococci and Bacteroidales released by adults and toddlers in marine water. Water Res (2009) 1.05
Specificity of a Bacteroides thetaiotaomicron marker for human feces. Appl Environ Microbiol (2005) 1.05
Multiplex PCR with 16S rRNA gene-targeted primers of bifidobacterium spp. to identify sources of fecal pollution. Appl Environ Microbiol (2004) 1.04
Development of a swine-specific fecal pollution marker based on host differences in methanogen mcrA genes. Appl Environ Microbiol (2007) 1.04
Molecular approaches to microbiological monitoring: fecal source detection. Environ Monit Assess (2003) 1.03
Relative abundance of Bacteroides spp. in stools and wastewaters as determined by hierarchical oligonucleotide primer extension. Appl Environ Microbiol (2008) 1.03
Bifidobacteria in feces and environmental waters. Appl Environ Microbiol (2007) 0.99
Bacteroidales diversity in ring-billed gulls (Laurus delawarensis) residing at Lake Michigan beaches. Appl Environ Microbiol (2009) 0.98
Microplate subtractive hybridization to enrich for bacteroidales genetic markers for fecal source identification. Appl Environ Microbiol (2005) 0.98
Persistence of Bacteroides species populations in a river as measured by molecular and culture techniques. Appl Environ Microbiol (2010) 0.97
Identification of bacterial DNA markers for the detection of human fecal pollution in water. Appl Environ Microbiol (2007) 0.97
Evaluation of conventional and alternative monitoring methods for a recreational marine beach with nonpoint source of fecal contamination. Environ Sci Technol (2010) 0.97
Discovering new indicators of fecal pollution. Trends Microbiol (2014) 0.96
Unsuitability of quantitative Bacteroidales 16S rRNA gene assays for discerning fecal contamination of drinking water. Appl Environ Microbiol (2010) 0.96
Impact of ileocecal resection and concomitant antibiotics on the microbiome of the murine jejunum and colon. PLoS One (2013) 0.96
Metabolomics analysis identifies intestinal microbiota-derived biomarkers of colonization resistance in clindamycin-treated mice. PLoS One (2014) 0.95
Enteric pathogens in stored drinking water and on caregiver's hands in Tanzanian households with and without reported cases of child diarrhea. PLoS One (2014) 0.94
Presence of Bacteroidales as a predictor of pathogens in surface waters of the central California coast. Appl Environ Microbiol (2010) 0.93
Microbial diversity and host-specific sequences of Canada goose feces. Appl Environ Microbiol (2009) 0.93
Performance assessment PCR-based assays targeting bacteroidales genetic markers of bovine fecal pollution. Appl Environ Microbiol (2010) 0.93
Highly discriminatory single-nucleotide polymorphism interrogation of Escherichia coli by use of allele-specific real-time PCR and eBURST analysis. Appl Environ Microbiol (2010) 0.93
Occurrence and persistence of bacterial pathogens and indicator organisms in beach sand along the California coast. Appl Environ Microbiol (2012) 0.92
Evaluation of swine-specific PCR assays used for fecal source tracking and analysis of molecular diversity of swine-specific "bacteroidales" populations. Appl Environ Microbiol (2009) 0.92
Development and evaluation of a quantitative PCR assay targeting sandhill crane (Grus canadensis) fecal pollution. Appl Environ Microbiol (2012) 0.92
Determining sources of fecal bacteria in waterways. Environ Monit Assess (2006) 0.92
Genetic markers for rapid PCR-based identification of gull, Canada goose, duck, and chicken fecal contamination in water. Appl Environ Microbiol (2011) 0.91
Development of goose- and duck-specific DNA markers to determine sources of Escherichia coli in waterways. Appl Environ Microbiol (2006) 0.91
Association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution. Appl Environ Microbiol (2012) 0.91
Host species-specific metabolic fingerprint database for enterococci and Escherichia coli and its application to identify sources of fecal contamination in surface waters. Appl Environ Microbiol (2005) 0.91
Blautia and Prevotella sequences distinguish human and animal fecal pollution in Brazil surface waters. Environ Microbiol Rep (2014) 0.90
Genome sequence of the Bacteroides fragilis phage ATCC 51477-B1. Virol J (2008) 0.90
Bifidobacterial diversity and the development of new microbial source tracking indicators. Appl Environ Microbiol (2011) 0.90
Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples. Appl Environ Microbiol (2014) 0.89
Persistence and growth of fecal Bacteroidales assessed by bromodeoxyuridine immunocapture. Appl Environ Microbiol (2006) 0.89
Hollow-fiber ultrafiltration and PCR detection of human-associated genetic markers from various types of surface water in Florida. Appl Environ Microbiol (2010) 0.88
Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups. Appl Environ Microbiol (2015) 0.88
Using DNA microarrays to identify library-independent markers for bacterial source tracking. Appl Environ Microbiol (2006) 0.88
Performance of two quantitative PCR methods for microbial source tracking of human sewage and implications for microbial risk assessment in recreational waters. Appl Environ Microbiol (2012) 0.87
Microbial communities in pre-columbian coprolites. PLoS One (2013) 0.87
Molecular indicators used in the development of predictive models for microbial source tracking. Appl Environ Microbiol (2010) 0.87
Temporal assessment of the impact of exposure to cow feces in two watersheds by multiple host-specific PCR assays. Appl Environ Microbiol (2008) 0.86
Fecal indicator bacteria (FIB) levels during dry weather from Southern California reference streams. Environ Monit Assess (2008) 0.84
Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene. PeerJ (2016) 0.84
Quantitative real-time PCR assays for sensitive detection of Canada goose-specific fecal pollution in water sources. Appl Environ Microbiol (2010) 0.84
Development and applications of microbial ecogenomic indicators for monitoring water quality: report of a workshop assessing the state of the science, research needs and future directions. Environ Monit Assess (2006) 0.84
U.S. Recreational Water Quality Criteria: A Vision for the Future. Int J Environ Res Public Health (2015) 0.84
Pig manure contamination marker selection based on the influence of biological treatment on the dominant fecal microbial groups. Appl Environ Microbiol (2009) 0.82
Prebiotic Oligosaccharides: Comparative Evaluation Using In Vitro Cultures of Infants' Fecal Microbiomes. Appl Environ Microbiol (2014) 0.82
Comparison of the host specificities of two bacteroidales quantitative PCR assays used for tracking human fecal contamination. Appl Environ Microbiol (2011) 0.81
Sewage contamination of a densely populated coral 'atoll' (Bermuda). Environ Monit Assess (2010) 0.81
Relevance of Bacteroidales and F-specific RNA bacteriophages for efficient fecal contamination tracking at the level of a catchment in France. Appl Environ Microbiol (2012) 0.81
Evaluation of bovine feces-associated microbial source tracking markers and their correlations with fecal indicators and zoonotic pathogens in a Brisbane, Australia, reservoir. Appl Environ Microbiol (2013) 0.81
Tracking the primary sources of fecal pollution in a tropical watershed in a one-year study. Appl Environ Microbiol (2013) 0.81
Toolbox Approaches Using Molecular Markers and 16S rRNA Gene Amplicon Data Sets for Identification of Fecal Pollution in Surface Water. Appl Environ Microbiol (2015) 0.81
Aerobic digestion reduces the quantity of antibiotic resistance genes in residual municipal wastewater solids. Front Microbiol (2013) 0.80
Distribution and abundance of human-specific Bacteroides and relation to traditional indicators in an urban tropical catchment. J Appl Microbiol (2014) 0.80
Microbial quality of tropical inland waters and effects of rainfall events. Appl Environ Microbiol (2012) 0.80
Decay of fecal indicator bacterial populations and bovine-associated source-tracking markers in freshly deposited cow pats. Appl Environ Microbiol (2013) 0.80
Molecular detection of Campylobacter spp. and fecal indicator bacteria during the northern migration of sandhill cranes (Grus canadensis) at the central Platte River. Appl Environ Microbiol (2013) 0.80
High-throughput and quantitative procedure for determining sources of Escherichia coli in waterways by using host-specific DNA marker genes. Appl Environ Microbiol (2006) 0.79
Methanobrevibacter ruminantium as an indicator of domesticated-ruminant fecal pollution in surface waters. Appl Environ Microbiol (2007) 0.79
Biotic interactions and sunlight affect persistence of fecal indicator bacteria and microbial source tracking genetic markers in the upper Mississippi river. Appl Environ Microbiol (2014) 0.79
Molecular diversity of Bacteroidales in fecal and environmental samples and swine-associated subpopulations. Appl Environ Microbiol (2012) 0.79
Sources and distribution of surface water fecal contamination and prevalence of schistosomiasis in a Brazilian village. PLoS Negl Trop Dis (2014) 0.78
Muddying the waters: a new area of concern for drinking water contamination in Cameroon. Int J Environ Res Public Health (2014) 0.78
LA35 Poultry Fecal Marker Persistence Is Correlated with That of Indicators and Pathogens in Environmental Waters. Appl Environ Microbiol (2015) 0.78
Age-related shifts in the density and distribution of genetic marker water quality indicators in cow and calf feces. Appl Environ Microbiol (2013) 0.78
Seasonal variations in the risk of gastrointestinal illness on a tropical recreational beach. J Water Health (2012) 0.77
Distribution of genetic markers of fecal pollution on a freshwater sandy shoreline in proximity to wastewater effluent. Environ Sci Technol (2013) 0.77
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