SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology.

PubWeight™: 1.87‹?› | Rank: Top 3%

🔗 View Article (PMID 11091307)

Published in Mol Ecol on November 01, 2000

Authors

P Sunnucks1, A C Wilson, L B Beheregaray, K Zenger, J French, A C Taylor

Author Affiliations

1: Department of Biological Sciences, Macquarie University, NSW 2109, Australia. p.sunnucks@latrobe.edu.au

Articles citing this

High MHC diversity maintained by balancing selection in an otherwise genetically monomorphic mammal. Proc Natl Acad Sci U S A (2004) 2.11

Host-based divergence in populations of the pea aphid: insights from nuclear markers and the prevalence of facultative symbionts. Proc Biol Sci (2003) 2.10

Transmission of a fatal clonal tumor by biting occurs due to depleted MHC diversity in a threatened carnivorous marsupial. Proc Natl Acad Sci U S A (2007) 2.03

Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L. BMC Genomics (2012) 1.68

Single-stranded heteroduplex intermediates in lambda Red homologous recombination. BMC Mol Biol (2010) 1.51

Genetic variability within Borrelia burgdorferi sensu lato genospecies established by PCR-single-strand conformation polymorphism analysis of the rrfA-rrlB intergenic spacer in ixodes ricinus ticks from the Czech Republic. Appl Environ Microbiol (2003) 1.40

Differential shuffling of native genetic diversity across introduced regions in a brown alga: aquaculture vs. maritime traffic effects. Proc Natl Acad Sci U S A (2005) 1.38

Giant tortoises are not so slow: rapid diversification and biogeographic consensus in the Galápagos. Proc Natl Acad Sci U S A (2004) 1.38

A rapid fish radiation associated with the last sea-level changes in southern Brazil: the silverside Odontesthes perugiae complex. Proc Biol Sci (2002) 1.18

Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation. BMC Evol Biol (2010) 1.13

DNA-based diet analysis for any predator. PLoS One (2009) 1.13

Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling. Appl Environ Microbiol (2004) 1.13

Phylogenetic identification of symbiotic dinoflagellates via length heteroplasmy in domain V of chloroplast large subunit (cp23S)-ribosomal DNA sequences. Mar Biotechnol (NY) (2003) 1.11

Novelties in hybrid zones: crossroads between population genomic and ecological approaches. PLoS One (2007) 1.10

The first comprehensive genetic linkage map of a marsupial: the tammar wallaby (Macropus eugenii). Genetics (2002) 1.07

Intraspecies genotype variability of the microsporidian parasite Encephalitozoon hellem. J Clin Microbiol (2003) 1.06

Life history and environmental variation interact to determine effective population to census size ratio. Proc Biol Sci (2006) 1.01

Effects of Medicago truncatula genetic diversity, rhizobial competition, and strain effectiveness on the diversity of a natural sinorhizobium species community. Appl Environ Microbiol (2008) 0.97

Diverse MHC IIB allele repertoire increases parasite resistance and body condition in the Long-tailed giant rat (Leopoldamys sabanus). BMC Evol Biol (2009) 0.88

Isolation and genetic diversity of endangered grey nurse shark (Carcharias taurus) populations. Biol Lett (2006) 0.88

Carbon utilization profiles of bacteria colonizing the headbox water of two paper machines in a Canadian mill. J Ind Microbiol Biotechnol (2009) 0.87

Development and application of three-tiered nuclear genetic markers for basal Hexapods using single-stranded conformation polymorphism coupled with targeted DNA sequencing. BMC Genet (2006) 0.86

Identification of a novel point mutation of mouse proto-oncogene c-kit through N-ethyl-N-nitrosourea mutagenesis. Genetics (2005) 0.82

Mitochondrial DNA indicates late pleistocene divergence of populations of Heteronympha merope, an emerging model in environmental change biology. PLoS One (2009) 0.82

Genetic monitoring and complex population dynamics: insights from a 12-year study of the Rio Grande silvery minnow. Evol Appl (2012) 0.82

Comparative genetic analysis of a wheat seed dormancy QTL with rice and Brachypodium identifies candidate genes for ABA perception and calcium signaling. Funct Integr Genomics (2011) 0.81

Inference of population history by coupling exploratory and model-driven phylogeographic analyses. Int J Mol Sci (2010) 0.81

Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: toward a high-throughput method for microbial diversity studies in soil. Microb Ecol (2007) 0.80

Analysis of the fungal flora in environmental dust samples by PCR-SSCP method. Curr Microbiol (2013) 0.79

Environmental complexity and biodiversity: the multi-layered evolutionary history of a log-dwelling velvet worm in Montane Temperate Australia. PLoS One (2013) 0.79

Maintenance of MHC Class IIB diversity in a recently established songbird population. (2012) 0.79

A comparison of variation between a MHC pseudogene and microsatellite loci of the little greenbul (Andropadus virens). BMC Evol Biol (2005) 0.79

Differing impact of a major biogeographic barrier on genetic structure in two large kangaroos from the monsoon tropics of Northern Australia. Ecol Evol (2014) 0.78

Rampant nuclear insertion of mtDNA across diverse lineages within Orthoptera (Insecta). PLoS One (2014) 0.78

Three divergent lineages within an Australian marsupial (Petrogale penicillata) suggest multiple major refugia for mesic taxa in southeast Australia. Ecol Evol (2014) 0.78

IL-7R α polymorphisms in 60 Iranian multiple sclerosis patients. Iran J Neurol (2012) 0.77

The use of carcasses for the analysis of cetacean population genetic structure: a comparative study in two dolphin species. PLoS One (2011) 0.77

Drift rather than selection dominates MHC class II allelic diversity patterns at the biogeographical range scale in natterjack toads Bufo calamita. PLoS One (2014) 0.76

Factor V Leiden mutation is not a predisposing factor for acute coronary syndromes. Indian Heart J (2012) 0.76

Is single-strand conformation polymorphism analysis of the full 5' untranslated region an adequate approach to study hepatitis C virus quasispecies distribution? J Virol (2009) 0.76

Genetic diversity and evolution of Chinese traditional medicinal fungus Polyporus umbellatus (Polyporales, Basidiomycota). PLoS One (2013) 0.75

Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii). PLoS One (2017) 0.75

Evidence of Subdivisions on Evolutionary Timescales in a Large, Declining Marsupial Distributed across a Phylogeographic Barrier. PLoS One (2016) 0.75

Balancing selection and recombination as evolutionary forces caused population genetic variations in golden pheasant MHC class I genes. BMC Evol Biol (2016) 0.75

Identification of cultured Brachionus rotifers based on RFLP and SSCP screening. Mar Biotechnol (NY) (2006) 0.75

New data on Weddell seal (Leptonychotes weddellii) colonies: A genetic analysis of a top predator from the Ross Sea, Antarctica. PLoS One (2017) 0.75

Articles by these authors

(truncated to the top 100)

Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci U S A (1979) 22.76

Mitochondrial DNA and human evolution. Nature (1987) 22.33

Evolution at two levels in humans and chimpanzees. Science (1975) 21.07

African populations and the evolution of human mitochondrial DNA. Science (1991) 18.08

Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci U S A (1989) 12.95

Biochemical evolution. Annu Rev Biochem (1977) 12.74

Mitochondrial DNA sequences of primates: tempo and mode of evolution. J Mol Evol (1982) 11.47

Length mutations in human mitochondrial DNA: direct sequencing of enzymatically amplified DNA. Nucleic Acids Res (1987) 10.38

Evolution in bacteria: evidence for a universal substitution rate in cellular genomes. J Mol Evol (1987) 9.84

Branching pattern in the evolutionary tree for human mitochondrial DNA. Proc Natl Acad Sci U S A (1991) 8.23

Mitochondrial DNA sequences in single hairs from a southern African population. Proc Natl Acad Sci U S A (1989) 6.92

A beta peptide immunization reduces behavioural impairment and plaques in a model of Alzheimer's disease. Nature (2001) 6.78

DNA damage promotes jumping between templates during enzymatic amplification. J Biol Chem (1990) 6.59

Evolution of the cytochrome b gene of mammals. J Mol Evol (1991) 5.71

Plasma fibrinogen level and the risk of major cardiovascular diseases and nonvascular mortality: an individual participant meta-analysis. JAMA (2005) 5.60

Geographic variation in human mitochondrial DNA from Papua New Guinea. Genetics (1990) 5.44

Paternal inheritance of mitochondrial DNA in mice. Nature (1991) 5.38

Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature (1990) 5.34

Invitation to attend a health check in a general practice setting: comparison of attenders and non-attenders. J R Coll Gen Pract (1988) 5.27

Length mutations in human mitochondrial DNA. Genetics (1983) 4.81

Polymerase chain reaction reveals cloning artefacts. Nature (1988) 4.76

Early-onset amyloid deposition and cognitive deficits in transgenic mice expressing a double mutant form of amyloid precursor protein 695. J Biol Chem (2001) 4.51

Rapid duplication and loss of genes coding for the alpha chains of hemoglobin. Proc Natl Acad Sci U S A (1980) 4.33

Practice parameter: temporal lobe and localized neocortical resections for epilepsy: report of the Quality Standards Subcommittee of the American Academy of Neurology, in association with the American Epilepsy Society and the American Association of Neurological Surgeons. Neurology (2003) 4.08

Polymorphic sites and the mechanism of evolution in human mitochondrial DNA. Genetics (1984) 4.00

Molecular evolution in Drosophila and the higher Diptera II. A time scale for fly evolution. J Mol Evol (1984) 3.98

Evolutionary tree for apes and humans based on cleavage maps of mitochondrial DNA. Proc Natl Acad Sci U S A (1981) 3.93

A molecular time scale for human evolution. Proc Natl Acad Sci U S A (1969) 3.89

DNA sequences from the quagga, an extinct member of the horse family. Nature (1984) 3.86

Adaptive evolution in the stomach lysozymes of foregut fermenters. Nature (1987) 3.78

Immunological time scale for hominid evolution. Science (1967) 3.76

Two types of molecular evolution. Evidence from studies of interspecific hybridization. Proc Natl Acad Sci U S A (1974) 3.69

Ancient DNA and the polymerase chain reaction. The emerging field of molecular archaeology. J Biol Chem (1989) 3.44

Mitochondrial DNA sequences from a 7000-year old brain. Nucleic Acids Res (1988) 3.38

Toward a more accurate time scale for the human mitochondrial DNA tree. J Mol Evol (1993) 3.23

Albumin phylogeny for clawed frogs (Xenopus). Science (1977) 3.12

Microtubules in the microspikes and cortical cytoplasm of isolated cells. J Cell Biol (1966) 2.97

The importance of gene rearrangement in evolution: evidence from studies on rates of chromosomal, protein, and anatomical evolution. Proc Natl Acad Sci U S A (1974) 2.97

Flow of mitochondrial DNA across a species boundary. Proc Natl Acad Sci U S A (1983) 2.91

Mitochondrial DNA evolution in mice. Genetics (1983) 2.91

The dependence of immunological cross-reactivity upon sequence resemblance among lysozymes. II. Comparison of precipitin and micro-complement fixation results. J Biol Chem (1971) 2.90

Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila. J Mol Evol (1987) 2.88

Evidence from mtDNA sequences that common laboratory strains of inbred mice are descended from a single female. Nature (1982) 2.85

A single-point mutation in HCF causes temperature-sensitive cell-cycle arrest and disrupts VP16 function. Genes Dev (1997) 2.84

Transient symptomatic hypotension in patients on simvastatin. Lancet (1989) 2.67

Enzyme evolution in the Enterobacteriaceae. J Bacteriol (1972) 2.65

Construction of phylogenetic trees for proteins and nucleic acids: empirical evaluation of alternative matrix methods. J Mol Evol (1978) 2.62

The dependence of immunological cross-reactivity upon sequence resemblance among lysozymes. I. Micro-complement fixation studies. J Biol Chem (1971) 2.60

The Nerve Fiber as a System in Continuous Flow: Microcinematographic and Electronmicroscopic Demonstrations. Science (1962) 2.54

Randomized phase III study 306: adjunctive perampanel for refractory partial-onset seizures. Neurology (2012) 2.45

Calibration of mitochondrial DNA evolution in geese. J Mol Evol (1987) 2.41

Dietary restriction reduces insulin-like growth factor I levels, which modulates apoptosis, cell proliferation, and tumor progression in p53-deficient mice. Cancer Res (1997) 2.34

Generation time and genomic evolution in primates. Science (1973) 2.34

Effects of reduced sodium intake on hypertension control in older individuals: results from the Trial of Nonpharmacologic Interventions in the Elderly (TONE). Arch Intern Med (2001) 2.33

Independent origins of New Zealand moas and kiwis. Proc Natl Acad Sci U S A (1992) 2.29

Comparative immunological studies of two Pseudomonas enzymes. J Bacteriol (1970) 2.27

Maternal inheritance of mitochondrial DNA during backcrossing of two species of mice. J Hered (1985) 2.15

Ancestral lysozymes reconstructed, neutrality tested, and thermostability linked to hydrocarbon packing. Nature (1990) 2.14

Birds, behavior, and anatomical evolution. Proc Natl Acad Sci U S A (1983) 2.14

Rate of sequence divergence estimated from restriction maps of mitochondrial DNAs from Papua New Guinea. Cold Spring Harb Symp Quant Biol (1986) 2.13

Allelic variation in human mitochondrial genes based on patterns of restriction site polymorphism. Proc Natl Acad Sci U S A (1986) 2.13

Multiple forms of supernatant malate dehydrogenase in salmonid fishes. J Biol Chem (1970) 2.12

DNA phylogeny of the extinct marsupial wolf. Nature (1989) 2.07

Rates of albumin evolution in primates. Proc Natl Acad Sci U S A (1967) 2.07

Practice Parameter: evaluating an apparent unprovoked first seizure in adults (an evidence-based review): report of the Quality Standards Subcommittee of the American Academy of Neurology and the American Epilepsy Society. Neurology (2007) 2.04

Evolution of maize inferred from sequence diversity of an Adh2 gene segment from archaeological specimens. Proc Natl Acad Sci U S A (1993) 2.01

Wormy mice in a hybrid zone. Nature (2002) 1.96

Carboxy terminus of human herpesvirus 8 latency-associated nuclear antigen mediates dimerization, transcriptional repression, and targeting to nuclear bodies. J Virol (2000) 1.96

Quantitative immunochemistry and the evolution of primate albumins: micro-complement fixation. Science (1966) 1.93

Ancient origin of lactalbumin from lysozyme: analysis of DNA and amino acid sequences. J Mol Evol (1988) 1.92

Rapid speciation and chromosomal evolution in mammals. Proc Natl Acad Sci U S A (1977) 1.92

Nontuberculous mycobacteria in bronchiectasis: Prevalence and patient characteristics. Eur Respir J (2006) 1.91

Statistical issues in analyzing 24-hour dietary recall and 24-hour urine collection data for sodium and potassium intakes. Am J Epidemiol (2001) 1.90

Mapping the antigenic epitope for a monoclonal antibody against lysozyme. J Immunol (1982) 1.87

Impact of availability of hospital-based invasive cardiac services on racial differences in the use of these services. Am Heart J (1999) 1.85

Biopsy forceps is inadequate for the resection of diminutive polyps. Endoscopy (2011) 1.82

Extensive polymorphism in the mitochondrial DNA of apes. Proc Natl Acad Sci U S A (1981) 1.81

Demonstration of axonal flow by the movement of tritium-labeled protein in mature optic nerve fibers. Proc Natl Acad Sci U S A (1965) 1.78

Brain-derived neurotrophic factor modulates nociceptive sensory inputs and NMDA-evoked responses in the rat spinal cord. J Neurosci (1999) 1.77

Conformational mutation in human mtDNA detected by direct sequencing of enzymatically amplified DNA. Nucleic Acids Res (1988) 1.74

Detection of Trichomonas vaginalis in pregnant women with the InPouch TV culture system. J Clin Microbiol (1993) 1.68

Impact of geographic proximity to cardiac revascularization services on service utilization. Med Care (2000) 1.66

Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens. J Mol Evol (1990) 1.65

Stomach lysozyme gene of the langur monkey: tests for convergence and positive selection. J Mol Evol (1991) 1.62

Rates of nuclear DNA evolution in pheasant-like birds: evidence from restriction maps. Proc Natl Acad Sci U S A (1986) 1.60

Misconceptions about cholesterol. N Z Med J (1990) 1.60

Mount St Helens eruptions, May 18 to June 12, 1980. An overview of the acute health impact. JAMA (1981) 1.59

Arterial blood nicotine concentration and coronary vasoconstrictive effect of low-nicotine cigarette smoking. Am Heart J (1992) 1.58

Health education and knowledge assessment of HTLV-III diseases among intravenous drug users. Health Educ Q (1986) 1.58

Albumin evolution in frogs: a test of the evolutionary clock hypothesis. Proc Natl Acad Sci U S A (1971) 1.57

Time trends in the occurrence and outcome of acute myocardial infarction and coronary heart disease death between 1986 and 1996 (a New Jersey statewide study). Am J Cardiol (2001) 1.56

Home oxygen for children with acute bronchiolitis. Arch Dis Child (2008) 1.55

Diabetes mellitus, a predictor of morbidity and mortality in the Studies of Left Ventricular Dysfunction (SOLVD) Trials and Registry. Am J Cardiol (1996) 1.55

Infant astigmatism: its disappearance with age. Vision Res (1980) 1.55

The basic helix-loop-helix transcription factor HESR1 regulates endothelial cell tube formation. J Biol Chem (2000) 1.55

Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes. Nature (1987) 1.54

Sex differences in the management and long-term outcome of acute myocardial infarction. A statewide study. MIDAS Study Group. Myocardial Infarction Data Acquisition System. Circulation (1994) 1.54

Social structuring of mammalian populations and rate of chromosomal evolution. Proc Natl Acad Sci U S A (1975) 1.52

Retracted Mitochondrial resolution of a deep branch in the genealogical tree for perching birds. Proc Biol Sci (1991) 1.51

Identification of the cyclin D1 gene as a target of activating transcription factor 2 in chondrocytes. Proc Natl Acad Sci U S A (1999) 1.50