Published in Genome Res on December 01, 2000
The analysis of large-scale gene expression correlated to the phase changes of the migratory locust. Proc Natl Acad Sci U S A (2004) 2.26
Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proc Natl Acad Sci U S A (2008) 2.26
Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development. BMC Genomics (2009) 2.21
A global assembly of cotton ESTs. Genome Res (2006) 2.18
Initial symbiont contact orchestrates host-organ-wide transcriptional changes that prime tissue colonization. Cell Host Microbe (2013) 2.04
Overdispersed logistic regression for SAGE: modelling multiple groups and covariates. BMC Bioinformatics (2004) 2.01
Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton. Plant J (2006) 2.01
Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis. Nucleic Acids Res (2002) 1.99
Genome-wide identification of nodule-specific transcripts in the model legume Medicago truncatula. Plant Physiol (2002) 1.89
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics (2010) 1.88
Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation. Plant Cell (2011) 1.88
Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters. Genome Biol (2006) 1.87
Comparative analyses of potato expressed sequence tag libraries. Plant Physiol (2003) 1.84
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol J (2011) 1.66
Characterizing the grape transcriptome. Analysis of expressed sequence tags from multiple Vitis species and development of a compendium of gene expression during berry development. Plant Physiol (2005) 1.65
A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics (2009) 1.61
Oil palm (Elaeis guineensis Jacq.) tissue culture ESTs: identifying genes associated with callogenesis and embryogenesis. BMC Plant Biol (2008) 1.57
The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.). BMC Plant Biol (2010) 1.43
Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera). Genome Biol (2006) 1.38
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries. BMC Bioinformatics (2005) 1.35
Long serial analysis of gene expression for gene discovery and transcriptome profiling in the widespread marine coccolithophore Emiliania huxleyi. Appl Environ Microbiol (2006) 1.32
Evolution and microsynteny of the apyrase gene family in three legume genomes. Mol Genet Genomics (2003) 1.30
Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles. BMC Genomics (2011) 1.28
Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation. Genome Biol (2012) 1.27
Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus. Plant Physiol (2007) 1.27
Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiol (2005) 1.27
Laser microdissection unravels cell-type-specific transcription in arbuscular mycorrhizal roots, including CAAT-box transcription factor gene expression correlating with fungal contact and spread. Plant Physiol (2011) 1.26
Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design. BMC Genomics (2007) 1.26
Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection. BMC Dev Biol (2008) 1.21
Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome. BMC Plant Biol (2011) 1.21
The fat body transcriptomes of the yellow fever mosquito Aedes aegypti, pre- and post- blood meal. PLoS One (2011) 1.18
Comparative functional genomic analysis of Solanum glandular trichome types. Plant Physiol (2010) 1.18
Heart-specific genes revealed by expressed sequence tag (EST) sampling. Genome Biol (2002) 1.18
Nonrandom representation of sex-biased genes on chicken Z chromosome. J Mol Evol (2006) 1.16
Methods for transcriptional profiling in plants. Be fruitful and replicate. Plant Physiol (2004) 1.14
Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon. BMC Genomics (2011) 1.13
De novo assembly, functional annotation and comparative analysis of Withania somnifera leaf and root transcriptomes to identify putative genes involved in the withanolides biosynthesis. PLoS One (2013) 1.11
Analysis and functional annotation of expressed sequence tags (ESTs) from multiple tissues of oil palm (Elaeis guineensis Jacq.). BMC Genomics (2007) 1.10
A novel method of differential gene expression analysis using multiple cDNA libraries applied to the identification of tumour endothelial genes. BMC Genomics (2008) 1.10
Update of the Diatom EST Database: a new tool for digital transcriptomics. Nucleic Acids Res (2008) 1.10
Profiling Schistosoma mansoni development using serial analysis of gene expression (SAGE). Exp Parasitol (2007) 1.07
Comparative analysis of expressed genes from cacao meristems infected by Moniliophthora perniciosa. Ann Bot (2007) 1.06
PAVE: program for assembling and viewing ESTs. BMC Genomics (2009) 1.05
Gene discovery and transcript analyses in the corn smut pathogen Ustilago maydis: expressed sequence tag and genome sequence comparison. BMC Genomics (2007) 1.05
Digital expression profiling of novel diatom transcripts provides insight into their biological functions. Genome Biol (2010) 1.03
Transcriptome analyses of the Giardia lamblia life cycle. Mol Biochem Parasitol (2010) 1.02
Nutrient-regulated transcriptional responses in the brown tide-forming alga Aureococcus anophagefferens. Environ Microbiol (2010) 1.02
Identification and confirmation of a module of coexpressed genes. Genome Res (2002) 1.01
Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts. Plant Physiol (2005) 0.98
TrichOME: a comparative omics database for plant trichomes. Plant Physiol (2009) 0.98
EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human. Mamm Genome (2003) 0.98
In vitro generation of human high-density-lipoprotein-resistant Trypanosoma brucei brucei. Eukaryot Cell (2006) 0.97
Cytoskeletal rearrangements in synovial fibroblasts as a novel pathophysiological determinant of modeled rheumatoid arthritis. PLoS Genet (2005) 0.97
Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue. BMC Genomics (2006) 0.96
Transcriptomic analysis of grain amaranth (Amaranthus hypochondriacus) using 454 pyrosequencing: comparison with A. tuberculatus, expression profiling in stems and in response to biotic and abiotic stress. BMC Genomics (2011) 0.96
Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective. BMC Genomics (2012) 0.95
Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms. Mol Biol Evol (2011) 0.95
Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. PLoS One (2012) 0.95
Transcriptome analysis of differentially expressed genes relevant to variegation in peach flowers. PLoS One (2014) 0.94
Evolution, expansion and expression of the Kunitz/BPTI gene family associated with long-term blood feeding in Ixodes Scapularis. BMC Evol Biol (2012) 0.93
Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing. BMC Genomics (2013) 0.93
Host gene response to endosymbiont and pathogen in the cereal weevil Sitophilus oryzae. BMC Microbiol (2012) 0.93
Profiling of infection specific mRNA transcripts of the European seabass Dicentrarchus labrax. BMC Genomics (2009) 0.93
Non-coding RNAs revealed during identification of genes involved in chicken immune responses. Immunogenetics (2008) 0.91
Transcriptome analysis of Schistosoma mansoni larval development using serial analysis of gene expression (SAGE). Parasitology (2009) 0.91
A resource for transcriptomic analysis in the mouse brain. PLoS One (2008) 0.91
Genome wide expression profiling of two accession of G. herbaceum L. in response to drought. BMC Genomics (2012) 0.91
An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora. BMC Plant Biol (2011) 0.91
Transcriptome analysis of the differentially expressed genes in the male and female shrub willows (Salix suchowensis). PLoS One (2013) 0.91
Identifying transcriptional regulatory sites in the human genome using an integrated system. Nucleic Acids Res (2004) 0.90
Differential gene expression in abdomens of the malaria vector mosquito, Anopheles gambiae, after sugar feeding, blood feeding and Plasmodium berghei infection. BMC Genomics (2006) 0.90
Comparative transcriptomic analysis of roots of contrasting Gossypium herbaceum genotypes revealing adaptation to drought. BMC Genomics (2012) 0.90
Feminizing Wolbachia: a transcriptomics approach with insights on the immune response genes in Armadillidium vulgare. BMC Microbiol (2012) 0.89
Distinct profiles of expressed sequence tags during intestinal regeneration in the sea cucumber Holothuria glaberrima. Physiol Genomics (2007) 0.89
Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets. BMC Plant Biol (2011) 0.88
Characterization of European sea bass transcripts by RNA SEQ after oral vaccine against V. anguillarum. Mar Biotechnol (NY) (2012) 0.88
Polyphenism in social insects: insights from a transcriptome-wide analysis of gene expression in the life stages of the key pollinator, Bombus terrestris. BMC Genomics (2011) 0.88
Basic properties and information theory of Audic-Claverie statistic for analyzing cDNA arrays. BMC Bioinformatics (2009) 0.87
IrSPI, a tick serine protease inhibitor involved in tick feeding and Bartonella henselae infection. PLoS Negl Trop Dis (2014) 0.87
An injury-response mechanism conserved across kingdoms determines entry of the fungus Trichoderma atroviride into development. Proc Natl Acad Sci U S A (2012) 0.87
Gene expression profiling and identification of resistance genes to Aspergillus flavus infection in peanut through EST and microarray strategies. Toxins (Basel) (2011) 0.86
Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process. BMC Plant Biol (2014) 0.86
Overexpression of the disease resistance gene Pto in tomato induces gene expression changes similar to immune responses in human and fruitfly. Plant Physiol (2003) 0.85
Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae). BMC Genomics (2009) 0.84
Bioinformatic and molecular analysis of hydroxymethylbutenyl diphosphate synthase (GCPE) gene expression during carotenoid accumulation in ripening tomato fruit. Planta (2003) 0.84
Comparative analysis of expressed sequence tags from three castes and two life stages of the termite Reticulitermes flavipes. BMC Genomics (2010) 0.84
An atypical proprotein convertase in Giardia lamblia differentiation. Mol Biochem Parasitol (2010) 0.84
AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis. New Phytol (2014) 0.84
Comparative transcriptome analysis using high papaverine mutant of Papaver somniferum reveals pathway and uncharacterized steps of papaverine biosynthesis. PLoS One (2013) 0.84
The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. BMC Genomics (2015) 0.84
Deep sequencing of the Mexican avocado transcriptome, an ancient angiosperm with a high content of fatty acids. BMC Genomics (2015) 0.83
A new procedure for determining the genetic basis of a physiological process in a non-model species, illustrated by cold induced angiogenesis in the carp. BMC Genomics (2009) 0.82
TCW: transcriptome computational workbench. PLoS One (2013) 0.82
Comparative transcriptome analysis of different chemotypes elucidates withanolide biosynthesis pathway from medicinal plant Withania somnifera. Sci Rep (2015) 0.82
Using the DFCI gene index databases for biological discovery. Curr Protoc Bioinformatics (2010) 0.81
Nitric oxide-dependent changes in Schistosoma mansoni gene expression. Mol Biochem Parasitol (2006) 0.81
Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula. ISME J (2015) 0.81
Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis). BMC Plant Biol (2011) 0.81
Identification and Characterization of the Iridoid Synthase Involved in Oleuropein Biosynthesis in Olive (Olea europaea) Fruits. J Biol Chem (2015) 0.81
Comparative analysis of transcription factor gene families from Papaver somniferum: identification of regulatory factors involved in benzylisoquinoline alkaloid biosynthesis. Protoplasma (2015) 0.80
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