Comparative transcriptome analysis of different chemotypes elucidates withanolide biosynthesis pathway from medicinal plant Withania somnifera.

PubWeight™: 0.82‹?›

🔗 View Article (PMID 26688389)

Published in Sci Rep on December 21, 2015

Authors

Parul Gupta1, Ridhi Goel1,2, Aditya Vikram Agarwal1, Mehar Hasan Asif1,2, Neelam Singh Sangwan3, Rajender Singh Sangwan3, Prabodh Kumar Trivedi1,2

Author Affiliations

1: CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow-226 001, INDIA.
2: Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, NewDelhi-110001, INDIA.
3: CSIR-Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP), Lucknow-226015, INDIA.

Articles cited by this

Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27

Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A (1998) 192.97

KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res (2007) 29.46

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature (2003) 10.65

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell (2004) 6.52

An evolving hierarchical family classification for glycosyltransferases. J Mol Biol (2003) 6.48

Virus-induced gene silencing in tomato. Plant J (2002) 5.55

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC Genomics (2010) 3.84

Comparing de novo assemblers for 454 transcriptome data. BMC Genomics (2010) 3.49

Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics (2000) 3.39

The comparison of gene expression from multiple cDNA libraries. Genome Res (2000) 3.28

De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis. BMC Genomics (2010) 2.41

Phylogenetic analysis of the UDP-glycosyltransferase multigene family of Arabidopsis thaliana. J Biol Chem (2000) 1.86

Steroidal lactones from Withania somnifera, an ancient plant for novel medicine. Molecules (2009) 1.80

Natural withanolides: an overview. Nat Prod Rep (2011) 1.64

Notch-1 inhibition by Withaferin-A: a therapeutic target against colon carcinogenesis. Mol Cancer Ther (2010) 1.45

Generation and comparison of EST-derived SSRs and SNPs in barley (Hordeum vulgare L.). Hereditas (2001) 1.20

EST analysis reveals putative genes involved in glycyrrhizin biosynthesis. BMC Genomics (2010) 1.13

De novo assembly, functional annotation and comparative analysis of Withania somnifera leaf and root transcriptomes to identify putative genes involved in the withanolides biosynthesis. PLoS One (2013) 1.11

Withaferin A: a proteasomal inhibitor promotes healing after injury and exerts anabolic effect on osteoporotic bone. Cell Death Dis (2013) 1.09

Metabolic clustering of a core collection of Indian ginseng Withania somnifera Dunal through DNA, isoenzyme, polypeptide and withanolide profile diversity. Fitoterapia (2009) 1.07

Generation and gene ontology based analysis of expressed sequence tags (EST) from a Panax ginseng C. A. Meyer roots. Mol Biol Rep (2009) 1.03

Withanolide biosynthesis recruits both mevalonate and DOXP pathways of isoprenogenesis in Ashwagandha Withania somnifera L. (Dunal). Plant Cell Rep (2012) 1.02

Comprehensive metabolic fingerprinting of Withania somnifera leaf and root extracts. Phytochemistry (2010) 1.01

Withanolide A is inherently de novo biosynthesized in roots of the medicinal plant Ashwagandha (Withania somnifera). Physiol Plant (2008) 1.01

Integration of deep transcript and targeted metabolite profiles for eight cultivars of opium poppy. Plant Mol Biol (2012) 1.00

Scientific basis for the use of Indian ayurvedic medicinal plants in the treatment of neurodegenerative disorders: ashwagandha. Cent Nerv Syst Agents Med Chem (2010) 0.96

Cloning and characterization of 2-C-methyl-D-erythritol-4-phosphate pathway genes for isoprenoid biosynthesis from Indian ginseng, Withania somnifera. Protoplasma (2012) 0.96

De novo sequence assembly and characterization of Lycoris aurea transcriptome using GS FLX titanium platform of 454 pyrosequencing. PLoS One (2013) 0.96

Withanolides from Withania somnifera roots. Phytochemistry (2007) 0.94

Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content. Sci Rep (2014) 0.94

Sterol glycosyltransferases-identification of members of gene family and their role in stress in Withania somnifera. Mol Biol Rep (2012) 0.93

Cloning and functional characterization of 3-hydroxy-3-methylglutaryl coenzyme A reductase gene from Withania somnifera: an important medicinal plant. Protoplasma (2012) 0.92

Functional genomics of a living fossil tree, Ginkgo, based on next-generation sequencing technology. Physiol Plant (2011) 0.91

Characterization of Withania somnifera leaf transcriptome and expression analysis of pathogenesis-related genes during salicylic acid signaling. PLoS One (2014) 0.91

Development of AtMYB12-expressing transgenic tobacco callus culture for production of rutin with biopesticidal potential. Plant Cell Rep (2012) 0.90

CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data. BMC Bioinformatics (2014) 0.89

AtMYB12 expression in tomato leads to large scale differential modulation in transcriptome and flavonoid content in leaf and fruit tissues. Sci Rep (2015) 0.88

Virus-induced gene silencing of Withania somnifera squalene synthase negatively regulates sterol and defence-related genes resulting in reduced withanolides and biotic stress tolerance. Plant Biotechnol J (2015) 0.87

Constitutive expression of Arabidopsis MYB transcription factor, AtMYB11, in tobacco modulates flavonoid biosynthesis in favor of flavonol accumulation. Plant Cell Rep (2015) 0.85

Quantitative real-time PCR-based analysis of gene expression. Methods Enzymol (2011) 0.84

Comparative transcriptome analysis using high papaverine mutant of Papaver somniferum reveals pathway and uncharacterized steps of papaverine biosynthesis. PLoS One (2013) 0.84

Comparative interactions of withanolides and sterols with two members of sterol glycosyltransferases from Withania somnifera. BMC Bioinformatics (2015) 0.81

Comparative analysis of transcription factor gene families from Papaver somniferum: identification of regulatory factors involved in benzylisoquinoline alkaloid biosynthesis. Protoplasma (2015) 0.80

Species-specific expansion and molecular evolution of the 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGR) gene family in plants. PLoS One (2014) 0.78

Classification and characterization of putative cytochrome P450 genes from Panax ginseng C. A. Meyer. Biochemistry (Mosc) (2011) 0.78