PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB).

A series of PDB related databases for everyday needs. Nucleic Acids Res (2010) 3.60

PISCES: recent improvements to a PDB sequence culling server. Nucleic Acids Res (2005) 3.55

Translationally optimal codons associate with structurally sensitive sites in proteins. Mol Biol Evol (2009) 1.96

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003. Nucleic Acids Res (2003) 1.43

Use of a structural alphabet for analysis of short loops connecting repetitive structures. BMC Bioinformatics (2004) 1.19

TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins. Nucleic Acids Res (2005) 1.10

New assessment of a structural alphabet. In Silico Biol (2005) 1.05

TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins. BMC Bioinformatics (2005) 1.03

Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship. Protein Sci (2002) 0.99

PredyFlexy: flexibility and local structure prediction from sequence. Nucleic Acids Res (2012) 0.94

Nh3D: a reference dataset of non-homologous protein structures. BMC Struct Biol (2005) 0.93

A reduced amino acid alphabet for understanding and designing protein adaptation to mutation. Eur Biophys J (2007) 0.92

Automated alphabet reduction for protein datasets. BMC Bioinformatics (2009) 0.92

MUFOLD-DB: a processed protein structure database for protein structure prediction and analysis. BMC Genomics (2014) 0.91

Retracted Prediction of the disulfide-bonding state of cysteines in proteins at 88% accuracy. Protein Sci (2002) 0.87

Predicting protein flexibility through the prediction of local structures. Proteins (2010) 0.87

Deciphering the preference and predicting the viability of circular permutations in proteins. PLoS One (2012) 0.85

A new prediction strategy for long local protein structures using an original description. Proteins (2009) 0.85

Word decoding of protein amino Acid sequences with availability analysis: a linguistic approach. PLoS One (2012) 0.82

Protein beta-sheet nucleation is driven by local modular formation. J Biol Chem (2010) 0.80

Folding by numbers: primary sequence statistics and their use in studying protein folding. Int J Mol Sci (2009) 0.79

Enhanced Allergic Inflammation of Der p 2 Affected by Polymorphisms of MD-2 Promoter. Allergy Asthma Immunol Res (2015) 0.78

A novel hybrid method of beta-turn identification in protein using binary logistic regression and neural network. EXCLI J (2012) 0.75

A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol (1970) 155.96

The Protein Data Bank: a computer-based archival file for macromolecular structures. J Mol Biol (1977) 90.57

SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol (1995) 74.88

Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins (1991) 32.50

CATH--a hierarchic classification of protein domain structures. Structure (1997) 29.95

DBGET/LinkDB: an integrated database retrieval system. Pac Symp Biocomput (1998) 24.06

Enlarged representative set of protein structures. Protein Sci (1994) 7.98

HOMSTRAD: a database of protein structure alignments for homologous families. Protein Sci (1998) 5.62

The FSSP database of structurally aligned protein fold families. Nucleic Acids Res (1994) 4.94

Parallel Protein Information Analysis (PAPIA) System Running on a 64-Node PC Cluster. Genome Inform Ser Workshop Genome Inform (1998) 1.03

Quick selection of representative protein chain sets based on customizable requirements. Bioinformatics (2000) 1.02

LIGAND database for enzymes, compounds and reactions. Nucleic Acids Res (1999) 1.01

The transcriptional landscape of the mammalian genome. Science (2005) 37.63

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature (2002) 28.79

fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci (1994) 24.63

DBGET/LinkDB: an integrated database retrieval system. Pac Symp Biocomput (1998) 24.06

Functional annotation of a full-length mouse cDNA collection. Nature (2001) 23.61

Ohmic conductance through the inwardly rectifying K channel and blocking by internal Mg2+. Nature (1987) 5.44

Two cell lines from lymphomas of Marek's disease. Biken J (1974) 3.50

Bax interacts with the permeability transition pore to induce permeability transition and cytochrome c release in isolated mitochondria. Proc Natl Acad Sci U S A (1998) 3.35

Identification and characterization of an Escherichia coli gene required for the formation of correctly folded alkaline phosphatase, a periplasmic enzyme. EMBO J (1992) 3.08

Critical contribution of liver natural killer T cells to a murine model of hepatitis. Proc Natl Acad Sci U S A (2000) 3.03

Intracellular Na+ activates a K+ channel in mammalian cardiac cells. Nature (1984) 2.85

Familial gastrointestinal stromal tumours with germline mutation of the KIT gene. Nat Genet (1998) 2.80

Effect of c-kit mutation on prognosis of gastrointestinal stromal tumors. Cancer Res (1999) 2.61

Effects of mutations in heat-shock genes groES and groEL on protein export in Escherichia coli. EMBO J (1989) 2.53

Close association of HLA-Bw51 with Behçet's disease. Arch Ophthalmol (1982) 2.51

DNA methylation patterns in hereditary human cancers mimic sporadic tumorigenesis. Hum Mol Genet (2001) 2.50

The evolution of cooperation in a lattice-structured population. J Theor Biol (1997) 2.43

Effect of temporal fluctuation of selection coefficient on gene frequency in a population. Proc Natl Acad Sci U S A (1975) 2.41

Prevention of hypoxia-induced cell death by Bcl-2 and Bcl-xL. Nature (1995) 2.40

Inclusion of the transcervical approach in video-assisted thoracoscopic extended thymectomy (VATET) for myasthenia gravis: a prospective trial. Surg Endosc (2006) 2.39

Expression of SR-PSOX, a novel cell-surface scavenger receptor for phosphatidylserine and oxidized LDL in human atherosclerotic lesions. Arterioscler Thromb Vasc Biol (2001) 2.39

Modification of glial-neuronal cell interactions prevents photoreceptor apoptosis during light-induced retinal degeneration. Neuron (2000) 2.38

Isolation of calcium current and its sensitivity to monovalent cations in dialysed ventricular cells of guinea-pig. J Physiol (1984) 2.30

FtsH is required for proteolytic elimination of uncomplexed forms of SecY, an essential protein translocase subunit. Proc Natl Acad Sci U S A (1995) 2.18

New graft-implanting method for thoracic aortic aneurysm or dissection with a stented graft. Circulation (1996) 2.14

Novel combretastatin analogues effective against murine solid tumors: design and structure-activity relationships. J Med Chem (1998) 2.09

Pathogen invasion and host extinction in lattice structured populations. J Math Biol (1994) 2.05

Total cavopulmonary shunt operation in complex cardiac anomalies. A new operation. J Thorac Cardiovasc Surg (1984) 2.01

The SecY membrane component of the bacterial protein export machinery: analysis by new electrophoretic methods for integral membrane proteins. EMBO J (1985) 2.01

Characterization of a fission yeast SUMO-1 homologue, pmt3p, required for multiple nuclear events, including the control of telomere length and chromosome segregation. Mol Cell Biol (1999) 1.97

Changes in brain morphology in Alzheimer disease and normal aging: is Alzheimer disease an exaggerated aging process? AJNR Am J Neuroradiol (2001) 1.97

Cell growth and lambda phage development controlled by the same essential Escherichia coli gene, ftsH/hflB. Proc Natl Acad Sci U S A (1993) 1.97

Evolutionarily stable mutation rate in a periodically changing environment. Genetics (1989) 1.96

Bcl-2 prevents apoptotic mitochondrial dysfunction by regulating proton flux. Proc Natl Acad Sci U S A (1998) 1.92

A protease complex in the Escherichia coli plasma membrane: HflKC (HflA) forms a complex with FtsH (HflB), regulating its proteolytic activity against SecY. EMBO J (1996) 1.91

Myocardial protection from ischemia/reperfusion injury by endogenous and exogenous HGF. J Clin Invest (2000) 1.90

Bcl-2 blocks loss of mitochondrial membrane potential while ICE inhibitors act at a different step during inhibition of death induced by respiratory chain inhibitors. Oncogene (1996) 1.86

Induction of apoptosis as well as necrosis by hypoxia and predominant prevention of apoptosis by Bcl-2 and Bcl-XL. Cancer Res (1996) 1.84

A potential cardioprotective role of hepatocyte growth factor in myocardial infarction in rats. Cardiovasc Res (2001) 1.84

Evaluation of the therapeutic effect of radiotherapy on cervical cancer using magnetic resonance imaging. Int J Radiat Oncol Biol Phys (1999) 1.82

Critical contribution of OX40 ligand to T helper cell type 2 differentiation in experimental leishmaniasis. J Exp Med (2000) 1.77

IL-6 stimulates osteoclast-like multinucleated cell formation in long term human marrow cultures by inducing IL-1 release. J Immunol (1990) 1.77

Surgical results for small cell lung cancer based on the new TNM staging system. Thoracic Surgery Study Group of Osaka University, Osaka, Japan. Ann Thorac Surg (2000) 1.71

SOX2 is frequently downregulated in gastric cancers and inhibits cell growth through cell-cycle arrest and apoptosis. Br J Cancer (2008) 1.70

Experimental metastasis is suppressed in MMP-9-deficient mice. Clin Exp Metastasis (1999) 1.70

Abnormal regional cerebral blood flow in childhood autism. Brain (2000) 1.69

Longitudinal evaluation of early Alzheimer's disease using brain perfusion SPECT. J Nucl Med (2000) 1.69

Functional anatomy of musical perception in musicians. Cereb Cortex (2001) 1.67

In vivo analysis of integration of membrane proteins in Escherichia coli. Mol Microbiol (1991) 1.65

Nucleotide sequences of fic and fic-1 genes involved in cell filamentation induced by cyclic AMP in Escherichia coli. J Bacteriol (1989) 1.65

Characterization of cold-sensitive secY mutants of Escherichia coli. J Bacteriol (1990) 1.63

Reduction of resuscitation fluid volumes in severely burned patients using ascorbic acid administration: a randomized, prospective study. Arch Surg (2000) 1.63

Left ventricular ejection performance, wall stress, and contractile state in aortic regurgitation before and after aortic valve replacement. Circulation (1990) 1.56

Age-related accumulation of LFA-1high cells in a CD8+CD45RAhigh T cell population. Eur J Immunol (1993) 1.56

Redox states of DsbA in the periplasm of Escherichia coli. FEBS Lett (1995) 1.56

Transient depolarization and spontaneous voltage fluctuations in isolated single cells from guinea pig ventricles. Calcium-mediated membrane potential fluctuations. Circ Res (1982) 1.56

Lugol-combined endoscopic detection of minute malignant lesions of the thoracic esophagus. Ann Surg (1988) 1.52

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping. Nucleic Acids Res (2000) 1.52

HPA axis normalization, estimated by DEX/CRH test, but less alteration on cerebral glucose metabolism in depressed patients receiving ECT after medication treatment failures. Acta Psychiatr Scand (2005) 1.51

The estimation of the postmenstrual age: a comprehensive review. Dev Med Child Neurol (1970) 1.50

Treatment of nevus Ota: combined skin abrasion and carbon dioxide snow method. Plast Reconstr Surg (1996) 1.49

Retardation of chemical hypoxia-induced necrotic cell death by Bcl-2 and ICE inhibitors: possible involvement of common mediators in apoptotic and necrotic signal transductions. Oncogene (1996) 1.48

Evaluation of right ventricular function by regional wall motion analysis in patients after correction of tetralogy of Fallot. Comparison of transventricular and nontransventricular repairs. J Thorac Cardiovasc Surg (1992) 1.48

Spool-like stent for the open sternum after cardiac operations. Ann Thorac Surg (1997) 1.47

Myocardial velocity gradient as a new indicator of regional left ventricular contraction: detection by a two-dimensional tissue Doppler imaging technique. J Am Coll Cardiol (1995) 1.46

Transplantation of an acutely isolated bone marrow fraction repairs demyelinated adult rat spinal cord axons. Glia (2001) 1.45

HNPCC associated with germline mutation in the TGF-beta type II receptor gene. Nat Genet (1998) 1.45

Determinants of the quantity of the stable SecY complex in the Escherichia coli cell. J Bacteriol (1993) 1.44

Surgical rescue for life-threatening hypoxemia caused by a mediastinal tumor. Ann Thorac Surg (1999) 1.43

Differential in vivo roles played by DsbA and DsbC in the formation of protein disulfide bonds. J Biol Chem (1997) 1.42

Transitional mucosa in human colorectal lesions. Dis Colon Rectum (1990) 1.42

Distribution of mast-cell precursors in hematopoeitic and lymphopoietic tissues of mice. J Exp Med (1979) 1.41

Vascular tone in patients with hemorrhagic shock. J Trauma (1999) 1.41

Reduction of progressive burn injury by using a new nonselective endothelin-A and endothelin-B receptor antagonist, TAK-044: an experimental study in rats. Plast Reconstr Surg (1997) 1.40

Interleukin-6 is a potent thrombopoietic factor in vivo in mice. Blood (1989) 1.40

Bcl-2 expression prevents activation of the ICE protease cascade. Oncogene (1996) 1.40

Genetic analysis of SecY: additional export-defective mutations and factors affecting their phenotypes. Mol Gen Genet (1994) 1.40

The role of prostaglandins in the endothelium-mediated vasodilatory response to hypoxia. Pflugers Arch (1984) 1.39

Down's syndrome and acute leukemia in children: an analysis of phenotype by use of monoclonal antibodies and electron microscopic platelet peroxidase reaction. Blood (1990) 1.39

Effectiveness of epidural anesthesia for external cephalic version (ECV). J Perinatol (2010) 1.38

Focal fatty liver change in a 12-year-old Japanese boy. Eur J Pediatr (1994) 1.38

Efficient gene transfer method into the whole heart through the coronary artery with hemagglutinating virus of Japan liposome. J Thorac Cardiovasc Surg (1997) 1.37

The role of mast cells in inflammatory processes: evidence for nerve/mast cell interactions. Int Arch Allergy Appl Immunol (1987) 1.34

Comparison of image validity between cone beam computed tomography for dental use and multidetector row helical computed tomography. Dentomaxillofac Radiol (2007) 1.33

Detection of gamma interferon in the sera of patients with Behçet's disease. Infect Immun (1982) 1.33

Quantitative and reversible lectin-induced association of gold nanoparticles modified with alpha-lactosyl-omega-mercapto-poly(ethylene glycol). J Am Chem Soc (2001) 1.32

Different pathways for protein degradation by the FtsH/HflKC membrane-embedded protease complex: an implication from the interference by a mutant form of a new substrate protein, YccA. J Mol Biol (1998) 1.31

Spleen colony-forming cell as common precursor for tissue mast cells and granulocytes. Nature (1981) 1.31

Host regulation of lysogenic decision in bacteriophage lambda: transmembrane modulation of FtsH (HflB), the cII degrading protease, by HflKC (HflA). Proc Natl Acad Sci U S A (1997) 1.31

Nitric oxide: a modulator, but not a mediator, of neurovascular coupling in rat somatosensory cortex. Am J Physiol (1999) 1.30

High preoperative plasma D-dimer level is associated with advanced tumor stage and short survival after curative resection in patients with colorectal cancer. Jpn J Clin Oncol (2001) 1.29

Both CD45RA+ and CD45RA- subpopulations of CD8+ T cells contain cells with high levels of lymphocyte function-associated antigen-1 expression, a phenotype of primed T cells. J Immunol (1993) 1.29

Prevention of graft coronary arteriosclerosis by antisense cdk2 kinase oligonucleotide. Nat Med (1997) 1.28

Involvement of CPP32/Yama(-like) proteases in Fas-mediated apoptosis. Cancer Res (1996) 1.28

Release of phospholipids from complement-mediated lesions on the surface structure of Escherichia coli. J Immunol (1977) 1.27

Diverse effects of the MalE-LacZ hybrid protein on Escherichia coli cell physiology. J Bacteriol (1986) 1.27

Lugol staining pattern and histology of esophageal lesions. Am J Gastroenterol (1993) 1.25

Sodium conductance in calcium channels of guinea-pig ventricular cells induced by removal of external calcium ions. Pflugers Arch (1986) 1.25

Complete versus assisted thoracoscopic approach: a prospective randomized trial comparing a variety of video-assisted thoracoscopic lobectomy techniques. Surg Endosc (2004) 1.25

Dislocation of membrane proteins in FtsH-mediated proteolysis. EMBO J (1999) 1.24