Rapid atomic density methods for molecular shape characterization.

PubWeight™: 1.09‹?› | Rank: Top 10%

🔗 View Article (PMID 11449571)

Published in J Mol Graph Model on January 01, 2001

Authors

J C Mitchell1, R Kerr, L F Ten Eyck

Author Affiliations

1: San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Dr., La Jolla, CA, USA. mitchell@sdsc.edu

Articles citing this

Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein. J Mol Biol (2007) 1.41

Recent advances in B-cell epitope prediction methods. Immunome Res (2010) 1.26

Structure of the progesterone receptor-deoxyribonucleic acid complex: novel interactions required for binding to half-site response elements. Mol Endocrinol (2006) 1.26

KFC Server: interactive forecasting of protein interaction hot spots. Nucleic Acids Res (2008) 1.16

Crystal structure of QscR, a Pseudomonas aeruginosa quorum sensing signal receptor. Proc Natl Acad Sci U S A (2011) 1.12

Computational prediction of protein hot spot residues. Curr Pharm Des (2012) 1.11

Comparative surface geometry of the protein kinase family. Protein Sci (2009) 1.08

Structure-based predictive models for allosteric hot spots. PLoS Comput Biol (2009) 0.98

DBSI: DNA-binding site identifier. Nucleic Acids Res (2013) 0.85

Coarse grained normal mode analysis vs. refined Gaussian Network Model for protein residue-level structural fluctuations. Bull Math Biol (2013) 0.84

Structural analysis of HMGD-DNA complexes reveals influence of intercalation on sequence selectivity and DNA bending. J Mol Biol (2010) 0.83

Interactive processing and visualization of image data for biomedical and life science applications. BMC Cell Biol (2007) 0.83

Progress and challenges in predicting protein interfaces. Brief Bioinform (2015) 0.81

A semi-supervised boosting SVM for predicting hot spots at protein-protein interfaces. BMC Syst Biol (2012) 0.76

Origin of parameter degeneracy and molecular shape relationships in geometric-flow calculations of solvation free energies. J Chem Phys (2013) 0.76

Articles by these authors

(truncated to the top 100)

Structure of a peptide inhibitor bound to the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. Science (1991) 13.85

Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. Science (1991) 9.99

Protein docking using continuum electrostatics and geometric fit. Protein Eng (2001) 3.48

Structural framework for the protein kinase family. Annu Rev Cell Biol (1992) 2.74

2.2 A refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MnATP and a peptide inhibitor. Acta Crystallogr D Biol Crystallogr (1993) 2.66

cAMP-dependent protein kinase: crystallographic insights into substrate recognition and phosphotransfer. Protein Sci (1994) 2.62

Crystal structures of the myristylated catalytic subunit of cAMP-dependent protein kinase reveal open and closed conformations. Protein Sci (1993) 2.44

The protein kinase resource. Trends Biochem Sci (1997) 1.85

Structural features that specify tyrosine kinase activity deduced from homology modeling of the epidermal growth factor receptor. Proc Natl Acad Sci U S A (1993) 1.53

A binary complex of the catalytic subunit of cAMP-dependent protein kinase and adenosine further defines conformational flexibility. Structure (1997) 1.51

Do asymptomatic marathon runners have an increased prevalence of meniscal abnormalities? An MR study of the knee in 23 volunteers. AJR Am J Roentgenol (1991) 1.45

Benign and malignant cartilage tumors of bone and joint: their anatomic and theoretical basis with an emphasis on radiology, pathology and clinical biology. I. The intramedullary cartilage tumors. Skeletal Radiol (1997) 1.43

Drums begin to beat in the waiting list jungle. Br Med J (Clin Res Ed) (1987) 1.38

Serotonin modulates locomotory behavior and coordinates egg-laying and movement in Caenorhabditis elegans. J Neurobiol (2001) 1.34

600 ps molecular dynamics reveals stable substructures and flexible hinge points in cAMP dependent protein kinase. Biopolymers (1999) 1.32

Structural basis of the intrasteric regulation of myosin light chain kinases. Science (1992) 1.31

Management of the patient and family with neurofibromatosis 2: a consensus conference statement. Br J Neurosurg (2005) 1.21

Structure of the lysozyme from bacteriophage T4: an electron density map at 2.4 A resolution. J Mol Biol (1978) 1.20

Constitutive activation of extracellular signal-regulated kinase 2 by synergistic point mutations. J Biol Chem (2001) 1.18

Contralateral cerebellar hemorrhagic infarction after pterional craniotomy: report of five cases and review of the literature. Neurosurgery (1996) 1.13

A conserved helix motif complements the protein kinase core. Proc Natl Acad Sci U S A (1993) 1.10

Development, application and validation of a Taqman real-time RT-PCR assay for the detection of infectious salmon anaemia virus (ISAV) in Atlantic salmon (Salmo salar). Dev Biol (Basel) (2006) 1.08

Crystal structure of the potent natural product inhibitor balanol in complex with the catalytic subunit of cAMP-dependent protein kinase. Biochemistry (1999) 1.06

2.0 A refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with a peptide inhibitor and detergent. Acta Crystallogr D Biol Crystallogr (1993) 1.05

cAMP-dependent protein kinase defines a family of enzymes. Philos Trans R Soc Lond B Biol Sci (1993) 1.04

Malignant fibrous histiocytoma of the mandible: the importance of an accurate histopathological diagnosis. Br J Oral Maxillofac Surg (1995) 1.01

Specific and varied practice of motor skill. Percept Mot Skills (1978) 1.01

The impact of age on delivered dose intensity and hospitalizations for febrile neutropenia in patients with intermediate-grade non-Hodgkin's lymphoma receiving initial CHOP chemotherapy: a risk factor analysis. Clin Lymphoma (2001) 1.00

A paraxial exclusion zone creates patterned cranial neural crest cell outgrowth adjacent to rhombomeres 3 and 5. Dev Biol (1999) 0.99

A comparison of MRI and clinical examination of acute lateral ankle sprains. Foot Ankle Int (1996) 0.97

Sternocostoclavicular hyperostosis: a review and report of 11 cases. Radiology (1986) 0.96

Echinococcal infestation of the spine in North America. Clin Orthop Relat Res (1991) 0.94

Synaptic connections of dorsal horn group II spinal interneurons: synapses formed with the interneurons and by their axon collaterals. J Comp Neurol (1997) 0.94

Rigid domains in proteins: an algorithmic approach to their identification. Proteins (1995) 0.94

Gametic imprinting effects on rate and composition of pig growth. Theor Appl Genet (1994) 0.93

Psychosocial factors and economic recession: the Stormont Study. Occup Med (Lond) (2012) 0.91

An enhanced postnatal autoimmune profile in 24 week-old C57BL/6 mice developmentally exposed to TCDD. Toxicol Appl Pharmacol (2008) 0.91

Fast Fourier transform calculation of electron density maps. Methods Enzymol (1985) 0.90

Medial dislocation of the biceps brachii tendon: appearance at MR imaging. Radiology (1991) 0.89

Catalytic subunit of cAMP-dependent protein kinase: electrostatic features and peptide recognition. Biopolymers (1996) 0.88

Low-dose melphalan in elderly acute myeloid leukaemia: complete remissions but resistant relapse with therapy-related karyotypes. Leukemia (2000) 0.88

Characterisation of axon terminals in the rat dorsal horn that are immunoreactive for serotonin 5-HT3A receptor subunits. Exp Brain Res (2003) 0.88

Adenosine modulation of calcium currents in postganglionic neurones of avian cultured ciliary ganglia. Br J Pharmacol (1992) 0.88

Alterations in the supraspinatus tendon at MR imaging: correlation with histopathologic findings in cadavers. Radiology (1991) 0.88

Myelinated and unmyelinated primary afferent axons form contacts with cholinergic interneurons in the spinal dorsal horn. Exp Brain Res (2002) 0.87

Diffuse idiopathic skeletal hyperostosis: diagnostic significance of radiographic abnormalities of the pelvis. Radiology (1989) 0.87

DOT2: Macromolecular docking with improved biophysical models. J Comput Chem (2013) 0.86

Treatment of ingrowing toenails by surgeons and chiropodists. BMJ (1988) 0.86

A long-term study of the interaction between iron and alcohol in an animal model of iron overload. J Hepatol (1995) 0.86

Anticoagulant guidelines. Br Dent J (2013) 0.85

Fluid resuscitation in traumatic hemorrhagic shock. Crit Care Clin (1992) 0.84

High hydrostatic pressure processing of murine norovirus 1-contaminated oysters inhibits oral infection in STAT-1(-/-)-deficient female mice. J Food Prot (2011) 0.84

The Wernicke-Korsakoff syndrome: a reappraisal in Queensland with special reference to prevention. Med J Aust (1988) 0.84

Osteoarthritis of the glenohumeral joint: a radiologic-pathologic study. AJR Am J Roentgenol (1985) 0.84

Differential expression of the muscarinic m2 acetylcholine receptor by small and large motoneurons of the rat spinal cord. Brain Res (1999) 0.83

Chiasmal cavernous angioma. A rare case of progressive visual loss. Eye (Lond) (2002) 0.83

Colocalization of glycine and GABA in synapses on spinomedullary neurons. Brain Res (1995) 0.83

Comparison of a once-a-day sustained-release morphine formulation with standard oral morphine treatment for cancer pain. J Pain Symptom Manage (1997) 0.83

Multi-centre testing and validation of current protocols for the identification of Gyrodactylus salaris (Monogenea). Int J Parasitol (2010) 0.81

Some observations on the Wernicke Korsakoff syndrome in Australia. Br J Addict (1985) 0.81

Pyogenic sacroiliitis. Orthopedics (1985) 0.81

cAMP-dependent protein kinase and the protein kinase family. Faraday Discuss (1992) 0.81

Radiographic diagnosis of ankle fractures: are three views necessary? Foot Ankle Int (1994) 0.81

Hematopoietic bone marrow hyperplasia: high prevalence on MR images of the knee in asymptomatic marathon runners. AJR Am J Roentgenol (1992) 0.81

Low proliferative rate of invasive node-negative breast cancer predicts for a favorable outcome: a prospective evaluation of 669 patients. Clin Breast Cancer (2001) 0.81

Conformation-invariant structures of the alpha1beta1 human hemoglobin dimer. J Mol Biol (1997) 0.80

A confocal microscopic survey of serotoninergic axons in the lumbar spinal cord of the rat: co-localization with glutamate decarboxylase and neuropeptides. Neuroscience (1996) 0.80

The structure and stability of thermolysin. Experientia Suppl (1976) 0.80

Computerized tomography of proximal femoral trabecular patterns. J Orthop Res (1986) 0.80

Osteomyelitis and septic arthritis of the hand following human bites. Skeletal Radiol (1985) 0.80

Movement control and maturation in elementary-grade children. Percept Mot Skills (1975) 0.80

Low-grade osteosarcoma of the ethmoid sinus. Skeletal Radiol (2006) 0.80

Cell proliferation during the development of stress erosions in mouse stomach. Nature (1967) 0.79

Phase I trial of interferon gamma retroviral vector administered intratumorally with multiple courses in patients with metastatic melanoma. Hum Gene Ther (1999) 0.79

Magnetic resonance imaging and the evaluation of tarsal tunnel syndrome. Foot Ankle (1993) 0.79

Crystal structures of the catalytic subunit of cAMP-dependent protein kinase reveal general features of the protein kinase family. Receptor (1993) 0.79

An immunocytochemical investigation of the relationship between substance P and the neurokinin-1 receptor in the lateral horn of the rat thoracic spinal cord. Brain Res (1997) 0.79

Quality assurance for point-of-care testing of oral anticoagulation: a large-scale evaluation of the Hemochron Junior Signature Microcoagulation System. Int J Lab Hematol (2007) 0.78

Adenosine modulation of potassium currents in postganglionic neurones of cultured avian ciliary ganglia. Br J Pharmacol (1991) 0.78

Absence of co-localized glutamic acid decarboxylase and neuropeptides in noradrenergic axons of the rat spinal cord. Brain Res (1997) 0.78

Hepatitis C infection and outcomes in the Scottish haemophilia population. Haemophilia (2013) 0.77

Tendon injuries of the lower extremity: magnetic resonance assessment. Top Magn Reson Imaging (1991) 0.77

Evidence for the presence of neurokinin-1 receptors on dorsal horn spinocerebellar tract cells in the rat. Brain Res (1996) 0.77

Microcirculatory compensation to progressive atherosclerotic disease. Ann Vasc Surg (1997) 0.77

Tarsal tunnel syndrome secondary to cosmetic silicone injections. Foot Ankle (1993) 0.77

Magnetic resonance imaging of tendon and ligament abnormalities: Part I. Spine and upper extremities. Skeletal Radiol (1992) 0.76

Complications of the Angelchik antireflux prosthesis. Ann Intern Med (1984) 0.76

Glutamate receptor subunits associated with rat sympathetic preganglionic neurons. Neurosci Lett (1998) 0.76

The impact of two workplace-based health risk appraisal interventions on employee lifestyle parameters, mental health and work ability: results of a randomized controlled trial. Health Educ Res (2014) 0.76

International Subarachnoid Aneurysm Trial. J Neurosurg (1999) 0.76

Fine-needle aspiration biopsy for the measurement of hepatic iron concentration. Hepatology (1992) 0.76

Cell recruitment to the sperm granuloma which follows vasectomy in the rat. Clin Anat (1996) 0.76

Radiologic case study. Discoid lateral meniscus. Orthopedics (1986) 0.76

Down syndrome and extended practice of a complex motor task. Am J Ment Defic (1987) 0.75

Endovascular aneurysm treatment and the incidence of vasospasm. AJNR Am J Neuroradiol (1999) 0.75

Goltz syndrome. Br Dent J (2001) 0.75

Condensing osteitis of the clavicle. J Bone Joint Surg Br (1992) 0.75

Gro-ing pains. Nat Struct Biol (1995) 0.75

Persistent increase of blood lead level and suppression of δ-ALAD activity in northern bobwhite quail orally dosed with even a single 2-mm spent lead shot. Arch Environ Contam Toxicol (2012) 0.75

Exercise, aging and fine motor performance: an assessment. J Sports Med Phys Fitness (1987) 0.75