Published in Cell Mol Life Sci on October 01, 2001
3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA. Cell (2008) 4.54
Viral IRES RNA structures and ribosome interactions. Trends Biochem Sci (2008) 2.17
A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails. Genes Dev (2012) 2.13
tRNA-mRNA mimicry drives translation initiation from a viral IRES. Nat Struct Mol Biol (2007) 1.84
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming. Bioinformatics (2011) 1.59
Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs. RNA (2002) 1.50
The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits. RNA (2008) 1.29
Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus. Proc Natl Acad Sci U S A (2010) 1.23
Role of tRNA-like structures in controlling plant virus replication. Virus Res (2008) 1.22
Comparison and functional implications of the 3D architectures of viral tRNA-like structures. RNA (2009) 1.14
DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model. Nucleic Acids Res (2010) 1.12
tRNA-Related Sequences Trigger Systemic mRNA Transport in Plants. Plant Cell (2016) 1.05
tRNA-like structure regulates translation of Brome mosaic virus RNA. J Virol (2004) 0.94
Coat protein activation of alfalfa mosaic virus replication is concentration dependent. J Virol (2005) 0.93
Structural variation and functional importance of a D-loop-T-loop interaction in valine-accepting tRNA-like structures of plant viral RNAs. Nucleic Acids Res (2002) 0.88
The CCA anticodon specifies separate functions inside and outside translation in Bacillus cereus. RNA Biol (2009) 0.87
Alfalfa mosaic virus coat protein bridges RNA and RNA-dependent RNA polymerase in vitro. Virology (2007) 0.86
A pseudo-tRNA modulates antibiotic resistance in Bacillus cereus. PLoS One (2012) 0.86
Degenerate in vitro genetic selection reveals mutations that diminish alfalfa mosaic virus RNA replication without affecting coat protein binding. J Virol (2004) 0.84
Progress and outlook in structural biology of large viral RNAs. Virus Res (2014) 0.79
antaRNA--Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization. BMC Bioinformatics (2015) 0.76
Geneticin Stabilizes the Open Conformation of the 5' Region of Hepatitis C Virus RNA and Inhibits Viral Replication. Antimicrob Agents Chemother (2015) 0.75
Analysis of RNA structure using small-angle X-ray scattering. Methods (2016) 0.75
PlaMoM: a comprehensive database compiles plant mobile macromolecules. Nucleic Acids Res (2016) 0.75
Universal rules and idiosyncratic features in tRNA identity. Nucleic Acids Res (1998) 5.68
An operational RNA code for amino acids and possible relationship to genetic code. Proc Natl Acad Sci U S A (1993) 2.87
Search for characteristic structural features of mammalian mitochondrial tRNAs. RNA (2000) 2.84
Crystal structure of yeast tRNAAsp. Nature (1980) 2.61
Identity elements for specific aminoacylation of yeast tRNA(Asp) by cognate aspartyl-tRNA synthetase. Science (1991) 2.48
tRNA structure and aminoacylation efficiency. Prog Nucleic Acid Res Mol Biol (1993) 2.42
Relaxation of a transfer RNA specificity by removal of modified nucleotides. Nature (1990) 2.20
Conformation in solution of yeast tRNA(Asp) transcripts deprived of modified nucleotides. Biochimie (1990) 1.97
The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA. Nucleic Acids Res (1998) 1.92
A Watson-Crick base-pair-disrupting methyl group (m1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys. Biochemistry (1999) 1.79
Aminoacyl-tRNA synthetases: a family of expanding functions. Mittelwihr, France, October 10-15, 1999. EMBO J (1999) 1.68
Molecular recognition of the identity-determinant set of isoleucine transfer RNA from Escherichia coli. J Mol Biol (1994) 1.68
Ribozyme processed tRNA transcripts with unfriendly internal promoter for T7 RNA polymerase: production and activity. FEBS Lett (1998) 1.63
More mistakes by T7 RNA polymerase at the 5' ends of in vitro-transcribed RNAs. RNA (1999) 1.61
Tertiary structure of tRNAs in solution monitored by phosphodiester modification with ethylnitrosourea. Eur J Biochem (1981) 1.56
Factors determining the specificity of the tRNA aminoacylation reaction. Non-absolute specificity of tRNA-aminoacyl-tRNA synthetase recognition and particular importance of the maximal velocity. Biochimie (1973) 1.56
Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu. RNA (1999) 1.55
Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe. Biochemistry (1988) 1.53
Comparison of the tertiary structure of yeast tRNA(Asp) and tRNA(Phe) in solution. Chemical modification study of the bases. J Mol Biol (1987) 1.50
An unusual RNA tertiary interaction has a role for the specific aminoacylation of a transfer RNA. Proc Natl Acad Sci U S A (1993) 1.47
Solution structure of a tRNA with a large variable region: yeast tRNASer. J Mol Biol (1989) 1.47
Histidylation by yeast HisRS of tRNA or tRNA-like structure relies on residues -1 and 73 but is dependent on the RNA context. Nucleic Acids Res (1994) 1.44
Solution structure of the 3'-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs. J Mol Biol (1994) 1.44
Structure of tetragonal hen egg-white lysozyme at 0.94 A from crystals grown by the counter-diffusion method. Acta Crystallogr D Biol Crystallogr (2001) 1.42
Enzymatic formation of modified nucleosides in tRNA: dependence on tRNA architecture. J Mol Biol (1996) 1.41
Effect of modified nucleotides on Escherichia coli tRNAGlu structure and on its aminoacylation by glutamyl-tRNA synthetase. Predominant and distinct roles of the mnm5 and s2 modifications of U34. Eur J Biochem (1999) 1.40
The 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules. Structure (2000) 1.40
Antideterminants present in minihelix(Sec) hinder its recognition by prokaryotic elongation factor Tu. EMBO J (1996) 1.40
A single methyl group prevents the mischarging of a tRNA. Nat Struct Biol (1994) 1.37
Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T psi-loop of yeast tRNAs. J Mol Biol (1997) 1.35
A domain in the N-terminal extension of class IIb eukaryotic aminoacyl-tRNA synthetases is important for tRNA binding. EMBO J (2000) 1.34
3-D graphics modelling of the tRNA-like 3'-end of turnip yellow mosaic virus RNA: structural and functional implications. J Biomol Struct Dyn (1987) 1.33
Search for differences in post-transcriptional modification patterns of mitochondrial DNA-encoded wild-type and mutant human tRNALys and tRNALeu(UUR). Nucleic Acids Res (1999) 1.26
Anticodon-independent aminoacylation of an RNA minihelix with valine. Proc Natl Acad Sci U S A (1992) 1.26
Importance of conserved residues for the conformation of the T-loop in tRNAs. J Biomol Struct Dyn (1987) 1.23
Additive, cooperative and anti-cooperative effects between identity nucleotides of a tRNA. EMBO J (1993) 1.22
Efficient aminoacylation of resected RNA helices by class II aspartyl-tRNA synthetase dependent on a single nucleotide. EMBO J (1994) 1.20
Incorrect aminoacylatins catalysed by the phenylalanyl-and valyl-tRNA synthetases from yeast. Eur J Biochem (1972) 1.18
Solution structure of selenocysteine-inserting tRNA(Sec) from Escherichia coli. Comparison with canonical tRNA(Ser). J Mol Biol (1993) 1.17
Dynamic light scattering studies of the aggregation of lysozyme under crystallization conditions. FEBS Lett (1991) 1.17
Specific valylation of turnip yellow mosaic virus RNA by wheat germ valyl-tRNA synthetase determined by three anticodon loop nucleotides. Biochemistry (1992) 1.16
Aminoacyl-tRNA synthetases: a new image for a classical family. Biochimie (1999) 1.15
Diagnostic of precipitant for biomacromolecule crystallization by quasi-elastic light-scattering. J Mol Biol (1990) 1.14
Determinant nucleotides of yeast tRNA(Asp) interact directly with aspartyl-tRNA synthetase. Proc Natl Acad Sci U S A (1992) 1.14
Identity of prokaryotic and eukaryotic tRNA(Asp) for aminoacylation by aspartyl-tRNA synthetase from Thermus thermophilus. Biochemistry (1996) 1.13
Cleavage of tRNA with imidazole and spermine imidazole constructs: a new approach for probing RNA structure. Nucleic Acids Res (1995) 1.13
Interaction of tRNAPhe and tRNAVal with aminoacyl-tRNA synthetases. A chemical modification study. Eur J Biochem (1983) 1.13
Existence of two distinct aspartyl-tRNA synthetases in Thermus thermophilus. Structural and biochemical properties of the two enzymes. Biochemistry (1997) 1.13
Interaction of tRNA with tRNA (guanosine-1)methyltransferase: binding specificity determinants involve the dinucleotide G36pG37 and tertiary structure. Biochemistry (1997) 1.11
Identity of tRNA for yeast tyrosyl-tRNA synthetase: tyrosylation is more sensitive to identity nucleotides than to structural features. Biochemistry (2000) 1.11
Large scale purification and structural properties of yeast aspartyl-tRNA synthetase. Biochem Biophys Res Commun (1983) 1.11
Interpretation of tRNA-mischarging kinetics. Eur J Biochem (1976) 1.11
Anticodon-anticodon interaction induces conformational changes in tRNA: yeast tRNAAsp, a model for tRNA-mRNA recognition. Proc Natl Acad Sci U S A (1986) 1.11
Effect of conformational features on the aminoacylation of tRNAs and consequences on the permutation of tRNA specificities. J Mol Biol (1992) 1.10
Influence of tRNA tertiary structure and stability on aminoacylation by yeast aspartyl-tRNA synthetase. Nucleic Acids Res (1993) 1.10
The contacts of yeast tRNA(Ser) with seryl-tRNA synthetase studied by footprinting experiments. Eur J Biochem (1990) 1.10
Arginine aminoacylation identity is context-dependent and ensured by alternate recognition sets in the anticodon loop of accepting tRNA transcripts. EMBO J (1996) 1.09
Identity elements of tRNA(Trp). Identification and evolutionary conservation. J Biol Chem (1993) 1.09
The free yeast aspartyl-tRNA synthetase differs from the tRNA(Asp)-complexed enzyme by structural changes in the catalytic site, hinge region, and anticodon-binding domain. J Mol Biol (2000) 1.08
Glycyl-tRNA synthetase from Thermus thermophilus--wide structural divergence with other prokaryotic glycyl-tRNA synthetases and functional inter-relation with prokaryotic and eukaryotic glycylation systems. Eur J Biochem (1998) 1.08
Experimental determination of water equilibration rates in the hanging drop method of protein crystallization. Anal Biochem (1990) 1.08
trans-Diamminedichloroplatinum(II), a reversible RNA-protein cross-linking agent. Application to the ribosome and to an aminoacyl-tRNA synthetase/tRNA complex. Biochemistry (1987) 1.07
Raman spectra and structure of yeast phenylalanine transfer RNA in the crystalline state and in solution. Biochemistry (1975) 1.07
Valylation of the two RNA components of turnip-yellow mosaic virus and specificity of the tRNA aminoacylation reaction. Eur J Biochem (1978) 1.06
Structure of phenylalanine-accepting transfer ribonucleic acid and of its environment in aqueous solvents with different salts. Biochemistry (1983) 1.05
Magnesium-dependent alternative foldings of active and inactive Escherichia coli tRNA(Glu) revealed by chemical probing. Nucleic Acids Res (1999) 1.05
Strategy for RNA recognition by yeast histidyl-tRNA synthetase. Bioorg Med Chem (1997) 1.04
Studies on anticodon-anticodon interactions: hemi-protonation of cytosines induces self-pairing through the GCC anticodon of E. coli tRNA-Gly. J Biomol Struct Dyn (1986) 1.03
Efficient mischarging of a viral tRNA-like structure and aminoacylation of a minihelix containing a pseudoknot: histidinylation of turnip yellow mosaic virus RNA. Nucleic Acids Res (1992) 1.03
Formylation of mischarged E. coli tRNA Met f . FEBS Lett (1973) 1.02
A histidine accepting tRNA-like fold at the 3'-end of satellite tobacco mosaic virus RNA. Nucleic Acids Res (1994) 1.02