Environment around the chromophore in pharaonis phoborhodopsin: mutation analysis of the retinal binding site.

PubWeight™: 1.02‹?› | Rank: Top 15%

🔗 View Article (PMID 11718665)

Published in Biochim Biophys Acta on December 01, 2001

Authors

K Shimono1, Y Ikeura, Y Sudo, M Iwamoto, N Kamo

Author Affiliations

1: Laboratory of Biophysical Chemistry, Graduate School of Pharmaceutical Sciences, Hokkaido University, 060-0812, Sapporo, Japan.

Articles citing this

Salinibacter sensory rhodopsin: sensory rhodopsin I-like protein from a eubacterium. J Biol Chem (2008) 0.93

A microbial rhodopsin with a unique retinal composition shows both sensory rhodopsin II and bacteriorhodopsin-like properties. J Biol Chem (2010) 0.91

A blue-shifted light-driven proton pump for neural silencing. J Biol Chem (2013) 0.89

FTIR spectroscopy of the M photointermediate in pharaonis rhoborhodopsin. Biophys J (2002) 0.87

Quantum mechanical/molecular mechanical studies on spectral tuning mechanisms of visual pigments and other photoactive proteins. Photochem Photobiol (2008) 0.86

Spectral tuning in sensory rhodopsin I from Salinibacter ruber. J Biol Chem (2011) 0.85

Tyr-199 and charged residues of pharaonis Phoborhodopsin are important for the interaction with its transducer. Biophys J (2002) 0.84

Atomistic design of microbial opsin-based blue-shifted optogenetics tools. Nat Commun (2015) 0.84

Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II). Biophys J (2002) 0.83

Thermal and spectroscopic characterization of a proton pumping rhodopsin from an extreme thermophile. J Biol Chem (2013) 0.82

A long-lived M-like state of phoborhodopsin that mimics the active state. Biophys J (2008) 0.81

The photochemical determinants of color vision: revealing how opsins tune their chromophore's absorption wavelength. Bioessays (2013) 0.81

Computational photochemistry of retinal proteins. J Comput Aided Mol Des (2006) 0.80

Probing the proton channel and the retinal binding site of Natronobacterium pharaonis sensory rhodopsin II. Biophys J (2002) 0.79

Photoreactions and structural changes of anabaena sensory rhodopsin. Sensors (Basel) (2009) 0.76

A unique choanoflagellate enzyme rhodopsin with cyclic nucleotide phosphodiesterase activity. J Biol Chem (2017) 0.75

Full-Quantum chemical calculation of the absorption maximum of bacteriorhodopsin: a comprehensive analysis of the amino acid residues contributing to the opsin shift. Biophysics (Nagoya-shi) (2012) 0.75

Molecular properties of a DTD channelrhodopsin from Guillardia theta. Biophys Physicobiol (2017) 0.75

Articles by these authors

Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res (1999) 13.02

Regulated expression of a gene encoding a nuclear factor, IRF-1, that specifically binds to IFN-beta gene regulatory elements. Cell (1988) 9.04

Membrane potential of mitochondria measured with an electrode sensitive to tetraphenyl phosphonium and relationship between proton electrochemical potential and phosphorylation potential in steady state. J Membr Biol (1979) 3.95

Pig cloning by microinjection of fetal fibroblast nuclei. Science (2000) 3.51

Expression of survivin and its relationship to loss of apoptosis in breast carcinomas. Clin Cancer Res (2000) 3.24

Evidence for a nuclear factor(s), IRF-1, mediating induction and silencing properties to human IFN-beta gene regulatory elements. EMBO J (1988) 3.11

Penetrating ocular fish-hook injuries. Surgical management and long-term visual outcome. Ophthalmology (1992) 2.96

Type II collagen-induced murine arthritis. I. Induction and perpetuation of arthritis require synergy between humoral and cell-mediated immunity. J Immunol (1988) 2.80

Skeletal malformations caused by overexpression of Cbfa1 or its dominant negative form in chondrocytes. J Cell Biol (2001) 2.73

Decreased prefrontal dopamine D1 receptors in schizophrenia revealed by PET. Nature (1997) 2.46

Cbfa1 is a positive regulatory factor in chondrocyte maturation. J Biol Chem (2000) 2.38

The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J (1999) 2.18

Correlation of serum IgG antibodies to recombinant P0 fusion protein with IgG antibodies to carboxyl-terminal 22 synthetic peptides and carboxyl-terminal 22 amino acid-deleted recombinant P0 fusion protein in patients with systemic lupus erythematosus. Arthritis Rheum (1997) 2.06

Induction of osteogenic differentiation by hedgehog proteins. Biochem Biophys Res Commun (1997) 2.05

A PVC-based electrode sensitive to DDA+ as a device for monitoring the membrane potential in biological systems. Arch Biochem Biophys (1978) 2.03

Decreased tyrosine phosphorylation of nephrin in rat and human nephrosis. Kidney Int (2008) 2.00

Imbalance towards Th1 predominance is associated with acceleration of lupus-like autoimmune syndrome in MRL mice. J Clin Invest (1996) 1.74

Quartz crystal microbalance for the detection of microgram quantities of human serum albumin: relationship between the frequency change and the mass of protein adsorbed. Anal Chem (1993) 1.73

PLACE: a database of plant cis-acting regulatory DNA elements. Nucleic Acids Res (1998) 1.60

Two photocycles in halobacterium halobium that lacks bacteriorhodopsin. Biochem Biophys Res Commun (1982) 1.59

B-cell lymphoma associated with haemophagocytic syndrome: a clinical, immunological and cytogenetic study. Br J Haematol (1999) 1.58

Perforating ocular fishhook injury. Arch Ophthalmol (1992) 1.54

Evidence that the long-lifetime photointermediate of s-rhodopsin is a receptor for negative phototaxis in Halobacterium halobium. Biochem Biophys Res Commun (1985) 1.52

Comparison of coronary hemodynamics in patients with internal mammary artery and saphenous vein coronary artery bypass grafts: a noninvasive approach using combined two-dimensional and Doppler echocardiography. J Am Coll Cardiol (1990) 1.52

The mitochondrial DNA of Dictyostelium discoideum: complete sequence, gene content and genome organization. Mol Gen Genet (2000) 1.50

Flash spectrophotometric identification of a fourth rhodopsin-like pigment in Halobacterium halobium. Biochem Biophys Res Commun (1986) 1.46

The effect of antimicrobial periodontal treatment on circulating tumor necrosis factor-alpha and glycated hemoglobin level in patients with type 2 diabetes. J Periodontol (2001) 1.45

Bone morphogenetic protein signaling is required for maintenance of differentiated phenotype, control of proliferation, and hypertrophy in chondrocytes. J Cell Biol (1998) 1.34

Fibroblasts expressing Sonic hedgehog induce osteoblast differentiation and ectopic bone formation. FEBS Lett (1997) 1.31

Interaction of theta-toxin (perfringolysin O), a cholesterol-binding cytolysin, with liposomal membranes: change in the aromatic side chains upon binding and insertion. Biochemistry (1995) 1.30

Precision top-quark mass measurement at CDF. Phys Rev Lett (2012) 1.30

Dopamine D2 receptors in the insular cortex and the personality trait of novelty seeking. Neuroimage (2001) 1.30

Terminal differentiation and calcification in rabbit chondrocyte cultures grown in centrifuge tubes: regulation by transforming growth factor beta and serum factors. Proc Natl Acad Sci U S A (1988) 1.29

Functional expression of pharaonis phoborhodopsin in Escherichia coli. FEBS Lett (1997) 1.22

Measurement of the cross section for prompt isolated diphoton production using the full CDF run II data sample. Phys Rev Lett (2013) 1.22

Photochemistry of two rhodopsinlike pigments in bacteriorhodopsin-free mutant of Halobacterium halobium. Biophys J (1983) 1.22

Pharmacokinetics of raltegravir in individuals with UGT1A1 polymorphisms. Clin Pharmacol Ther (2009) 1.21

Effect of the addition of fumarate on methane production by ruminal microorganisms in vitro. J Dairy Sci (1999) 1.21

Reduced volume of the cerebellar vermis in neuroleptic-naive schizophrenia. Biol Psychiatry (2001) 1.18

Matrix GLA protein is a developmental regulator of chondrocyte mineralization and, when constitutively expressed, blocks endochondral and intramembranous ossification in the limb. J Cell Biol (1999) 1.18

BMP signaling during bone pattern determination in the developing limb. Development (1996) 1.17

Pregnancy-associated listeriosis. Epidemiol Infect (2010) 1.15

Photo-induced proton transport of pharaonis phoborhodopsin (sensory rhodopsin II) is ceased by association with the transducer. Biophys J (2001) 1.15

Measurement of acetylcholinesterase by positron emission tomography in the brains of healthy controls and patients with Alzheimer's disease. Lancet (1997) 1.13

In archaebacteria, there is a doxorubicin efflux pump similar to mammalian P-glycoprotein. Biochim Biophys Acta (1992) 1.12

Tenascin is associated with articular cartilage development. Dev Dyn (1993) 1.11

Photocycle of phoborhodopsin from haloalkaliphilic bacterium (Natronobacterium pharaonis) studied by low-temperature spectrophotometry. Biochemistry (1992) 1.10

Decreased food intake and body weight in pancreatic polypeptide-overexpressing mice. Gastroenterology (1999) 1.10

Multistate outbreak of Escherichia coli O157:H7 infections associated with a national fast-food chain, 2006: a study incorporating epidemiological and food source traceback results. Epidemiol Infect (2010) 1.10

Presence and function of chondroitin-4-sulfate on recombinant human soluble thrombomodulin. Biochem Biophys Res Commun (1990) 1.08

Hedgehog proteins stimulate chondrogenic cell differentiation and cartilage formation. J Bone Miner Res (2000) 1.08

Evidence for a particle produced in association with weak bosons and decaying to a bottom-antibottom quark pair in higgs boson searches at the tevatron. Phys Rev Lett (2012) 1.08

High level expression and secretion of Fc-X fusion proteins in mammalian cells. Protein Eng (1998) 1.08

Age-related reduction of extrastriatal dopamine D2 receptor measured by PET. Life Sci (2001) 1.07

The contribution of residual renal function to overall nutritional status in chronic haemodialysis patients. Nephrol Dial Transplant (2000) 1.07

Negative phototaxis from blue light and the role of third rhodopsinlike pigment in halobacterium cutirubrum. Biophys J (1985) 1.06

Precise measurement of the W-boson mass with the CDF II detector. Phys Rev Lett (2012) 1.06

Measurement of membrane potential in polymorphonuclear leukocytes and its changes during surface stimulation. Biochim Biophys Acta (1982) 1.05

A case of inflammatory fibroid polyp causing small-bowel intussusception in which retrograde double-balloon enteroscopy was useful for the preoperative diagnosis. Endoscopy (2004) 1.04

Development of articular cartilage: what do we know about it and how may it occur? Connect Tissue Res (2000) 1.04

Polyclonal B cell activation arises from different mechanisms in lupus-prone (NZB x NZW)F1 and MRL/MpJ-lpr/lpr mice. J Immunol (1993) 1.04

Pysicochemical studies of taste reception. V. Suppressive effect of salts on sugar response of the frog. Biochim Biophys Acta (1976) 1.04

Effects of three characteristic amino acid residues of pharaonis phoborhodopsin on the absorption maximum. Photochem Photobiol (2000) 1.04

Tyrosine hydroxylase in bovine caudate nucleus. J Neurochem (1971) 1.04

Fibroblast growth factor is an inhibitor of chondrocyte terminal differentiation. J Biol Chem (1990) 1.03

Effect of salt on photocycle and ion-pumping of halorhodopsin and third rhodopsinlike pigment of Halobacterium halobium. Biophys J (1984) 1.03

The Yaa gene model of systemic lupus erythematosus. Immunol Rev (1995) 1.03

Involvement of alpha5beta1 integrin in matrix interactions and proliferation of chondrocytes. J Bone Miner Res (1997) 1.03

Characterization of the 4C8 antigen involved in transendothelial migration of CD26(hi) T cells after tight adhesion to human umbilical vein endothelial cell monolayers. J Exp Med (1999) 1.02

Plasminogen-plasmin system IX. Specific binding of tranexamic acid to plasmin. Thromb Diath Haemorrh (1975) 1.02

Protease-nicked theta-toxin of Clostridium perfringens, a new membrane probe with no cytolytic effect, reveals two classes of cholesterol as toxin-binding sites on sheep erythrocytes. Eur J Biochem (1988) 1.02

Mobilization of hematopoietic primitive and committed progenitor cells into blood in mice by anti-vascular adhesion molecule-1 antibody alone or in combination with granulocyte colony-stimulating factor. Exp Hematol (2000) 1.01

Cold-labile hemolysin produced by limited proteolysis of theta-toxin from Clostridium perfringens. Biochemistry (1986) 1.01

Plasminogen-plasmin system. V. A stoichiometric equilibrium complex of plasminogen and a synthetic inhibitor. Biochim Biophys Acta (1969) 1.01

Changes in parathyroid hormone receptors during chondrocyte cytodifferentiation. J Biol Chem (1994) 1.01

Activation of beta-catenin-LEF/TCF signal pathway in chondrocytes stimulates ectopic endochondral ossification. Osteoarthritis Cartilage (2003) 1.01

Retinoic acid treatment induces type X collagen gene expression in cultured chick chondrocytes. Exp Cell Res (1991) 1.00

Effects of interleukin-6 on proliferation and proteoglycan metabolism in articular chondrocyte cultures. Cell Biol Int (1998) 1.00

Photoinactivation of virus infectivity by hypocrellin A. Photochem Photobiol (1997) 1.00

Moyamoya disease associated with craniopharyngioma. Surg Neurol (1984) 1.00

Effects of hyaluronic acid on the release of proteoglycan from the cell matrix in rabbit chondrocyte cultures in the presence and absence of cytokines. Arthritis Rheum (1993) 1.00

Pharaonis phoborhodopsin binds to its cognate truncated transducer even in the presence of a detergent with a 1:1 stoichiometry. Photochem Photobiol (2001) 1.00

The Yaa gene-mediated acceleration of murine lupus: Yaa- T cells from non-autoimmune mice collaborate with Yaa+ B cells to produce lupus autoantibodies in vivo. Eur J Immunol (1995) 0.99

Stimulation of cartilage-matrix proteoglycan synthesis by morphologically transformed chondrocytes grown in the presence of fibroblast growth factor and transforming growth factor-beta. J Cell Physiol (1989) 0.99

Structure and transcriptional regulation of the gene encoding pyruvate formate-lyase of a ruminal bacterium, Streptococcus bovis. Microbiology (1999) 0.98

Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: infrared spectral comparison with bacteriorhodopsin. Biochemistry (2001) 0.98

Different cortical activity in reading of Kanji words, Kana words and Kana nonwords. Brain Res Cogn Brain Res (2000) 0.97

Suggestion of existence of two forms of halorhodospin in alkaline solution. Biochem Biophys Res Commun (1984) 0.97

A cytolysin, theta-toxin, preferentially binds to membrane cholesterol surrounded by phospholipids with 18-carbon hydrocarbon chains in cholesterol-rich region. J Biochem (1991) 0.97

Positioning proton-donating residues to the Schiff-base accelerates the M-decay of pharaonis phoborhodopsin expressed in Escherichia coli. Biophys Chem (1999) 0.97

[Usefulness of the preoperative MRI for diagnosis and operative method in a case of cor triatriatum]. Kyobu Geka (1996) 0.96

Wnt/beta-catenin signaling regulates cranial base development and growth. J Dent Res (2008) 0.96

Effects of continuous infusion of PTH on experimental tooth movement in rats. J Bone Miner Res (1999) 0.96

Angiotensin-converting enzyme (ACE) I/D genotype and renal ACE gene expression. Kidney Int (2001) 0.95