Published in Genome Biol on November 21, 2001
Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74
Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays. Genome Biol (2002) 5.04
Revisiting global gene expression analysis. Cell (2012) 3.63
Modeling of DNA microarray data by using physical properties of hybridization. Proc Natl Acad Sci U S A (2003) 2.95
Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis. Genome Biol (2002) 2.64
DNA microarray-based identification of genes associated with glycopeptide resistance in Staphylococcus aureus. Antimicrob Agents Chemother (2005) 2.28
Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells. J Mol Diagn (2006) 1.89
A gene expression fingerprint of C. elegans embryonic motor neurons. BMC Genomics (2005) 1.72
Evaluating different methods of microarray data normalization. BMC Bioinformatics (2006) 1.65
A model-based analysis of microarray experimental error and normalisation. Nucleic Acids Res (2003) 1.26
Long mRNAs coding for yeast mitochondrial proteins of prokaryotic origin preferentially localize to the vicinity of mitochondria. Genome Biol (2003) 1.24
Molecular profile of peripheral blood mononuclear cells from patients with rheumatoid arthritis. Mol Med (2007) 1.24
Transcriptional changes associated with breast cancer occur as normal human mammary epithelial cells overcome senescence barriers and become immortalized. Mol Cancer (2007) 1.24
"Per cell" normalization method for mRNA measurement by quantitative PCR and microarrays. BMC Genomics (2006) 1.18
A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors. Proteomics (2011) 1.14
Voluntary exploratory data submissions to the US FDA and the EMA: experience and impact. Nat Rev Drug Discov (2010) 1.08
Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays. BMC Bioinformatics (2004) 1.06
Human alveolar macrophage gene responses to Mycobacterium tuberculosis strains H37Ra and H37Rv. Am J Respir Cell Mol Biol (2008) 1.01
Removing intensity effects and identifying significant genes for Affymetrix arrays in macrophage migration inhibitory factor-suppressed neuroblastoma cells. Proc Natl Acad Sci U S A (2005) 1.01
Evaluation of normalization methods to pave the way towards large-scale LC-MS-based metabolomics profiling experiments. OMICS (2013) 0.91
Gene expression in rat supraspinatus tendon recovers from overuse with rest. Clin Orthop Relat Res (2008) 0.89
In vitro allergen challenge of peripheral blood induces differential gene expression in mononuclear cells of asthmatic patients: inhibition of cytosolic phospholipase A2alpha overcomes the asthma-associated response. Clin Exp Allergy (2008) 0.83
Transporter and ion channel gene expression after Caco-2 cell differentiation using 2 different microarray technologies. AAPS J (2004) 0.81
SED, a normalization free method for DNA microarray data analysis. BMC Bioinformatics (2004) 0.79
Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol (1996) 72.84
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A (2001) 68.44
Genome sequence of the nematode C. elegans: a platform for investigating biology. Science (1998) 61.48
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res (2002) 40.03
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci U S A (1999) 35.16
Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat Biotechnol (1997) 27.78
Dissecting the regulatory circuitry of a eukaryotic genome. Cell (1998) 23.62
A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell (1998) 19.67
Analyzing high-density oligonucleotide gene expression array data. J Cell Biochem (2000) 16.73
Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res (2001) 9.62
Genomic analysis of gene expression in C. elegans. Science (2000) 8.38
Gene expression profile of aging and its retardation by caloric restriction. Science (1999) 8.06
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array. Nat Biotechnol (2000) 6.36
Normalization and analysis of DNA microarray data by self-consistency and local regression. Genome Biol (2002) 5.13
Normalization strategies for cDNA microarrays. Nucleic Acids Res (2000) 4.61
Induction of GADD45 and JNK/SAPK-dependent apoptosis following inducible expression of BRCA1. Cell (1999) 2.92
Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis. Genomics (2000) 2.14
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science (1999) 83.27
Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol (1996) 72.84
An STS-based map of the human genome. Science (1995) 17.72
A gene map of the human genome. Science (1996) 14.32
A physical map of 30,000 human genes. Science (1998) 12.43
Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res (2001) 9.62
Human GM-CSF: molecular cloning of the complementary DNA and purification of the natural and recombinant proteins. Science (1985) 8.72
Genomic analysis of gene expression in C. elegans. Science (2000) 8.38
Chemosensitivity prediction by transcriptional profiling. Proc Natl Acad Sci U S A (2001) 7.51
High-pressure liquid chromatography in polynucleotide synthesis. Biochemistry (1978) 5.98
Transcriptional regulation of endothelial cell adhesion molecules: NF-kappa B and cytokine-inducible enhancers. FASEB J (1995) 5.59
Transcription profiling-based identification of Staphylococcus aureus genes regulated by the agr and/or sarA loci. J Bacteriol (2001) 5.57
Protein sorting in yeast: the localization determinant of yeast vacuolar carboxypeptidase Y resides in the propeptide. Cell (1987) 4.76
PEP4 gene of Saccharomyces cerevisiae encodes proteinase A, a vacuolar enzyme required for processing of vacuolar precursors. Mol Cell Biol (1986) 4.23
Functional analysis of the human vascular cell adhesion molecule 1 promoter. J Exp Med (1992) 3.03
The thermal stability of oligonucleotide duplexes is sequence independent in tetraalkylammonium salt solutions: application to identifying recombinant DNA clones. Nucleic Acids Res (1988) 2.95
Overproduction-induced mislocalization of a yeast vacuolar protein allows isolation of its structural gene. Proc Natl Acad Sci U S A (1986) 2.88
Decorin-binding adhesins from Borrelia burgdorferi. Mol Microbiol (1998) 2.85
Structure-assisted design of mechanism-based irreversible inhibitors of human rhinovirus 3C protease with potent antiviral activity against multiple rhinovirus serotypes. Proc Natl Acad Sci U S A (1999) 2.44
Determinants of black/white differences in colon cancer survival. J Natl Cancer Inst (1995) 2.36
Molecular characterization and expression of the gene encoding human erythroid-potentiating activity. Nature (1985) 2.25
Human T-cell growth factor: partial amino acid sequence, cDNA cloning, and organization and expression in normal and leukemic cells. Proc Natl Acad Sci U S A (1984) 2.12
NF-kappa B and I kappa B alpha: an inducible regulatory system in endothelial activation. J Exp Med (1994) 2.10
Tumor necrosis factor alpha-induced E-selectin expression is activated by the nuclear factor-kappaB and c-JUN N-terminal kinase/p38 mitogen-activated protein kinase pathways. J Biol Chem (1997) 1.99
Differences between black and white women with breast cancer in time from symptom recognition to medical consultation. Black/White Cancer Survival Study Group. J Natl Cancer Inst (1992) 1.77
Selection factors in clinical trials: results from the Community Clinical Oncology Program Physician's Patient Log. Cancer Treat Rep (1987) 1.76
Substituting an alpha-helix switches the sequence-specific DNA interactions of a repressor. Cell (1984) 1.63
Chemical synthesis and cloning of a tyrosine tRNA gene. Methods Enzymol (1979) 1.63
Immobilization of DNA via oligonucleotides containing an aldehyde or carboxylic acid group at the 5' terminus. Nucleic Acids Res (1987) 1.55
Structure-based design, synthesis, and biological evaluation of irreversible human rhinovirus 3C protease inhibitors. 4. Incorporation of P1 lactam moieties as L-glutamine replacements. J Med Chem (1999) 1.55
CDC-42 regulates PAR protein localization and function to control cellular and embryonic polarity in C. elegans. Curr Biol (2001) 1.49
A case of respiratory failure complicated by acute hypophosphataemia. Anaesthesia (1980) 1.36
Total synthesis of a tyrosine suppressor transfer RNA gene. XVI. Enzymatic joinings to form the total 207-base pair-long DNA. J Biol Chem (1979) 1.33
Release of early human hematopoietic progenitors from quiescence by antisense transforming growth factor beta 1 or Rb oligonucleotides. J Exp Med (1991) 1.27
Tripeptide aldehyde inhibitors of human rhinovirus 3C protease: design, synthesis, biological evaluation, and cocrystal structure solution of P1 glutamine isosteric replacements. J Med Chem (1998) 1.24
Histological characteristics of breast carcinoma in blacks and whites. Cancer Epidemiol Biomarkers Prev (1994) 1.22
A YAC-based physical map of the mouse genome. Nat Genet (1999) 1.22
Radiation hybrid map of the mouse genome. Nat Genet (1999) 1.21
New ways of initiating translation in eukaryotes. Mol Cell Biol (2001) 1.20
The maternal par genes and the segregation of cell fate specification activities in early Caenorhabditis elegans embryos. Development (1997) 1.19
Design, synthesis, and evaluation of nonpeptidic inhibitors of human rhinovirus 3C protease. J Med Chem (1996) 1.19
The t-unique coding domain is important to the transformation maintenance function of the simian virus 40 small t antigen. Mol Cell Biol (1986) 1.16
Structure-based design, synthesis, and biological evaluation of irreversible human rhinovirus 3C protease inhibitors. 1. Michael acceptor structure-activity studies. J Med Chem (1998) 1.14
Structure-based design, synthesis, and biological evaluation of irreversible human rhinovirus 3C protease inhibitors. 2. Peptide structure-activity studies. J Med Chem (1998) 1.12
Solution structure and peptide binding of the SH3 domain from human Fyn. Structure (1996) 1.08
A synthetic tyrosine suppressor tRNA gene with an altered promoter sequence. Its cloning and relative expression in vivo. J Biol Chem (1979) 1.08
Release from quiescence of CD34+ CD38- human umbilical cord blood cells reveals their potentiality to engraft adults. Proc Natl Acad Sci U S A (1993) 1.07
The synthesis and cloning of two tyrosine suppressor tRNA genes with altered promoter sequences. J Biol Chem (1981) 1.06
Treatment plans for black and white women with stage II node-positive breast cancer. The National Cancer Institute Black/White Cancer Survival Study experience. Cancer (1992) 1.06
Transcriptional profiling of human osteoblast differentiation. J Cell Biochem (2003) 1.04
The dance of the Hox genes: patterning the anteroposterior body axis of Caenorhabditis elegans. Cold Spring Harb Symp Quant Biol (1997) 0.95
Approaches to the release of a master cell bank of PER.C6 cells; a novel cell substrate for the manufacture of human vaccines. Dev Biol (Basel) (2006) 0.93
Total synthesis of a tyrosine suppressor tRNA gene. XVIII. Biological activity and transcription, in vitro, of the cloned gene. J Biol Chem (1979) 0.93
Constitutive production of macrophage colony-stimulating factor by human ovarian and breast cancer cell lines. J Clin Invest (1989) 0.92
Inflight measurement of pilot workload: a panel discussion. Aviat Space Environ Med (1978) 0.91
Psycho-maintenance in asthma: hospitalization rates and financial impact. Br J Med Psychol (1980) 0.88
Autonomy and nonautonomy of sex determination in triploid intersex mosaics of C. elegans. Development (1991) 0.86
High throughput interaction data reveals degree conservation of hub proteins. Pac Symp Biocomput (2009) 0.86
Specific Th1 cell lines that confer protective immunity against experimental Borrelia burgdorferi infection in mice. J Leukoc Biol (1998) 0.85
Epidemiological approach to Parkinson's disease. Lancet (1972) 0.85
Selective and opposing actions of progesterone receptor isoforms in human endometrial stromal cells. Mol Cell Endocrinol (2006) 0.85
The nurse must know... the nurse must speak. Nurs Forum (1966) 0.84
Anatomic site distribution of colon cancer by race and other colon cancer risk factors. Dis Colon Rectum (1995) 0.84
Increased T lymphocytes and IgMEA-receptor lymphocytes in Hodgkin's disease spleens. Cell Immunol (1977) 0.84
Structure-based design of ketone-containing, tripeptidyl human rhinovirus 3C protease inhibitors. Bioorg Med Chem Lett (2000) 0.84
Evaluating between-pathway models with expression data. J Comput Biol (2010) 0.83
The relation between gap discrimination and auditory stream segregation. Percept Psychophys (1982) 0.83
The epidemiology of Parkinson's disease. Proc R Soc Med (1973) 0.82
Genome maps 7. The human transcript map. Wall chart. Science (1996) 0.82
Histoplasmosis. Can Med Assoc J (1956) 0.81
Alexithymic asthmatics: the miscommunication of affective and somatic states. Psychother Psychosom (1981) 0.81
Effects of patient management guidelines on physician practice patterns: the Community Hospital Oncology Program experience. J Clin Oncol (1987) 0.80
Total synthesis of a tyrosine suppressor transfer RNA gene. XIV. Chemical synthesis of oligonucleotide segments corresponding to the terminal regions. J Biol Chem (1979) 0.80
On the location and function of the noncatalytic sites on the bovine heart mitochondrial F1-ATPase. J Biol Chem (1988) 0.80
Topical lignocaine in poor-risk cases. Br J Anaesth (1978) 0.80
HeteroTOCSY-based experiments for measuring heteronuclear relaxation in nucleic acids and proteins. J Biomol NMR (1995) 0.79
Suppression of antigen-specific lymphocyte activation in modeled microgravity. In Vitro Cell Dev Biol Anim (2001) 0.79
Isolation of cDNAs encoding human and gibbon GM-CSF. Prog Clin Biol Res (1985) 0.78
A common theme in endothelial activation Insights from the structural analysis of the genes for E-selectin and VCAM-1. Trends Cardiovasc Med (2011) 0.77
Memory for faces: testing method, encoding strategy, and confidence. Am J Psychol (1981) 0.77
Oligonucleotide arrays for expression monitoring. Curr Protoc Hum Genet (2001) 0.77
Effect of local ultraviolet irradiation on infections of mice with Candida albicans, Mycobacterium bovis BCG, and Schistosoma mansoni. J Invest Dermatol (1992) 0.77
Substituted benzamide inhibitors of human rhinovirus 3C protease: structure-based design, synthesis, and biological evaluation. J Med Chem (2000) 0.76
Additive effects of steel factor and antisense TGF-beta 1 oligodeoxynucleotide on CD34+ hematopoietic progenitor cells. Leukemia (1994) 0.76
Short-term retention of auditory sequences as a function of stimulus duration, interstimulus interval, and encoding technique. J Exp Psychol (1972) 0.76
Severe hypophosphataemia during recovery from acute respiratory acidosis. Br Med J (Clin Res Ed) (1984) 0.75
Primary care physicians attitude toward diagnosis and treatment of late-life depression. CNS Spectr (2002) 0.75
Interaction of a novel GDP exchange inhibitor with the Ras protein. Biochemistry (1998) 0.75
The battery of asthma illness behavior, II: independence from airways hyperreactivity. J Asthma (1982) 0.75
User satisfaction with permanent post-disaster housing: two years after hurricane fifi in honduras. Disasters (1980) 0.75
Attrition and housing improvements: A study of post-disaster housing after three years. Disasters (1982) 0.75
Collaboration braces schools against eroding resources. Nurs Health Care (1985) 0.75
pH shifts and precipitation associated with metal ions in tissue culture. Biomaterials (1985) 0.75
Comparing and analyzing expenditure factors in nursing education. NLN Publ (1982) 0.75