Published in EMBO Rep on March 01, 2002
Beta-catenin hits chromatin: regulation of Wnt target gene activation. Nat Rev Mol Cell Biol (2009) 3.67
Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4. Proc Natl Acad Sci U S A (2004) 2.80
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell (2005) 2.76
Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome. Nucleic Acids Res (2006) 2.67
Histone deacetylation inhibition in pulmonary hypertension: therapeutic potential of valproic acid and suberoylanilide hydroxamic acid. Circulation (2012) 2.54
Mechanism of chemoresistance mediated by miR-140 in human osteosarcoma and colon cancer cells. Oncogene (2009) 2.49
Regulation of peroxisome proliferator-activated receptor gamma coactivator 1 alpha (PGC-1 alpha ) and mitochondrial function by MEF2 and HDAC5. Proc Natl Acad Sci U S A (2003) 2.48
The Saccharomyces cerevisiae histone H2A variant Htz1 is acetylated by NuA4. Genes Dev (2006) 2.42
Next-generation systemic acquired resistance. Plant Physiol (2011) 2.40
A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock. Plant Cell (2007) 2.37
Histone modifications affect timing of oligodendrocyte progenitor differentiation in the developing rat brain. J Cell Biol (2005) 2.34
The TRPM7 chanzyme is cleaved to release a chromatin-modifying kinase. Cell (2014) 2.22
Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response. EMBO Rep (2010) 1.92
Circadian and light-induced transcription of clock gene Per1 depends on histone acetylation and deacetylation. Mol Cell Biol (2004) 1.89
Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density. Mol Cell Biol (2005) 1.89
Critical loss of CBP/p300 histone acetylase activity by caspase-6 during neurodegeneration. EMBO J (2003) 1.80
Sustained activation of XBP1 splicing leads to endothelial apoptosis and atherosclerosis development in response to disturbed flow. Proc Natl Acad Sci U S A (2009) 1.74
Significant improvement in cloning efficiency of an inbred miniature pig by histone deacetylase inhibitor treatment after somatic cell nuclear transfer. Biol Reprod (2009) 1.74
Divergent roles of a pair of homologous jumonji/zinc-finger-class transcription factor proteins in the regulation of Arabidopsis flowering time. Plant Cell (2004) 1.69
Structural studies of human histone deacetylase 8 and its site-specific variants complexed with substrate and inhibitors. Biochemistry (2008) 1.68
The tor pathway regulates gene expression by linking nutrient sensing to histone acetylation. Mol Cell Biol (2003) 1.66
Cell shape regulates global histone acetylation in human mammary epithelial cells. Exp Cell Res (2007) 1.64
Methylation of histone H3 mediates the association of the NuA3 histone acetyltransferase with chromatin. Mol Cell Biol (2006) 1.58
E2f1, E2f2, and E2f3 control E2F target expression and cellular proliferation via a p53-dependent negative feedback loop. Mol Cell Biol (2007) 1.55
Chromatin fiber functional organization: some plausible models. Eur Phys J E Soft Matter (2006) 1.51
Hematopoietic-specific activators establish an overlapping pattern of histone acetylation and methylation within a mammalian chromatin domain. Proc Natl Acad Sci U S A (2002) 1.51
Cleavage and cytoplasmic relocalization of histone deacetylase 3 are important for apoptosis progression. Mol Cell Biol (2006) 1.46
Epigenetic mechanisms of facioscapulohumeral muscular dystrophy. Mutat Res (2008) 1.45
Yaf9, a novel NuA4 histone acetyltransferase subunit, is required for the cellular response to spindle stress in yeast. Mol Cell Biol (2003) 1.44
Two different Drosophila ADA2 homologues are present in distinct GCN5 histone acetyltransferase-containing complexes. Mol Cell Biol (2003) 1.42
Lsh, an epigenetic guardian of repetitive elements. Nucleic Acids Res (2004) 1.40
Epigenetic regulation of immune cell functions during post-septic immunosuppression. Epigenetics (2011) 1.38
Lysine acetylation is a widespread protein modification for diverse proteins in Arabidopsis. Plant Physiol (2011) 1.36
Structures of protein domains that create or recognize histone modifications. EMBO Rep (2004) 1.31
A histone code in meiosis: the histone kinase, NHK-1, is required for proper chromosomal architecture in Drosophila oocytes. Genes Dev (2005) 1.30
Dynamic acetylation of all lysine-4 trimethylated histone H3 is evolutionarily conserved and mediated by p300/CBP. Proc Natl Acad Sci U S A (2011) 1.30
Reprogramming of pancreatic exocrine cells towards a beta (β) cell character using Pdx1, Ngn3 and MafA. Biochem J (2012) 1.23
Chromatin dynamics and the evolution of alternate promoter states. Chromosome Res (2006) 1.19
Histone deacetylase inhibitors improve in vitro and in vivo developmental competence of somatic cell nuclear transfer porcine embryos. Cell Reprogram (2010) 1.19
Histone H4 lysine 16 acetylation breaks the genome's silence. Genome Biol (2006) 1.16
Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize. Plant Cell (2008) 1.16
Hepatitis C virus inhibits DNA damage repair through reactive oxygen and nitrogen species and by interfering with the ATM-NBS1/Mre11/Rad50 DNA repair pathway in monocytes and hepatocytes. J Immunol (2010) 1.16
Alcohol-induced protein hyperacetylation: mechanisms and consequences. World J Gastroenterol (2009) 1.15
Developmentally regulated recruitment of transcription factors and chromatin modification activities to chicken lysozyme cis-regulatory elements in vivo. Mol Cell Biol (2003) 1.15
Hypoxia-induced and stress-specific changes in chromatin structure and function. Mutat Res (2007) 1.15
Epigenetic consequences of AML1-ETO action at the human c-FMS locus. EMBO J (2003) 1.14
APE1/Ref-1 regulates PTEN expression mediated by Egr-1. Free Radic Res (2008) 1.13
The transcriptional enhancer of the pea plastocyanin gene associates with the nuclear matrix and regulates gene expression through histone acetylation. Plant Cell (2003) 1.12
Diet-induced lethality due to deletion of the Hdac3 gene in heart and skeletal muscle. J Biol Chem (2011) 1.10
Evolution of the arginase fold and functional diversity. Cell Mol Life Sci (2008) 1.09
p300 Acetyltransferase activity differentially regulates the localization and activity of the FOXO homologues in skeletal muscle. Am J Physiol Cell Physiol (2011) 1.07
PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings. Plant Cell (2013) 1.06
Association of reading disabilities with regions marked by acetylated H3 histones in KIAA0319. Am J Med Genet B Neuropsychiatr Genet (2010) 1.05
Temporal orchestration of repressive chromatin modifiers by circadian clock Period complexes. Nat Struct Mol Biol (2014) 1.05
KLF15 negatively regulates estrogen-induced epithelial cell proliferation by inhibition of DNA replication licensing. Proc Natl Acad Sci U S A (2012) 1.04
Differential lysine acetylation profiles of Erwinia amylovora strains revealed by proteomics. J Proteomics (2012) 1.03
Plant response to stress meets dedifferentiation. Planta (2011) 1.02
Brn3a target gene recognition in embryonic sensory neurons. Dev Biol (2006) 1.02
Chromatin structure exhibits spatio-temporal heterogeneity within the cell nucleus. Biophys J (2006) 1.02
Intra- and inter-nucleosome interactions of the core histone tail domains in higher-order chromatin structure. Chromosoma (2013) 1.02
Patterns of genome-wide VDR locations. PLoS One (2014) 1.01
Regulation of acetylation at the major histocompatibility complex class II proximal promoter by the 19S proteasomal ATPase Sug1. Mol Cell Biol (2008) 1.00
Histone deacetylase activity is necessary for left-right patterning during vertebrate development. BMC Dev Biol (2011) 1.00
Differential transcription factor occupancy but evolutionarily conserved chromatin features at the human and mouse M-CSF (CSF-1) receptor loci. Nucleic Acids Res (2003) 0.97
The CBP bromodomain and nucleosome targeting are required for Zta-directed nucleosome acetylation and transcription activation. Mol Cell Biol (2003) 0.96
Acetylation regulates WRN catalytic activities and affects base excision DNA repair. PLoS One (2008) 0.96
Ultrasensitive gene regulation by positive feedback loops in nucleosome modification. Mol Syst Biol (2008) 0.96
Trichostatin A and 5-azacytidine both cause an increase in global histone H4 acetylation and a decrease in global DNA and H3K9 methylation during mitosis in maize. BMC Plant Biol (2010) 0.96
Maize lines expressing RNAi to chromatin remodeling factors are similarly hypersensitive to UV-B radiation but exhibit distinct transcriptome responses. Epigenetics (2008) 0.95
Alcohol-induced alterations in hepatic microtubule dynamics can be explained by impaired histone deacetylase 6 function. Hepatology (2008) 0.95
Acetylation-dependent oncogenic activity of metastasis-associated protein 1 co-regulator. EMBO Rep (2010) 0.95
Epigenetic regulation of polymerase II transcription initiation in Trypanosoma cruzi: modulation of nucleosome abundance, histone modification, and polymerase occupancy by O-linked thymine DNA glucosylation. Eukaryot Cell (2011) 0.95
Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA. Plant Physiol (2011) 0.95
Two tales of antioxidant enzymes on β cells and diabetes. Antioxid Redox Signal (2010) 0.95
A functional analysis reveals dependence on the anaphase-promoting complex for prolonged life span in yeast. Genetics (2004) 0.94
Functional O-GlcNAc modifications: implications in molecular regulation and pathophysiology. Crit Rev Biochem Mol Biol (2014) 0.94
Contributions of extracellular matrix signaling and tissue architecture to nuclear mechanisms and spatial organization of gene expression control. Biochim Biophys Acta (2009) 0.93
Predicting glioblastoma prognosis networks using weighted gene co-expression network analysis on TCGA data. BMC Bioinformatics (2012) 0.93
Epigenetic regulation of inflammatory cytokines and associated genes in human malignancies. Mediators Inflamm (2015) 0.93
Epigenetic control of the immune escape mechanisms in malignant carcinomas. Mol Cell Biol (2007) 0.92
Brn3a regulates neuronal subtype specification in the trigeminal ganglion by promoting Runx expression during sensory differentiation. Neural Dev (2010) 0.92
In vivo haematopoietic activity is induced in neurosphere cells by chromatin-modifying agents. EMBO J (2005) 0.92
Lessons from genome-wide studies: an integrated definition of the coactivator function of histone acetyl transferases. Epigenetics Chromatin (2010) 0.92
A synthetic lethal screen identifies the Vitamin D receptor as a novel gemcitabine sensitizer in pancreatic cancer cells. Cell Cycle (2014) 0.92
Methylation-dependent activation of CDX1 through NF-κB: a link from inflammation to intestinal metaplasia in the human stomach. Am J Pathol (2012) 0.91
The role of cadmium and nickel in estrogen receptor signaling and breast cancer: metalloestrogens or not? J Environ Sci Health C Environ Carcinog Ecotoxicol Rev (2012) 0.91
Histone acetyltransferase PCAF up-regulated cell apoptosis in hepatocellular carcinoma via acetylating histone H4 and inactivating AKT signaling. Mol Cancer (2013) 0.91
Dietary, metabolic, and potentially environmental modulation of the lysine acetylation machinery. Int J Cell Biol (2010) 0.90
Auxin-regulated chromatin switch directs acquisition of flower primordium founder fate. Elife (2015) 0.90
Structure and mechanism of non-histone protein acetyltransferase enzymes. FEBS J (2013) 0.90
Primary 1,25-dihydroxyvitamin D3 response of the interleukin 8 gene cluster in human monocyte- and macrophage-like cells. PLoS One (2013) 0.89
Dual roles of histone H3 lysine 9 acetylation in human embryonic stem cell pluripotency and neural differentiation. J Biol Chem (2014) 0.89
NFκB mediates cisplatin resistance through histone modifications in head and neck squamous cell carcinoma (HNSCC). FEBS Open Bio (2013) 0.89
Chromatin acetylation at transcription start sites and vitamin D receptor binding regions relates to effects of 1α,25-dihydroxyvitamin D3 and histone deacetylase inhibitors on gene expression. Nucleic Acids Res (2012) 0.89
Alpha-adrenergic signalling activates protein kinase D and causes nuclear efflux of the transcriptional repressor HDAC5 in cultured adult mouse soleus skeletal muscle fibres. J Physiol (2009) 0.89
HDAC activity is required during Xenopus tail regeneration. PLoS One (2011) 0.89
The stem cell state in plant development and in response to stress. Front Plant Sci (2011) 0.88
HDAC2 phosphorylation-dependent Klf5 deacetylation and RARα acetylation induced by RAR agonist switch the transcription regulatory programs of p21 in VSMCs. Cell Res (2011) 0.88
Decoding the non-coding genome: elucidating genetic risk outside the coding genome. Genes Brain Behav (2016) 0.88
Translating the histone code. Science (2001) 56.77
The language of covalent histone modifications. Nature (2000) 44.92
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Histone acetylation and an epigenetic code. Bioessays (2000) 8.84
Structure and function of a human TAFII250 double bromodomain module. Science (2000) 8.00
Acetylation: a regulatory modification to rival phosphorylation? EMBO J (2000) 7.35
Binding of c-Myc to chromatin mediates mitogen-induced acetylation of histone H4 and gene activation. Genes Dev (2001) 6.36
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Signaling to chromatin through histone modifications. Cell (2000) 5.36
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Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci. EMBO J (2001) 4.28
Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III. Mol Cell Biol (1998) 4.26
Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin. Mol Cell (2001) 4.06
Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila. Mol Cell (2000) 3.98
The essential cofactor TRRAP recruits the histone acetyltransferase hGCN5 to c-Myc. Mol Cell Biol (2000) 3.86
Histone methylation versus histone acetylation: new insights into epigenetic regulation. Curr Opin Cell Biol (2001) 3.86
A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme. Mol Cell (1999) 3.80
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SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes Dev (2001) 3.23
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Regulation of cyclin D2 gene expression by the Myc/Max/Mad network: Myc-dependent TRRAP recruitment and histone acetylation at the cyclin D2 promoter. Genes Dev (2001) 3.15
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Histone acetylation beyond promoters: long-range acetylation patterns in the chromatin world. Bioessays (2001) 1.88
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Dosage compensation: the beginning and end of generalization. Nat Rev Genet (2007) 2.84
Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. Genes Dev (2006) 2.73
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A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI. Nucleic Acids Res (2002) 1.95
Functional integration of the histone acetyltransferase MOF into the dosage compensation complex. EMBO J (2004) 1.93
The Drosophila MSL complex activates the transcription of target genes. Genes Dev (2005) 1.93
The dMi-2 chromodomains are DNA binding modules important for ATP-dependent nucleosome mobilization. EMBO J (2002) 1.91
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Active promoters and insulators are marked by the centrosomal protein 190. EMBO J (2009) 1.82
ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins. Mol Cell (2013) 1.81
Nucleosome remodeling: one mechanism, many phenomena? Biochim Biophys Acta (2004) 1.69
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Sequence-specific targeting of Drosophila roX genes by the MSL dosage compensation complex. Mol Cell (2003) 1.66
Combined use of RNAi and quantitative proteomics to study gene function in Drosophila. Mol Cell (2008) 1.64
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The activation potential of MOF is constrained for dosage compensation. Mol Cell (2010) 1.27
Ran binds to chromatin by two distinct mechanisms. Curr Biol (2002) 1.27
Global analysis of the relationship between JIL-1 kinase and transcription. PLoS Genet (2011) 1.24
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The MRG domain mediates the functional integration of MSL3 into the dosage compensation complex. Mol Cell Biol (2005) 1.18
Cumulative contributions of weak DNA determinants to targeting the Drosophila dosage compensation complex. Nucleic Acids Res (2007) 1.17
Drosophila ISWI regulates the association of histone H1 with interphase chromosomes in vivo. Genetics (2009) 1.16
Recruitment of the nucleolar remodeling complex NoRC establishes ribosomal DNA silencing in chromatin. Mol Cell Biol (2004) 1.15
Probing the conformation of the ISWI ATPase domain with genetically encoded photoreactive crosslinkers and mass spectrometry. Mol Cell Proteomics (2011) 1.14
The dosage compensation complex shapes the conformation of the X chromosome in Drosophila. Genes Dev (2009) 1.14
The ATPase domain of ISWI is an autonomous nucleosome remodeling machine. Nat Struct Mol Biol (2012) 1.13
The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset. Nucleic Acids Res (2011) 1.13
The histone fold subunits of Drosophila CHRAC facilitate nucleosome sliding through dynamic DNA interactions. Mol Cell Biol (2005) 1.10
Gene regulation: a finger on the mark. Nature (2006) 1.10
Comment on "Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters". Science (2013) 1.08
Nucleosome sliding mechanisms: new twists in a looped history. Nat Struct Mol Biol (2013) 1.07
Stable chromosomal association of MSL2 defines a dosage-compensated nuclear compartment. Chromosoma (2005) 1.06
Dosage compensation and the global re-balancing of aneuploid genomes. Genome Biol (2010) 1.03
Dosage compensation in flies: mechanism, models, mystery. FEBS Lett (2005) 1.03
The DNA binding CXC domain of MSL2 is required for faithful targeting the Dosage Compensation Complex to the X chromosome. Nucleic Acids Res (2010) 1.02
Site-specific acetylation of ISWI by GCN5. BMC Mol Biol (2007) 1.02
Structure-function analysis of the RNA helicase maleless. Nucleic Acids Res (2007) 0.99
Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq. Genome Res (2012) 0.98
Role for hACF1 in the G2/M damage checkpoint. Nucleic Acids Res (2011) 0.97
Phosphorylation of SU(VAR)3-9 by the chromosomal kinase JIL-1. PLoS One (2010) 0.97
Transcription modulation chromosome-wide: universal features and principles of dosage compensation in worms and flies. Curr Opin Genet Dev (2011) 0.96
ACF catalyses chromatosome movements in chromatin fibres. EMBO J (2007) 0.95
DNA sequence and the organization of chromosomal domains. Curr Opin Genet Dev (2008) 0.94
MSL2 combines sensor and effector functions in homeostatic control of the Drosophila dosage compensation machinery. Mol Cell (2012) 0.93
A nucleosome sliding assay for chromatin remodeling factors. Methods Enzymol (2004) 0.91
Nucleosome remodelers on track. Nat Struct Mol Biol (2005) 0.91
ATP-dependent chromatosome remodeling. Biol Chem (2008) 0.90
Nucleosome dynamics and epigenetic stability. Essays Biochem (2010) 0.88
Gene regulation by histone H1: new links to DNA methylation. Cell (2005) 0.88
Acetylation increases access of remodelling complexes to their nucleosome targets to enhance initiation of V(D)J recombination. Nucleic Acids Res (2007) 0.87
Developmental role for ACF1-containing nucleosome remodellers in chromatin organisation. Development (2010) 0.87
The variant histone H2A.V of Drosophila--three roles, two guises. Chromosoma (2013) 0.86
Nucleosome remodeler SNF2L suppresses cell proliferation and migration and attenuates Wnt signaling. Mol Cell Biol (2012) 0.83
Form and function of dosage-compensated chromosomes--a chicken-and-egg relationship. Bioessays (2010) 0.82
Roles of long, non-coding RNA in chromosome-wide transcription regulation: lessons from two dosage compensation systems. Biochimie (2012) 0.80
Preparation of chromatin assembly extracts from preblastoderm Drosophila embryos. Methods Mol Biol (2009) 0.77
Analysis of activator-dependent transcription reinitiation in vitro. Methods Enzymol (2003) 0.76
Computational study of remodeling in a nucleosomal array. Eur Phys J E Soft Matter (2015) 0.75
Determination of unknown genomic sequences without cloning. Methods Mol Biol (2003) 0.75
Analysis of reconstituted chromatin using a solid-phase approach. Methods Mol Biol (2009) 0.75
Beads-on-a-string on a bead: reconstitution and analysis of chromatin on a solid support. Methods Mol Biol (2015) 0.75
A defined in vitro system to study ATP-dependent remodeling of short chromatin fibers. Methods Mol Biol (2012) 0.75