Published in Plant Physiol on June 01, 2002
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res (2003) 18.69
Efficient control of population structure in model organism association mapping. Genetics (2008) 12.32
SNP discovery via 454 transcriptome sequencing. Plant J (2007) 5.92
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol (2006) 4.33
A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet (2009) 3.97
A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics (2007) 3.54
Arabidopsis PEN3/PDR8, an ATP binding cassette transporter, contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration. Plant Cell (2006) 3.20
Cytosolic HSP90 associates with and modulates the Arabidopsis RPM1 disease resistance protein. EMBO J (2003) 2.67
The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development. Plant Cell (2006) 2.62
An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome Res (2004) 2.56
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell (2007) 2.55
AtALMT1, which encodes a malate transporter, is identified as one of several genes critical for aluminum tolerance in Arabidopsis. Proc Natl Acad Sci U S A (2006) 2.33
Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana. Genome Res (2003) 2.32
Analyses of expressed sequence tags from apple. Plant Physiol (2006) 2.32
The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. Plant Cell (2003) 2.14
Analysis of natural allelic variation of Arabidopsis seed germination and seed longevity traits between the accessions Landsberg erecta and Shakdara, using a new recombinant inbred line population. Plant Physiol (2004) 2.10
Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiol (2005) 2.07
A putative nucleoporin 96 Is required for both basal defense and constitutive resistance responses mediated by suppressor of npr1-1,constitutive 1. Plant Cell (2005) 2.06
Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is controlled by a mitochondrial molybdenum transporter (MOT1). PLoS Genet (2008) 1.99
Development of genome-wide DNA polymorphism database for map-based cloning of rice genes. Plant Physiol (2004) 1.98
Evidence for a direct link between glutathione biosynthesis and stress defense gene expression in Arabidopsis. Plant Cell (2004) 1.97
SUGAR-DEPENDENT1 encodes a patatin domain triacylglycerol lipase that initiates storage oil breakdown in germinating Arabidopsis seeds. Plant Cell (2006) 1.96
Nuclear pore complex component MOS7/Nup88 is required for innate immunity and nuclear accumulation of defense regulators in Arabidopsis. Plant Cell (2009) 1.96
Arabidopsis SGT1b is required for SCF(TIR1)-mediated auxin response. Plant Cell (2003) 1.96
REVERSION-TO-ETHYLENE SENSITIVITY1, a conserved gene that regulates ethylene receptor function in Arabidopsis. Proc Natl Acad Sci U S A (2006) 1.93
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication. Proc Natl Acad Sci U S A (2006) 1.87
High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology. BMC Genomics (2007) 1.86
Comparative analyses of potato expressed sequence tag libraries. Plant Physiol (2003) 1.84
ARC5, a cytosolic dynamin-like protein from plants, is part of the chloroplast division machinery. Proc Natl Acad Sci U S A (2003) 1.83
Majority of divergence between closely related DNA samples is due to indels. Proc Natl Acad Sci U S A (2003) 1.82
Substoichiometric shifting in the plant mitochondrial genome is influenced by a gene homologous to MutS. Proc Natl Acad Sci U S A (2003) 1.82
GIGANTEA acts in blue light signaling and has biochemically separable roles in circadian clock and flowering time regulation. Plant Physiol (2006) 1.74
miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.73
MUCILAGE-MODIFIED4 encodes a putative pectin biosynthetic enzyme developmentally regulated by APETALA2, TRANSPARENT TESTA GLABRA1, and GLABRA2 in the Arabidopsis seed coat. Plant Physiol (2003) 1.70
Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots". Genome Res (2005) 1.70
Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock. Genetics (2005) 1.67
Validation of the high-throughput marker technology DArT using the model plant Arabidopsis thaliana. Mol Genet Genomics (2005) 1.62
Plastid signals remodel light signaling networks and are essential for efficient chloroplast biogenesis in Arabidopsis. Plant Cell (2007) 1.60
The missing step of the L-galactose pathway of ascorbate biosynthesis in plants, an L-galactose guanyltransferase, increases leaf ascorbate content. Proc Natl Acad Sci U S A (2007) 1.59
Characterization of tocopherol cyclases from higher plants and cyanobacteria. Evolutionary implications for tocopherol synthesis and function. Plant Physiol (2003) 1.58
Arabidopsis ETA2, an apparent ortholog of the human cullin-interacting protein CAND1, is required for auxin responses mediated by the SCF(TIR1) ubiquitin ligase. Plant Cell (2004) 1.58
The impact of genomics on the study of natural variation in Arabidopsis. Plant Physiol (2003) 1.56
The Arabidopsis MUM2 gene encodes a beta-galactosidase required for the production of seed coat mucilage with correct hydration properties. Plant Cell (2007) 1.53
Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes. PLoS Genet (2011) 1.48
Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses. Plant Cell (2004) 1.48
SNP Discovery through Next-Generation Sequencing and Its Applications. Int J Plant Genomics (2012) 1.46
The Arabidopsis thaliana REDUCED EPIDERMAL FLUORESCENCE1 gene encodes an aldehyde dehydrogenase involved in ferulic acid and sinapic acid biosynthesis. Plant Cell (2004) 1.44
PlantMarkers--a database of predicted molecular markers from plants. Nucleic Acids Res (2005) 1.44
CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. Plant Cell (2005) 1.43
The arabidopsis DNA polymerase δ has a role in the deposition of transcriptionally active epigenetic marks, development and flowering. PLoS Genet (2015) 1.42
Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs. BMC Genomics (2006) 1.41
Ascorbate-deficient mutants of Arabidopsis grow in high light despite chronic photooxidative stress. Plant Physiol (2004) 1.41
High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing. BMC Genomics (2012) 1.41
Interactions between MUR10/CesA7-dependent secondary cellulose biosynthesis and primary cell wall structure. Plant Physiol (2006) 1.40
Plant disease susceptibility conferred by a "resistance" gene. Proc Natl Acad Sci U S A (2007) 1.40
Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait. Plant Physiol (2003) 1.39
LACHESIS restricts gametic cell fate in the female gametophyte of Arabidopsis. PLoS Biol (2007) 1.38
SCARFACE encodes an ARF-GAP that is required for normal auxin efflux and vein patterning in Arabidopsis. Plant Cell (2006) 1.37
Genomic analysis of QTLs and genes altering natural variation in stochastic noise. PLoS Genet (2011) 1.36
APETALA2 regulates the stem cell niche in the Arabidopsis shoot meristem. Plant Cell (2005) 1.35
Engineering vitamin E content: from Arabidopsis mutant to soy oil. Plant Cell (2003) 1.34
Identification of a novel chloroplast protein AtNYE1 regulating chlorophyll degradation during leaf senescence in Arabidopsis. Plant Physiol (2007) 1.34
The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis. Plant Cell (2012) 1.33
Arabidopsis VTC2 encodes a GDP-L-galactose phosphorylase, the last unknown enzyme in the Smirnoff-Wheeler pathway to ascorbic acid in plants. J Biol Chem (2007) 1.33
An Arabidopsis mutant with high cyclic electron flow around photosystem I (hcef) involving the NADPH dehydrogenase complex. Plant Cell (2010) 1.32
SNP markers and their impact on plant breeding. Int J Plant Genomics (2012) 1.32
An Arabidopsis thaliana high-affinity molybdate transporter required for efficient uptake of molybdate from soil. Proc Natl Acad Sci U S A (2007) 1.31
The Arabidopsis root hair cell wall formation mutant lrx1 is suppressed by mutations in the RHM1 gene encoding a UDP-L-rhamnose synthase. Plant Cell (2006) 1.31
An auxilin-like J-domain protein, JAC1, regulates phototropin-mediated chloroplast movement in Arabidopsis. Plant Physiol (2005) 1.30
A sequence-based genetic linkage map as a reference for Brassica rapa pseudochromosome assembly. BMC Genomics (2011) 1.29
Six new recombinant inbred populations for the study of quantitative traits in Arabidopsis thaliana. Theor Appl Genet (2008) 1.26
The Arabidopsis vitamin E pathway gene5-1 mutant reveals a critical role for phytol kinase in seed tocopherol biosynthesis. Plant Cell (2005) 1.26
A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions. J Exp Bot (2012) 1.26
SRFR1 negatively regulates plant NB-LRR resistance protein accumulation to prevent autoimmunity. PLoS Pathog (2010) 1.26
A member of the PLEIOTROPIC DRUG RESISTANCE family of ATP binding cassette transporters is required for the formation of a functional cuticle in Arabidopsis. Plant Cell (2011) 1.25
Characterization of a novel temperature-sensitive allele of the CUL1/AXR6 subunit of SCF ubiquitin-ligases. Plant J (2005) 1.25
Natural genetic variation in Arabidopsis: tools, traits and prospects for evolutionary ecology. Ann Bot (2007) 1.24
New connections across pathways and cellular processes: industrialized mutant screening reveals novel associations between diverse phenotypes in Arabidopsis. Plant Physiol (2008) 1.24
A gain-of-function mutation in the Arabidopsis pleiotropic drug resistance transporter PDR9 confers resistance to auxinic herbicides. Plant Physiol (2006) 1.24
Zeaxanthin deficiency enhances the high light sensitivity of an ascorbate-deficient mutant of Arabidopsis. Plant Physiol (2003) 1.24
Arabidopsis and the plant immune system. Plant J (2010) 1.23
Candidate genes and quantitative trait loci affecting fruit ascorbic acid content in three tomato populations. Plant Physiol (2007) 1.22
Activation of plant immune responses by a gain-of-function mutation in an atypical receptor-like kinase. Plant Physiol (2010) 1.21
A gene essential for hydrotropism in roots. Proc Natl Acad Sci U S A (2007) 1.20
A pipeline for high throughput detection and mapping of SNPs from EST databases. Mol Breed (2010) 1.20
High-diversity genes in the Arabidopsis genome. Genetics (2005) 1.19
The plant cuticle is required for osmotic stress regulation of abscisic acid biosynthesis and osmotic stress tolerance in Arabidopsis. Plant Cell (2011) 1.18
A rapid and versatile combined DNA/RNA extraction protocol and its application to the analysis of a novel DNA marker set polymorphic between Arabidopsis thaliana ecotypes Col-0 and Landsberg erecta. Plant Methods (2005) 1.18
Genetic control of storage oil synthesis in seeds of Arabidopsis. Plant Physiol (2004) 1.18
Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects. Plant Cell (2012) 1.17
Root hair defective4 encodes a phosphatidylinositol-4-phosphate phosphatase required for proper root hair development in Arabidopsis thaliana. Plant Cell (2008) 1.17
L-Ascorbate biosynthesis in higher plants: the role of VTC2. Trends Plant Sci (2008) 1.17
High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Plant Physiol (2006) 1.16
ePlant and the 3D data display initiative: integrative systems biology on the world wide web. PLoS One (2011) 1.16
Regulation of the expression of plant resistance gene SNC1 by a protein with a conserved BAT2 domain. Plant Physiol (2010) 1.16
The TOR pathway modulates the structure of cell walls in Arabidopsis. Plant Cell (2010) 1.14
Arabidopsis thickvein mutation affects vein thickness and organ vascularization, and resides in a provascular cell-specific spermine synthase involved in vein definition and in polar auxin transport. Plant Physiol (2005) 1.14
Alterations in the endogenous ascorbic acid content affect flowering time in Arabidopsis. Plant Physiol (2008) 1.14
The Arabidopsis transcription factor LUH/MUM1 is required for extrusion of seed coat mucilage. Plant Physiol (2011) 1.14
Deficiency in DNA methylation increases meiotic crossover rates in euchromatic but not in heterochromatic regions in Arabidopsis. Proc Natl Acad Sci U S A (2012) 1.13
Arabidopsis UVR8 regulates ultraviolet-B signal transduction and tolerance and contains sequence similarity to human regulator of chromatin condensation 1. Plant Physiol (2002) 2.36
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Res (2009) 2.10
Plantagora: modeling whole genome sequencing and assembly of plant genomes. PLoS One (2011) 1.90
Monoterpenes in the glandular trichomes of tomato are synthesized from a neryl diphosphate precursor rather than geranyl diphosphate. Proc Natl Acad Sci U S A (2009) 1.88
Genome sequencing reveals widespread virulence gene exchange among human Neisseria species. PLoS One (2010) 1.81
Harnessing plant trichome biochemistry for the production of useful compounds. Plant J (2008) 1.61
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control. Genome Res (2010) 1.46
Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii. Med Mycol (2010) 1.44
Ethylmethanesulfonate saturation mutagenesis in Arabidopsis to determine frequency of herbicide resistance. Plant Physiol (2003) 1.39
Engineering vitamin E content: from Arabidopsis mutant to soy oil. Plant Cell (2003) 1.34
Studies of a biochemical factory: tomato trichome deep expressed sequence tag sequencing and proteomics. Plant Physiol (2010) 1.33
Application of a high-throughput HPLC-MS/MS assay to Arabidopsis mutant screening; evidence that threonine aldolase plays a role in seed nutritional quality. Plant J (2004) 1.30
Large-scale reverse genetics in Arabidopsis: case studies from the Chloroplast 2010 Project. Plant Physiol (2009) 1.30
The Arabidopsis vitamin E pathway gene5-1 mutant reveals a critical role for phytol kinase in seed tocopherol biosynthesis. Plant Cell (2005) 1.26
Mass spectrometry screening reveals widespread diversity in trichome specialized metabolites of tomato chromosomal substitution lines. Plant J (2010) 1.25
New connections across pathways and cellular processes: industrialized mutant screening reveals novel associations between diverse phenotypes in Arabidopsis. Plant Physiol (2008) 1.24
Arabidopsis ESK1 encodes a novel regulator of freezing tolerance. Plant J (2007) 1.22
A small zinc finger thylakoid protein plays a role in maintenance of photosystem II in Arabidopsis thaliana. Plant Cell (2011) 1.21
Broad connections in the Arabidopsis seed metabolic network revealed by metabolite profiling of an amino acid catabolism mutant. Plant J (2009) 1.21
Predictive metabolic engineering: a goal for systems biology. Plant Physiol (2003) 1.19
Characterization of seed-specific benzoyloxyglucosinolate mutations in Arabidopsis thaliana. Plant J (2007) 1.17
The tomato terpene synthase gene family. Plant Physiol (2011) 1.14
Characterization of the Arabidopsis TU8 glucosinolate mutation, an allele of TERMINAL FLOWER2. Plant Mol Biol (2004) 1.12
LC-MS/MS assay for protein amino acids and metabolically related compounds for large-scale screening of metabolic phenotypes. Anal Chem (2007) 1.10
Chloroplast 2010: a database for large-scale phenotypic screening of Arabidopsis mutants. Plant Physiol (2011) 1.09
Achieving diversity in the face of constraints: lessons from metabolism. Science (2012) 1.07
Genomic and population analyses of the mating type loci in Coccidioides species reveal evidence for sexual reproduction and gene acquisition. Eukaryot Cell (2007) 1.04
Shotguns and SNPs: how fast and cheap sequencing is revolutionizing plant biology. Plant J (2010) 1.01
Identification of a BAHD acetyltransferase that produces protective acyl sugars in tomato trichomes. Proc Natl Acad Sci U S A (2012) 0.99
Evolution of TPS20-related terpene synthases influences chemical diversity in the glandular trichomes of the wild tomato relative Solanum habrochaites. Plant J (2012) 0.98
Twenty-first century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture. Plant Physiol (2010) 0.98
Reduced activity of Arabidopsis thaliana HMT2, a methionine biosynthetic enzyme, increases seed methionine content. Plant J (2008) 0.97
FATTY ACID DESATURASE4 of Arabidopsis encodes a protein distinct from characterized fatty acid desaturases. Plant J (2009) 0.91
Genome-enabled approaches shed new light on plant metabolism. Science (2008) 0.90
ups1, an Arabidopsis thaliana camalexin accumulation mutant defective in multiple defence signalling pathways. Plant J (2005) 0.89
Striking natural diversity in glandular trichome acylsugar composition is shaped by variation at the Acyltransferase2 locus in the wild tomato Solanum habrochaites. Plant Physiol (2012) 0.88
Chloroplast phenomics: systematic phenotypic screening of chloroplast protein mutants in Arabidopsis. Methods Mol Biol (2011) 0.88
A J-like protein influences fatty acid composition of chloroplast lipids in Arabidopsis. PLoS One (2011) 0.87
Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins. PLoS One (2013) 0.84
MIPHENO: data normalization for high throughput metabolite analysis. BMC Bioinformatics (2012) 0.82
Rapid LC-MS/MS profiling of protein amino acids and metabolically related compounds for large-scale assessment of metabolic phenotypes. Methods Mol Biol (2012) 0.82
Taming the hydra of specialized metabolism: how systems biology and comparative approaches are revolutionizing plant biochemistry. Curr Opin Plant Biol (2012) 0.82
Web-based Arabidopsis functional and structural genomics resources. Arabidopsis Book (2008) 0.79