Published in Nucleic Acids Res on August 01, 2002
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Fluorescence in situ Hybridization method using Peptide Nucleic Acid probes for rapid detection of Lactobacillus and Gardnerella spp. BMC Microbiol (2013) 0.96
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Effect of the earthworms Lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil. Microb Ecol (2009) 0.91
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Intense association of non-culturable endophytic bacteria with antibiotic-cleansed in vitro watermelon and their activation in degenerating cultures. Plant Cell Rep (2011) 0.86
Development and application of a novel peptide nucleic acid probe for the specific detection of Cronobacter genomospecies (Enterobacter sakazakii) in powdered infant formula. Appl Environ Microbiol (2009) 0.86
Identification of signature and primers specific to genus Pseudomonas using mismatched patterns of 16S rDNA sequences. BMC Bioinformatics (2003) 0.86
Novel high-rank phylogenetic lineages within a sulfur spring (Zodletone Spring, Oklahoma), revealed using a combined pyrosequencing-sanger approach. Appl Environ Microbiol (2012) 0.86
Bacterial indicator of agricultural management for soil under no-till crop production. PLoS One (2012) 0.85
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Field-based stable isotope probing reveals the identities of benzoic acid-metabolizing microorganisms and their in situ growth in agricultural soil. Appl Environ Microbiol (2008) 0.84
The Gut Microbiotassay: a high-throughput qPCR approach combinable with next generation sequencing to study gut microbial diversity. BMC Genomics (2013) 0.84
Detection of Low-Level Cardinium and Wolbachia Infections in Culicoides. Appl Environ Microbiol (2015) 0.82
A robust PCR primer design platform applied to the detection of Acidobacteria Group 1 in soil. Nucleic Acids Res (2012) 0.82
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Repeatedly evolved host-specific ectosymbioses between sulfur-oxidizing bacteria and amphipods living in a cave ecosystem. PLoS One (2012) 0.81
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High taxonomic diversity of cultivation-recalcitrant endophytic bacteria in grapevine field shoots, their in vitro introduction, and unsuspected persistence. Planta (2017) 0.80
Application of Locked Nucleic Acid (LNA) oligonucleotide-PCR clamping technique to selectively PCR amplify the SSU rRNA genes of bacteria in investigating the plant-associated community structures. Microbes Environ (2014) 0.80
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Automated design of probes for rRNA-targeted fluorescence in situ hybridization reveals the advantages of using dual probes for accurate identification. Appl Environ Microbiol (2014) 0.79
Patterns and determinants of halophilic archaea (class halobacteria) diversity in tunisian endorheic salt lakes and sebkhet systems. Appl Environ Microbiol (2015) 0.78
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Niphargus-Thiothrix associations may be widespread in sulphidic groundwater ecosystems: evidence from southeastern Romania. Mol Ecol (2013) 0.77
Toxic cyanobacterial bloom triggers in missisquoi bay, lake champlain, as determined by next-generation sequencing and quantitative PCR. Life (Basel) (2015) 0.77
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Enzyme production-based approach for determining the functions of microorganisms within a community. Appl Environ Microbiol (2004) 0.77
Re-evaluation of dioxygenase gene phylogeny for the development and validation of a quantitative assay for environmental aromatic hydrocarbon degraders. FEMS Microbiol Ecol (2015) 0.77
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Large scale explorative oligonucleotide probe selection for thousands of genetic groups on a computing grid: application to phylogenetic probe design using a curated small subunit ribosomal RNA gene database. ScientificWorldJournal (2014) 0.75
Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria. BMC Microbiol (2015) 0.75
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Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Appl Environ Microbiol (2003) 1.78
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Prokaryotic biodiversity and activity in the deep subseafloor biosphere. FEMS Microbiol Ecol (2008) 1.49
Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190. Environ Microbiol (2004) 1.44
Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments. FEMS Microbiol Ecol (2004) 1.35
Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments. Appl Environ Microbiol (2004) 1.34
Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype. Microbiology (2006) 1.14
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A comparison of stable-isotope probing of DNA and phospholipid fatty acids to study prokaryotic functional diversity in sulfate-reducing marine sediment enrichment slurries. Environ Microbiol (2006) 1.04
Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307). Environ Microbiol (2008) 1.03
Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG). Environ Microbiol (2009) 1.03
Molecular monitoring of culturable bacteria from deep-sea sediment of the Nankai Trough, Leg 190 Ocean Drilling Program. FEMS Microbiol Ecol (2004) 1.02
Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing. FEMS Microbiol Ecol (2010) 0.98
Chemosynthetic bacteria found in bivalve species from mud volcanoes of the Gulf of Cadiz. FEMS Microbiol Ecol (2010) 0.98
Diversity of gut microbiota increases with aging and starvation in the desert locust. Antonie Van Leeuwenhoek (2009) 0.97
Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov., sp. nov. Int J Syst Evol Microbiol (2006) 0.96
Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis. Environ Microbiol (2007) 0.95
Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet. ISME J (2007) 0.94
A comparative evaluation of five typing techniques for determining the diversity of fluorescent pseudomonads. J Microbiol Methods (2002) 0.92
Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions. FEMS Microbiol Ecol (2011) 0.91
Modified linker-PCR primers facilitate complete sequencing of DGGE DNA fragments. J Microbiol Methods (2008) 0.90
Characterization of Serratia isolates from soil, ecological implications and transfer of Serratia proteamaculans subsp. quinovora Grimont et al. 1983 to Serratia quinivorans corrig., sp. nov. Int J Syst Evol Microbiol (2002) 0.90
A dual-spectrometer approach to reflectance measurements under sub-optimal sky conditions. Opt Express (2012) 0.88
Analysis of DGGE profiles to explore the relationship between prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiol Ecol (2006) 0.88
Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum 'Bacteroidetes'. Int J Syst Evol Microbiol (2005) 0.88
Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species. FEMS Microbiol Lett (2006) 0.85
Metal compartmentation and speciation in a soil sentinel: the earthworm, Dendrodrilus rubidus. Environ Sci Technol (2005) 0.85
Distribution of candidate division JS1 and other Bacteria in tidal sediments of the German Wadden Sea using targeted 16S rRNA gene PCR-DGGE. FEMS Microbiol Ecol (2007) 0.84
Similarity of microbial and meiofaunal community analyses for mapping ecological effects of heavy-metal contamination in soil. FEMS Microbiol Ecol (2002) 0.82
Microbial diversity in Frenulata (Siboglinidae, Polychaeta) species from mud volcanoes in the Gulf of Cadiz (NE Atlantic). Antonie Van Leeuwenhoek (2011) 0.81
Contrasting relationships between biogeochemistry and prokaryotic diversity depth profiles along an estuarine sediment gradient. FEMS Microbiol Ecol (2013) 0.80
Culture-independent analysis of bacterial fuel contamination provides insight into the level of concordance with the standard industry practice of aerobic cultivation. Appl Environ Microbiol (2011) 0.80
Dynamic microbial community associated with iron-arsenic co-precipitation products from a groundwater storage system in Bangladesh. Microb Ecol (2012) 0.79
Biofilm microbial community of a thermophilic trickling biofilter used for continuous biohydrogen production. FEMS Microbiol Lett (2005) 0.77
Influence of flanking homology and insert size on the transformation frequency of Acinetobacter baylyi BD413. Environ Biosafety Res (2007) 0.77
Diversity of alpha-halocarboxylic acid dehalogenases in bacteria isolated from a pristine soil after enrichment and selection on the herbicide 2,2-dichloropropionic acid (Dalapon). Environ Microbiol (2003) 0.76
Horizontal transfer of dehalogenase genes on IncP1beta plasmids during bacterial adaptation to degrade alpha-halocarboxylic acids. FEMS Microbiol Ecol (2003) 0.76
Purification, crystallization and preliminary crystallographic analysis of DehI, a group I alpha-haloacid dehalogenase from Pseudomonas putida strain PP3. Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 0.75
Comparing the dehalogenase gene pool in cultivated alpha-halocarboxylic acid-degrading bacteria with the environmental metagene pool. Appl Environ Microbiol (2003) 0.75
Arabidopsis thaliana and Pisum sativum models demonstrate that root colonization is an intrinsic trait of Burkholderia cepacia complex bacteria. Microbiology (2013) 0.75
Transformation of Acinetobacter baylyi in non-sterile soil using recombinant plant nuclear DNA. Environ Biosafety Res (2007) 0.75
New tools for elucidating the ecology of micro-organisms in aquatic environments. FEMS Microbiol Ecol (2003) 0.75