Published in Proteins on September 01, 2002
Analysis of accessible surface of residues in proteins. Protein Sci (2003) 1.22
Exploring atomistic details of pH-dependent peptide folding. Proc Natl Acad Sci U S A (2006) 1.17
Long-range electron tunneling. J Am Chem Soc (2014) 1.16
A two-dimensional infrared study of localization, structure, and dynamics of a dipeptide in membrane environment. Biophys J (2004) 1.06
Role of lipids in spheroidal high density lipoproteins. PLoS Comput Biol (2010) 1.04
Peptide hairpins with strand segments containing alpha- and beta-amino acid residues: cross-strand aromatic interactions of facing Phe residues. Biopolymers (2005) 0.96
DNA-protein π-interactions in nature: abundance, structure, composition and strength of contacts between aromatic amino acids and DNA nucleobases or deoxyribose sugar. Nucleic Acids Res (2014) 0.96
Structural basis of substrate recognition by hematopoietic tyrosine phosphatase. Biochemistry (2008) 0.92
The Role of Aromatic-Aromatic Interactions in Strand-Strand Stabilization of β-Sheets. J Mol Biol (2013) 0.82
Fluorescence and UV resonance Raman study of peptide-vesicle interactions of human cathelicidin LL-37 and its F6W and F17W mutants. Biochemistry (2009) 0.82
Molecular dynamics analysis of the conformations of a beta-hairpin miniprotein. J Phys Chem B (2010) 0.80
Implications of aromatic-aromatic interactions: From protein structures to peptide models. Protein Sci (2015) 0.80
The environment of amide groups in protein-ligand complexes: H-bonds and beyond. J Mol Model (2005) 0.78
DNA-Directed Assembly of Nanogold Dimers: A Unique Dynamic Light Scattering Sensing Probe for Transcription Factor Detection. Sci Rep (2015) 0.77
Combinatorial protein engineering of proteolytically resistant mesotrypsin inhibitors as candidates for cancer therapy. Biochem J (2016) 0.77
Structural and spectropotentiometric analysis of Blastochloris viridis heterodimer mutant reaction center. Biochim Biophys Acta (2009) 0.76
Aromatic cluster mutations produce focal modulations of β-sheet structure. Protein Sci (2015) 0.75
Probing the Protein-Nanoparticle Interface: The Role of Aromatic Substitution Pattern on Affinity. Supramol Chem (2014) 0.75
Apolipoprotein L-I is the trypanosome lytic factor of human serum. Nature (2003) 4.33
Edgetic perturbation models of human inherited disorders. Mol Syst Biol (2009) 3.96
Proto-genes and de novo gene birth. Nature (2012) 3.43
Apolipoprotein L-I promotes trypanosome lysis by forming pores in lysosomal membranes. Science (2005) 3.06
'Edgetic' perturbation of a C. elegans BCL2 ortholog. Nat Methods (2009) 1.74
Revisiting the Ramachandran plot: hard-sphere repulsion, electrostatics, and H-bonding in the alpha-helix. Protein Sci (2003) 1.73
A new potent secondary amphipathic cell-penetrating peptide for siRNA delivery into mammalian cells. Mol Ther (2008) 1.58
Exclusive ubiquitination and sumoylation on overlapping lysine residues mediate NF-kappaB activation by the human T-cell leukemia virus tax oncoprotein. Mol Cell Biol (2005) 1.47
Protein-nucleic acid recognition: statistical analysis of atomic interactions and influence of DNA structure. Proteins (2005) 1.46
Juxtamembrane protein segments that contribute to recruitment of cholesterol into domains. Biochemistry (2006) 1.36
Analysis of accessible surface of residues in proteins. Protein Sci (2003) 1.22
New basic membrane-destabilizing peptides for plasmid-based gene delivery in vitro and in vivo. Mol Ther (2002) 1.22
The Ramachandran plots of glycine and pre-proline. BMC Struct Biol (2005) 1.20
Atomic force microscopy of supported lipid bilayers. Nat Protoc (2008) 1.19
Edgotype: a fundamental link between genotype and phenotype. Curr Opin Genet Dev (2013) 1.12
Prediction of peptide structure: how far are we? Proteins (2006) 1.08
Functional analysis of the cell division protein FtsW of Escherichia coli. J Bacteriol (2004) 1.06
Anti-hemostatic effects of a serpin from the saliva of the tick Ixodes ricinus. J Biol Chem (2006) 1.05
Cellular uptake of Antennapedia Penetratin peptides is a two-step process in which phase transfer precedes a tryptophan-dependent translocation. Nucleic Acids Res (2003) 1.04
In vitro characterization of the homogalacturonan-binding domain of the wall-associated kinase WAK1 using site-directed mutagenesis. Phytochemistry (2006) 1.03
The N-terminal juxtamembranous domain of KCNQ1 is critical for channel surface expression: implications in the Romano-Ward LQT1 syndrome. Circ Res (2006) 1.01
Cholesterol interaction with proteins that partition into membrane domains: an overview. Subcell Biochem (2010) 0.97
Partial atomic charges of amino acids in proteins. Proteins (2004) 0.97
Membrane topology of the Escherichia coli AmpG permease required for recycling of cell wall anhydromuropeptides and AmpC beta-lactamase induction. Antimicrob Agents Chemother (2005) 0.96
TP0453, a concealed outer membrane protein of Treponema pallidum, enhances membrane permeability. J Bacteriol (2005) 0.96
Exosites mediate the anti-inflammatory effects of a multifunctional serpin from the saliva of the tick Ixodes ricinus. FEBS J (2009) 0.96
Happy birthday cell penetrating peptides: already 20 years. Biochim Biophys Acta (2010) 0.95
Determination of the topology of the hydrophobic segment of mammalian diacylglycerol kinase epsilon in a cell membrane and its relationship to predictions from modeling. J Mol Biol (2008) 0.94
Hydrophobic substitutions in the first residue of the CRAC segment of the gp41 protein of HIV. Biochemistry (2007) 0.93
Interactions of ciprofloxacin with DPPC and DPPG: fluorescence anisotropy, ATR-FTIR and 31P NMR spectroscopies and conformational analysis. Biochim Biophys Acta (2008) 0.93
The role of proline in the membrane re-entrant helix of caveolin-1. J Biol Chem (2010) 0.91
Analysis of the C-terminal membrane anchor domains of hepatitis C virus glycoproteins E1 and E2: toward a topological model. J Virol (2002) 0.91
Characterization of a novel aphid prenyltransferase displaying dual geranyl/farnesyl diphosphate synthase activity. FEBS Lett (2008) 0.91
Aromatic side-chain interactions in proteins. II. Near- and far-sequence Phe-X pairs. Proteins (2002) 0.90
Distantly related lipocalins share two conserved clusters of hydrophobic residues: use in homology modeling. BMC Struct Biol (2008) 0.90
The Pseudomonas aeruginosa membranes: a target for a new amphiphilic aminoglycoside derivative? Biochim Biophys Acta (2011) 0.89
Ir-LBP, an ixodes ricinus tick salivary LTB4-binding lipocalin, interferes with host neutrophil function. PLoS One (2008) 0.88
Structural features conferring dual geranyl/farnesyl diphosphate synthase activity to an aphid prenyltransferase. Insect Biochem Mol Biol (2009) 0.88
Membrane destabilization induced by beta-amyloid peptide 29-42: importance of the amino-terminus. Chem Phys Lipids (2002) 0.87
Tilted properties of the 67-78 fragment of alpha-synuclein are responsible for membrane destabilization and neurotoxicity. Proteins (2007) 0.87
Effects of surfactin on membrane models displaying lipid phase separation. Biochim Biophys Acta (2012) 0.86
Prolactin/growth hormone-derived antiangiogenic peptides highlight a potential role of tilted peptides in angiogenesis. Proc Natl Acad Sci U S A (2006) 0.86
Insight into the cellular uptake mechanism of a secondary amphipathic cell-penetrating peptide for siRNA delivery. Biochemistry (2010) 0.86
In silico predictions of 3D structures of linear and cyclic peptides with natural and non-proteinogenic residues. J Pept Sci (2011) 0.86
Intact intracellular tail is critical for proper functioning of the tumor-associated, hypoxia-regulated carbonic anhydrase IX. FEBS Lett (2009) 0.85
Standardized evaluation of protein stability. Biochim Biophys Acta (2010) 0.84
Role of the lid hydrophobicity pattern in pancreatic lipase activity. J Biol Chem (2005) 0.83
Aromatic side-chain interactions in proteins. Near- and far-sequence His-X pairs. Biochim Biophys Acta (2003) 0.83
HIV-1 gp41 and gp160 are hyperthermostable proteins in a mesophilic environment. Characterization of gp41 mutants. Eur J Biochem (2004) 0.83
Interaction of the 106-126 prion peptide with lipid membranes and potential implication for neurotoxicity. Biochem Biophys Res Commun (2005) 0.83
Acylated and unacylated ghrelin binding to membranes and to ghrelin receptor: towards a better understanding of the underlying mechanisms. Biochim Biophys Acta (2010) 0.82
Transferrin-binding protein B of Neisseria meningitidis: sequence-based identification of the transferrin-Binding site confirmed by site-directed mutagenesis. J Bacteriol (2004) 0.82
Mutational analysis of the TRE2 oncogene encoding an inactive RabGAP. Biotechnol Lett (2007) 0.82
Ixodes ricinus tick lipocalins: identification, cloning, phylogenetic analysis and biochemical characterization. PLoS One (2008) 0.82
Characterization of the interactions between fluoroquinolone antibiotics and lipids: a multitechnique approach. Biophys J (2008) 0.81
Realistic modeling approaches of structure-function properties of CPPs in non-covalent complexes. Biochim Biophys Acta (2010) 0.80
Tilted peptides: the history. Curr Protein Pept Sci (2006) 0.80
Large changes in the CRAC segment of gp41 of HIV do not destroy fusion activity if the segment interacts with cholesterol. Biochemistry (2008) 0.80
Computational study of colipase interaction with lipid droplets and bile salt micelles. Proteins (2008) 0.79
Multi-scale simulation of the simian immunodeficiency virus fusion peptide. J Phys Chem B (2012) 0.79
SAHBNET, an accessible surface-based elastic network: an application to membrane protein. Int J Mol Sci (2013) 0.78
Mode of membrane interaction and fusogenic properties of a de novo transmembrane model peptide depend on the length of the hydrophobic core. J Biol Chem (2007) 0.78
Structural polymorphism of two CPP: an important parameter of activity. Biochim Biophys Acta (2008) 0.78
Modeling of non-covalent complexes of the cell-penetrating peptide CADY and its siRNA cargo. Biochim Biophys Acta (2012) 0.78
Self-assembling peptide-based nanoparticles for siRNA delivery in primary cell lines. Small (2012) 0.78
PepLook: an innovative in silico tool for determination of structure, polymorphism and stability of peptides. Adv Exp Med Biol (2009) 0.78
Determination of the minimal fusion peptide of bovine leukemia virus gp30. Biochem Biophys Res Commun (2007) 0.78
The minimal fusion peptide of simian immunodeficiency virus corresponds to the 11 first residues of gp32. J Pept Sci (2008) 0.77
The SIV tilted peptide induces cylindrical reverse micelles in supported lipid bilayers. Biochemistry (2006) 0.77
Probing the interaction forces between hydrophobic peptides and supported lipid bilayers using AFM. J Mol Recognit (2007) 0.77
Monolayer properties of uronic acid bicatenary derivatives at the air-water interface: effect of hydroxyl group stereochemistry evidenced by experimental and computational approaches. Phys Chem Chem Phys (2011) 0.77
Insertion of X-ray structures of proteins in membranes. J Mol Graph Model (2003) 0.77
Rational design of complementary peptides to the betaAmyloid 29-42 fusion peptide: an application of PepDesign. Biochim Biophys Acta (2005) 0.76
Piracetam inhibits the lipid-destabilising effect of the amyloid peptide Abeta C-terminal fragment. Biochim Biophys Acta (2003) 0.76
Domain formation and permeabilization induced by the saponin α-hederin and its aglycone hederagenin in a cholesterol-containing bilayer. Langmuir (2014) 0.76
A new in-silico method for determination of helical transmembrane domains based on the PepLook scan: application to IL-2Rβ and IL-2Rγc receptor chains. BMC Struct Biol (2011) 0.75
Aromatic side-chain interactions in proteins: near- and far-sequence Tyr-X pairs. Proteins (2004) 0.75
Determination of the minimal fusion peptide of HIV, SIV and BLV fusion glycoproteins. Adv Exp Med Biol (2009) 0.75
Fusogenic tilted peptides induce nanoscale holes in supported phosphatidylcholine bilayers. Langmuir (2005) 0.75
Impacts of the carbonyl group location of ester bond on interfacial properties of sugar-based surfactants: experimental and computational evidences. J Phys Chem B (2009) 0.75
Exploring the active site cavity of human pancreatic lipase. Biochem Biophys Res Commun (2008) 0.75