Published in Immunogenetics on July 16, 2002
Comparative genomics of major histocompatibility complexes. Immunogenetics (2004) 2.31
Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex. PLoS Biol (2006) 2.17
Genomic organization of duplicated major histocompatibility complex class I regions in Atlantic salmon (Salmo salar). BMC Genomics (2007) 1.14
A third broad lineage of major histocompatibility complex (MHC) class I in teleost fish; MHC class II linkage and processed genes. Immunogenetics (2007) 1.13
Physical and genetic mapping of the rainbow trout major histocompatibility regions: evidence for duplication of the class I region. Immunogenetics (2003) 1.12
A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish. BMC Genomics (2005) 1.06
Fugu ESTs: new resources for transcription analysis and genome annotation. Genome Res (2003) 1.05
Interchromosomal duplication of major histocompatibility complex class I regions in rainbow trout (Oncorhynchus mykiss), a species with a presumably recent tetraploid ancestry. Immunogenetics (2005) 0.92
Recent duplication and inter-locus gene conversion in major histocompatibility class II genes in a teleost, the three-spined stickleback. Immunogenetics (2004) 0.91
A cotton (Gossypium hirsutum) DRE-binding transcription factor gene, GhDREB, confers enhanced tolerance to drought, high salt, and freezing stresses in transgenic wheat. Plant Cell Rep (2008) 0.91
Nucleotide sequencing analysis of the swine 433-kb genomic segment located between the non-classical and classical SLA class I gene clusters. Immunogenetics (2003) 0.90
Suggestive association of major histocompatibility IB genetic markers with resistance to bacterial cold water disease in rainbow trout (Oncorhynchus mykiss). Mar Biotechnol (NY) (2008) 0.88
Evolution and comparative analysis of the MHC Class III inflammatory region. BMC Genomics (2006) 0.87
Identification and regulatory analysis of rainbow trout tapasin and tapasin-related genes. Immunogenetics (2006) 0.87
Evolutionary analysis of two classical MHC class I loci of the medaka fish, Oryzias latipes: haplotype-specific genomic diversity, locus-specific polymorphisms, and interlocus homogenization. Immunogenetics (2010) 0.79
Single nucleotide polymorphisms, haplotypes and combined genotypes in MYH₃ gene and their associations with growth and carcass traits in Qinchuan cattle. Mol Biol Rep (2012) 0.78
Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence. Nucleic Acids Res (2003) 0.75
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science (2002) 20.59
The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature (2012) 20.47
Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol (2004) 10.59
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. Hum Mol Genet (2003) 6.82
Glioma stem cell lines expanded in adherent culture have tumor-specific phenotypes and are suitable for chemical and genetic screens. Cell Stem Cell (2009) 6.77
Localization of type 1 diabetes susceptibility to the MHC class I genes HLA-B and HLA-A. Nature (2007) 6.67
Intestinal label-retaining cells are secretory precursors expressing Lgr5. Nature (2013) 4.83
Antisense transcripts in the human genome. Trends Genet (2002) 3.33
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat Genet (2013) 2.76
Exome sequencing allows for rapid gene identification in a Charcot-Marie-Tooth family. Ann Neurol (2011) 2.09
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer. Genes Dev (2010) 2.06
An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes. Nucleic Acids Res (2006) 1.87
Whole-exome sequencing links a variant in DHDDS to retinitis pigmentosa. Am J Hum Genet (2011) 1.85
Whole-exome sequencing efficiently detects rare mutations in autosomal recessive nonsyndromic hearing loss. PLoS One (2012) 1.83
Fine-mapping identifies multiple prostate cancer risk loci at 5p15, one of which associates with TERT expression. Hum Mol Genet (2013) 1.78
Copynumber: Efficient algorithms for single- and multi-track copy number segmentation. BMC Genomics (2012) 1.74
Human GLI3 intragenic conserved non-coding sequences are tissue-specific enhancers. PLoS One (2007) 1.68
Ancient duplicated conserved noncoding elements in vertebrates: a genomic and functional analysis. Genome Res (2006) 1.58
Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region. Genomics (2004) 1.56
Comparison of three targeted enrichment strategies on the SOLiD sequencing platform. PLoS One (2011) 1.55
Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key. Trends Genet (2005) 1.52
Upper temperature limits of tropical marine ectotherms: global warming implications. PLoS One (2011) 1.50
Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans. Genome Biol (2007) 1.41
Characterization of a novel gene adjacent to PAX6, revealing synteny conservation with functional significance. Mamm Genome (2002) 1.38
CONDOR: a database resource of developmentally associated conserved non-coding elements. BMC Dev Biol (2007) 1.35
Characterization of the five novel Ly-6 superfamily members encoded in the MHC, and detection of cells expressing their potential ligands. Protein Sci (2006) 1.33
Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse. Genome Res (2003) 1.32
Early evolution of conserved regulatory sequences associated with development in vertebrates. PLoS Genet (2009) 1.26
Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3. Genomics (2005) 1.22
Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both. Curr Opin Genet Dev (2005) 1.20
Saliva samples are a viable alternative to blood samples as a source of DNA for high throughput genotyping. BMC Med Genomics (2012) 1.20
Challenges in whole exome sequencing: an example from hereditary deafness. PLoS One (2012) 1.17
The mtDNA mutation spectrum of the progeroid Polg mutator mouse includes abundant control region multimers. Cell Metab (2010) 1.16
Ultraconserved non-coding sequence element controls a subset of spatiotemporal GLI3 expression. Dev Growth Differ (2007) 1.16
The founding charter of the Genomic Observatories Network. Gigascience (2014) 1.16
Mutations in OTOGL, encoding the inner ear protein otogelin-like, cause moderate sensorineural hearing loss. Am J Hum Genet (2012) 1.15
Evolution of secretin family GPCR members in the metazoa. BMC Evol Biol (2006) 1.14
Organization and evolution of a gene-rich region of the mouse genome: a 12.7-Mb region deleted in the Del(13)Svea36H mouse. Genome Res (2004) 1.12
NKp30 (NCR3) is a pseudogene in 12 inbred and wild mouse strains, but an expressed gene in Mus caroli. Mol Biol Evol (2005) 1.12
Recurrent and private MYO15A mutations are associated with deafness in the Turkish population. Genet Test Mol Biomarkers (2010) 1.11
Analyses of the extent of shared synteny and conserved gene orders between the genome of Fugu rubripes and human 20q. Genome Res (2002) 1.09
Comparative genomics using Fugu reveals insights into regulatory subfunctionalization. Genome Biol (2007) 1.09
Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation. Nature (2012) 1.08
Genomic anatomy of the Tyrp1 (brown) deletion complex. Proc Natl Acad Sci U S A (2006) 1.07
Fugu ESTs: new resources for transcription analysis and genome annotation. Genome Res (2003) 1.05
Xena, a full-length basal retroelement from tetraodontid fish. Mol Biol Evol (2002) 1.04
Tissue banking of diagnostic lung cancer biopsies for extraction of high quality RNA. J Thorac Oncol (2010) 1.00
Divergent transcriptomic responses to repeated and single cold exposures in Drosophila melanogaster. J Exp Biol (2011) 0.99
Molecular evolution of the vertebrate blood coagulation network. Thromb Haemost (2003) 0.98
HES6 drives a critical AR transcriptional programme to induce castration-resistant prostate cancer through activation of an E2F1-mediated cell cycle network. EMBO Mol Med (2014) 0.98
Transcriptional analysis of a novel cluster of LY-6 family members in the human and mouse major histocompatibility complex: five genes with many splice forms. Genomics (2002) 0.95
The PAX258 gene subfamily: a comparative perspective. Dev Dyn (2009) 0.94
Minor change, major difference: divergent functions of highly conserved cis-regulatory elements subsequent to whole genome duplication events. Development (2011) 0.94
Discovering genes associated with dormancy in the monogonont rotifer Brachionus plicatilis. BMC Genomics (2009) 0.94
Analysis of the human pituitary proteome by data independent label-free liquid chromatography tandem mass spectrometry. Proteomics (2011) 0.92
Striking nucleotide frequency pattern at the borders of highly conserved vertebrate non-coding sequences. Trends Genet (2005) 0.92
Functional analysis of conserved non-coding regions around the short stature hox gene (shox) in whole zebrafish embryos. PLoS One (2011) 0.92
Organization of conserved elements near key developmental regulators in vertebrate genomes. Adv Genet (2008) 0.92
Adaptor signalling proteins Grb2 and Grb7 are recruited by human G6f, a novel member of the immunoglobulin superfamily encoded in the MHC. Biochem J (2003) 0.90
Antipsychotic treatment alters protein expression associated with presynaptic function and nervous system development in rat frontal cortex. J Proteome Res (2009) 0.90
Molecular characterisation of the SAND protein family: a study based on comparative genomics, structural bioinformatics and phylogeny. Cell Mol Biol Lett (2004) 0.89
Schizophrenia: metabolic aspects of aetiology, diagnosis and future treatment strategies. Psychoneuroendocrinology (2012) 0.88
Divergent evolution of the myosin heavy chain gene family in fish and tetrapods: evidence from comparative genomic analysis. Physiol Genomics (2007) 0.88
Characterisation, expression and promoter analysis of an interleukin 10 homologue in the puffer fish, Fugu rubripes. Immunogenetics (2003) 0.87
Acclimation and thermal tolerance in Antarctic marine ectotherms. J Exp Biol (2014) 0.86
Lens development depends on a pair of highly conserved Sox21 regulatory elements. Dev Biol (2012) 0.85
Identification of targeted analyte clusters for studies of schizophrenia. Mol Cell Proteomics (2009) 0.85
Ancient Pbx-Hox signatures define hundreds of vertebrate developmental enhancers. BMC Genomics (2011) 0.85
Transcriptome and peptidome characterisation of the main neuropeptides and peptidic hormones of a euphausiid: the Ice Krill, Euphausia crystallorophias. PLoS One (2013) 0.85
Cold hardening processes in the Antarctic springtail, Cryptopygus antarcticus: clues from a microarray. J Insect Physiol (2008) 0.85
A novel gene encoding a coiled-coil mitochondrial protein located at the telomeric end of the human MHC Class III region. Gene (2003) 0.84
The jury is out on "guilt by association" trials. Brief Funct Genomic Proteomic (2002) 0.83
Low global sensitivity of metabolic rate to temperature in calcified marine invertebrates. Oecologia (2013) 0.83
Novel bioactive parathyroid hormone and related peptides in teleost fish. FEBS Lett (2005) 0.83
Unexpected fine-scale population structure in a broadcast-spawning Antarctic marine mollusc. PLoS One (2012) 0.83
Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice. Nucleic Acids Res (2003) 0.83
Skin healing and scale regeneration in fed and unfed sea bream, Sparus auratus. BMC Genomics (2011) 0.83
The nicotinic acetylcholine receptor gene family of the pufferfish, Fugu rubripes. Genomics (2003) 0.82
Parallel evolution of chordate cis-regulatory code for development. PLoS Genet (2013) 0.82
Two novel determinants of etoposide resistance in small cell lung cancer. Cancer Res (2011) 0.82
A genomic approach to reveal novel genes associated with myotube formation in the model teleost, Takifugu rubripes. Physiol Genomics (2005) 0.82
Comparative analysis of vertebrate Shh genes identifies novel conserved non-coding sequence. Mamm Genome (2003) 0.81
AP1 genes in Fugu indicate a divergent transcriptional control to that of mammals. Mamm Genome (2003) 0.81
Converging evidence of blood-based biomarkers for schizophrenia: an update. Int Rev Neurobiol (2011) 0.80
Gilthead sea bream (Sparus auratus) and European sea bass (Dicentrarchus labrax) expressed sequence tags: Characterization, tissue-specific expression and gene markers. Mar Genomics (2010) 0.80
Regulation of expression of two LY-6 family genes by intron retention and transcription induced chimerism. BMC Mol Biol (2008) 0.80
Tolerance of Antarctic soil fungi to hydrocarbons. Sci Total Environ (2006) 0.80
Effect of cryopreservation on mitochondrial DNA of zebrafish (Danio rerio) blastomere cells. Mutat Res (2005) 0.80
A distinct bipartite motif is required for the localization of inhibitory kappaB-like (IkappaBL) protein to nuclear speckles. Biochem J (2002) 0.80
Persistence of duplicated PAC1 receptors in the teleost, Sparus auratus. BMC Evol Biol (2007) 0.80
Transcriptome pyrosequencing of the Antarctic brittle star Ophionotus victoriae. Mar Genomics (2012) 0.79