Published in Adv Genet on January 01, 2008
UCNEbase--a database of ultraconserved non-coding elements and genomic regulatory blocks. Nucleic Acids Res (2012) 1.20
Distal regions of the human IFNG locus direct cell type-specific expression. J Immunol (2010) 0.99
Two lamprey Hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome Hedgehogs. PLoS One (2010) 0.96
Evolution of transcriptional enhancers and animal diversity. Philos Trans R Soc Lond B Biol Sci (2013) 0.94
MIP/Aquaporin 0 represents a direct transcriptional target of PITX3 in the developing lens. PLoS One (2011) 0.94
From remote enhancers to gene regulation: charting the genome's regulatory landscapes. Philos Trans R Soc Lond B Biol Sci (2013) 0.86
Enhancer turnover and conserved regulatory function in vertebrate evolution. Philos Trans R Soc Lond B Biol Sci (2013) 0.85
A retrotransposon insertion in the 5' regulatory domain of Ptf1a results in ectopic gene expression and multiple congenital defects in Danforth's short tail mouse. PLoS Genet (2013) 0.85
Conserved noncoding elements follow power-law-like distributions in several genomes as a result of genome dynamics. PLoS One (2014) 0.81
Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout. BMC Genomics (2009) 0.79
Kiwi genome provides insights into evolution of a nocturnal lifestyle. Genome Biol (2015) 0.78
The most deeply conserved noncoding sequences in plants serve similar functions to those in vertebrates despite large differences in evolutionary rates. Plant Cell (2014) 0.77
Conservation of gene linkage in dispersed vertebrate NK homeobox clusters. Dev Genes Evol (2009) 0.76
The Evolution of Bony Vertebrate Enhancers at Odds with Their Coding Sequence Landscape. Genome Biol Evol (2015) 0.76
Organizational heterogeneity of vertebrate genomes. PLoS One (2012) 0.76
Expansion by whole genome duplication and evolution of the sox gene family in teleost fish. PLoS One (2017) 0.75
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science (2002) 20.59
Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol (2004) 10.59
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. Hum Mol Genet (2003) 6.82
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat Genet (2013) 2.76
Human GLI3 intragenic conserved non-coding sequences are tissue-specific enhancers. PLoS One (2007) 1.68
Ancient duplicated conserved noncoding elements in vertebrates: a genomic and functional analysis. Genome Res (2006) 1.58
Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key. Trends Genet (2005) 1.52
Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans. Genome Biol (2007) 1.41
Characterization of a novel gene adjacent to PAX6, revealing synteny conservation with functional significance. Mamm Genome (2002) 1.38
CONDOR: a database resource of developmentally associated conserved non-coding elements. BMC Dev Biol (2007) 1.35
Early evolution of conserved regulatory sequences associated with development in vertebrates. PLoS Genet (2009) 1.26
Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3. Genomics (2005) 1.22
Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both. Curr Opin Genet Dev (2005) 1.20
Ultraconserved non-coding sequence element controls a subset of spatiotemporal GLI3 expression. Dev Growth Differ (2007) 1.16
Comparative genomics using Fugu reveals insights into regulatory subfunctionalization. Genome Biol (2007) 1.09
Analyses of the extent of shared synteny and conserved gene orders between the genome of Fugu rubripes and human 20q. Genome Res (2002) 1.09
Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation. Nature (2012) 1.08
Fugu ESTs: new resources for transcription analysis and genome annotation. Genome Res (2003) 1.05
Xena, a full-length basal retroelement from tetraodontid fish. Mol Biol Evol (2002) 1.04
Molecular evolution of the vertebrate blood coagulation network. Thromb Haemost (2003) 0.98
The PAX258 gene subfamily: a comparative perspective. Dev Dyn (2009) 0.94
Minor change, major difference: divergent functions of highly conserved cis-regulatory elements subsequent to whole genome duplication events. Development (2011) 0.94
Striking nucleotide frequency pattern at the borders of highly conserved vertebrate non-coding sequences. Trends Genet (2005) 0.92
Functional analysis of conserved non-coding regions around the short stature hox gene (shox) in whole zebrafish embryos. PLoS One (2011) 0.92
Fugu orthologues of human major histocompatibility complex genes: a genome survey. Immunogenetics (2002) 0.91
Molecular characterisation of the SAND protein family: a study based on comparative genomics, structural bioinformatics and phylogeny. Cell Mol Biol Lett (2004) 0.89
Divergent evolution of the myosin heavy chain gene family in fish and tetrapods: evidence from comparative genomic analysis. Physiol Genomics (2007) 0.88
Lens development depends on a pair of highly conserved Sox21 regulatory elements. Dev Biol (2012) 0.85
Ancient Pbx-Hox signatures define hundreds of vertebrate developmental enhancers. BMC Genomics (2011) 0.85
Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice. Nucleic Acids Res (2003) 0.83
The nicotinic acetylcholine receptor gene family of the pufferfish, Fugu rubripes. Genomics (2003) 0.82
A genomic approach to reveal novel genes associated with myotube formation in the model teleost, Takifugu rubripes. Physiol Genomics (2005) 0.82
Parallel evolution of chordate cis-regulatory code for development. PLoS Genet (2013) 0.82
Comparative analysis of vertebrate Shh genes identifies novel conserved non-coding sequence. Mamm Genome (2003) 0.81
AP1 genes in Fugu indicate a divergent transcriptional control to that of mammals. Mamm Genome (2003) 0.81
Effect of cryopreservation on mitochondrial DNA of zebrafish (Danio rerio) blastomere cells. Mutat Res (2005) 0.80
Persistence of duplicated PAC1 receptors in the teleost, Sparus auratus. BMC Evol Biol (2007) 0.80
Characterisation of a gene cluster in Fugu rubripes containing the complement component C4 gene. Gene (2003) 0.78
Isolation and characterisation of the corticotropin releasing factor receptor 1 (CRFR1) gene in a teleost fish, Fugu rubripes. DNA Seq (2003) 0.77
Characterisation of conserved non-coding sequences in vertebrate genomes using bioinformatics, statistics and functional studies. Comp Biochem Physiol Part D Genomics Proteomics (2005) 0.77
Comparative analysis of vertebrate dystrophin loci indicate intron gigantism as a common feature. Genome Res (2003) 0.77
Capturing the regulatory interactions of eukaryote genomes. Brief Funct Genomics (2012) 0.76
Cis-regulatory control of human GLI2 expression in the developing neural tube and limb bud. Dev Dyn (2015) 0.76
A Fugu-Human Genome Synteny Viewer: web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes. Nucleic Acids Res (2004) 0.75
Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence. Nucleic Acids Res (2003) 0.75
Data handling and dissemination in proteomics and genomics. Brief Funct Genomic Proteomic (2003) 0.75
International symposium on functional genomics of pufferfish: Recent advances and perspective The University of Tokyo, Yayoi Auditorium, Tokyo, Japan, 3rd-6th Nov 2004. Comp Biochem Physiol Part D Genomics Proteomics (2006) 0.75
Genomic characterisation of putative growth hormone releasing hormone (GHRH) receptor genes in the teleost fish Fugu rubripes. DNA Seq (2003) 0.75
What is systems biology? Brief Funct Genomic Proteomic (2008) 0.75