Published in Environ Sci Technol on September 15, 2002
Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species. Appl Environ Microbiol (2003) 1.87
Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet (2009) 1.61
Geobacter lovleyi sp. nov. strain SZ, a novel metal-reducing and tetrachloroethene-dechlorinating bacterium. Appl Environ Microbiol (2006) 1.39
Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria and their description as Desulfuromonas michiganensis sp. nov. Appl Environ Microbiol (2003) 1.33
Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi. Appl Environ Microbiol (2008) 1.18
Molecular characterization of a dechlorinating community resulting from in situ biostimulation in a trichloroethene-contaminated deep, fractured basalt aquifer and comparison to a derivative laboratory culture. Appl Environ Microbiol (2004) 1.10
Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides. BMC Genomics (2011) 1.03
Characterizing the metabolism of Dehalococcoides with a constraint-based model. PLoS Comput Biol (2010) 1.01
Dichloromethane fermentation by a Dehalobacter sp. in an enrichment culture derived from pristine river sediment. Appl Environ Microbiol (2011) 0.94
Reductive debromination of polybrominated diphenyl ethers by anaerobic bacteria from soils and sediments. Appl Environ Microbiol (2009) 0.90
Coupling aggressive mass removal with microbial reductive dechlorination for remediation of DNAPL source zones: a review and assessment. Environ Health Perspect (2005) 0.90
In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes. Microb Biotechnol (2012) 0.86
The role of syntrophic associations in sustaining anaerobic mineralization of chlorinated organic compounds. Environ Health Perspect (2005) 0.85
Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847). Stand Genomic Sci (2010) 0.84
Methanosarcina spp. drive vinyl chloride dechlorination via interspecies hydrogen transfer. Appl Environ Microbiol (2006) 0.83
Identification and environmental distribution of dcpA, which encodes the reductive dehalogenase catalyzing the dichloroelimination of 1,2-dichloropropane to propene in organohalide-respiring chloroflexi. Appl Environ Microbiol (2013) 0.82
Microbial Community Response of an Organohalide Respiring Enrichment Culture to Permanganate Oxidation. PLoS One (2015) 0.78
Resolution of culture Clostridium bifermentans DPH-1 into two populations, a Clostridium sp. and tetrachloroethene-dechlorinating Desulfitobacterium hafniense strain JH1. Appl Environ Microbiol (2008) 0.78
Impact of Ammonium on Syntrophic Organohalide-Respiring and Fermenting Microbial Communities. mSphere (2016) 0.77
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol (2007) 60.97
DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community. Appl Environ Microbiol (1988) 13.80
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol (2007) 12.76
Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A (2005) 9.63
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res (2013) 6.36
The bacterial species definition in the genomic era. Philos Trans R Soc Lond B Biol Sci (2006) 4.47
Towards environmental systems biology of Shewanella. Nat Rev Microbiol (2008) 4.37
Towards a genome-based taxonomy for prokaryotes. J Bacteriol (2005) 4.18
Trends between gene content and genome size in prokaryotic species with larger genomes. Proc Natl Acad Sci U S A (2004) 3.89
Dechlorination of Four Commercial Polychlorinated Biphenyl Mixtures (Aroclors) by Anaerobic Microorganisms from Sediments. Appl Environ Microbiol (1990) 3.46
Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing. Proc Natl Acad Sci U S A (2009) 3.16
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs. Proc Natl Acad Sci U S A (2012) 3.10
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc Natl Acad Sci U S A (2006) 3.07
Spatial and resource factors influencing high microbial diversity in soil. Appl Environ Microbiol (2002) 2.99
Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution. Microb Ecol (2007) 2.78
Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proc Natl Acad Sci U S A (2007) 2.78
Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium. Nature (2003) 2.67
Tackling soil diversity with the assembly of large, complex metagenomes. Proc Natl Acad Sci U S A (2014) 2.65
In-feed antibiotic effects on the swine intestinal microbiome. Proc Natl Acad Sci U S A (2012) 2.50
Diverse and abundant antibiotic resistance genes in Chinese swine farms. Proc Natl Acad Sci U S A (2013) 2.48
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc Natl Acad Sci U S A (2011) 2.21
Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress. Appl Environ Microbiol (2002) 2.14
Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains. Appl Environ Microbiol (2006) 2.12
Toward a more robust assessment of intraspecies diversity, using fewer genetic markers. Appl Environ Microbiol (2006) 2.07
Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium. Appl Environ Microbiol (2002) 2.02
Environmental fate of the next generation refrigerant 2,3,3,3-tetrafluoropropene (HFO-1234yf). Environ Sci Technol (2014) 1.97
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proc Natl Acad Sci U S A (2005) 1.93
The Exiguobacterium genus: biodiversity and biogeography. Extremophiles (2009) 1.91
Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species. Appl Environ Microbiol (2003) 1.87
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol (2007) 1.83
Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1. Appl Environ Microbiol (2004) 1.82
Cryptic lineages of the genus Escherichia. Appl Environ Microbiol (2009) 1.81
FunGene: the functional gene pipeline and repository. Front Microbiol (2013) 1.80
Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate. Appl Environ Microbiol (2006) 1.79
Isolation and characterization of Dehalococcoides sp. strain FL2, a trichloroethene (TCE)- and 1,2-dichloroethene-respiring anaerobe. Environ Microbiol (2005) 1.78
Microbial dehalorespiration with 1,1,1-trichloroethane. Science (2002) 1.75
Changes in land use alter the structure of bacterial communities in Western Amazon soils. ISME J (2009) 1.72
Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils. Proc Natl Acad Sci U S A (2012) 1.71
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME J (2010) 1.71
Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Appl Environ Microbiol (2002) 1.68
Multiple nonidentical reductive-dehalogenase-homologous genes are common in Dehalococcoides. Appl Environ Microbiol (2004) 1.65
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering. Proc Natl Acad Sci U S A (2011) 1.63
Species abundance and diversity of Burkholderia cepacia complex in the environment. Appl Environ Microbiol (2005) 1.62
Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet (2009) 1.61
Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides-containing cultures. Appl Environ Microbiol (2005) 1.55
Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities. Proc Natl Acad Sci U S A (2012) 1.54
Amplification of uncultured single-stranded DNA viruses from rice paddy soil. Appl Environ Microbiol (2008) 1.53
Bacterial community in ancient Siberian permafrost as characterized by culture and culture-independent methods. Astrobiology (2006) 1.53
Gene-Z: a device for point of care genetic testing using a smartphone. Lab Chip (2012) 1.52
Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400T and relatives as Burkholderia xenovorans sp. nov. Int J Syst Evol Microbiol (2004) 1.50
Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. Environ Microbiol (2003) 1.49
Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors. OMICS (2002) 1.48
Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proc Natl Acad Sci U S A (2009) 1.47
Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data. MBio (2014) 1.46
The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth. Appl Environ Microbiol (2010) 1.44
Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach. BMC Genomics (2008) 1.43
Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico. Appl Environ Microbiol (2003) 1.43
Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J (2007) 1.41
Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. Int J Syst Evol Microbiol (2002) 1.40
Geobacter lovleyi sp. nov. strain SZ, a novel metal-reducing and tetrachloroethene-dechlorinating bacterium. Appl Environ Microbiol (2006) 1.39
Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria and their description as Desulfuromonas michiganensis sp. nov. Appl Environ Microbiol (2003) 1.33
Quantitative detection of microbial genes by using DNA microarrays. Appl Environ Microbiol (2002) 1.32
Shewanella--the environmentally versatile genome. Nat Biotechnol (2002) 1.32
Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. Extremophiles (2006) 1.31
Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME J (2009) 1.31
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proc Natl Acad Sci U S A (2014) 1.31
Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases. Philos Trans R Soc Lond B Biol Sci (2013) 1.30
Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool. MBio (2013) 1.28
Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments. Appl Environ Microbiol (2006) 1.28
On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes. Nucleic Acids Res (2006) 1.27
Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. Int J Syst Evol Microbiol (2006) 1.27
The Dehalococcoides population in sediment-free mixed cultures metabolically dechlorinates the commercial polychlorinated biphenyl mixture aroclor 1260. Appl Environ Microbiol (2007) 1.26
The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the delta-proteobacteria. PLoS One (2008) 1.25
Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico. Appl Environ Microbiol (2008) 1.25
Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels. Appl Environ Microbiol (2008) 1.24
Coping with our cold planet. Appl Environ Microbiol (2008) 1.22
Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Appl Environ Microbiol (2003) 1.21
Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation. ISME J (2010) 1.19
Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi. Appl Environ Microbiol (2008) 1.18
Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. Int J Syst Evol Microbiol (2006) 1.18
A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community. Microbiome (2013) 1.17
Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site. Appl Environ Microbiol (2011) 1.17
Populations implicated in anaerobic reductive dechlorination of 1,2-dichloropropane in highly enriched bacterial communities. Appl Environ Microbiol (2004) 1.16
Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction. BMC Microbiol (2012) 1.16
Respiratory nitrate ammonification by Shewanella oneidensis MR-1. J Bacteriol (2006) 1.15
Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils. Appl Environ Microbiol (2004) 1.14
Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications. Environ Sci Technol (2004) 1.14
Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae. BMC Genomics (2012) 1.14
Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA. ISME J (2009) 1.13
Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation. J Bacteriol (2006) 1.13
GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer. Environ Microbiol (2009) 1.13
Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration. Microb Biotechnol (2010) 1.13
Biogeography of two cold-adapted genera: Psychrobacter and Exiguobacterium. ISME J (2009) 1.11
Comparing the bacterial diversity of acute and chronic dental root canal infections. PLoS One (2011) 1.11
Novel 2,4-dichlorophenoxyacetic acid degradation genes from oligotrophic Bradyrhizobium sp. strain HW13 isolated from a pristine environment. J Bacteriol (2002) 1.11
Viability, diversity and composition of the bacterial community in a high Arctic permafrost soil from Spitsbergen, Northern Norway. Environ Microbiol (2007) 1.11