Published in Proc Natl Acad Sci U S A on January 17, 2012
Diverse and abundant antibiotic resistance genes in Chinese swine farms. Proc Natl Acad Sci U S A (2013) 2.48
Country-specific antibiotic use practices impact the human gut resistome. Genome Res (2013) 1.94
Early empiric antibiotic use in preterm infants is associated with lower bacterial diversity and higher relative abundance of Enterobacter. J Pediatr (2014) 1.87
Diverse antibiotic resistance genes in dairy cow manure. MBio (2014) 1.86
Human gut microbiota: repertoire and variations. Front Cell Infect Microbiol (2012) 1.69
Regulation of host weight gain and lipid metabolism by bacterial bile acid modification in the gut. Proc Natl Acad Sci U S A (2014) 1.50
Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin. Proc Natl Acad Sci U S A (2012) 1.43
Antibiotics and the gut microbiota. J Clin Invest (2014) 1.39
Transfer of multidrug-resistant bacteria between intermingled ecological niches: the interface between humans, animals and the environment. Int J Environ Res Public Health (2013) 1.30
An introduction to the analysis of shotgun metagenomic data. Front Plant Sci (2014) 1.27
The human microbiome as a reservoir of antimicrobial resistance. Front Microbiol (2013) 1.27
The gut is the epicentre of antibiotic resistance. Antimicrob Resist Infect Control (2012) 1.24
Antibiotic resistance shaping multi-level population biology of bacteria. Front Microbiol (2013) 1.22
A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community. Microbiome (2013) 1.17
Collateral effects of antibiotics on mammalian gut microbiomes. Gut Microbes (2012) 1.16
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution. ISME J (2014) 1.09
Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish. ISME J (2013) 1.06
Food and human gut as reservoirs of transferable antibiotic resistance encoding genes. Front Microbiol (2013) 1.04
Fecal microbial diversity in pre-weaned dairy calves as described by pyrosequencing of metagenomic 16S rDNA. Associations of Faecalibacterium species with health and growth. PLoS One (2013) 1.03
The dynamic distribution of porcine microbiota across different ages and gastrointestinal tract segments. PLoS One (2015) 1.03
Mobile genetic elements of the human gastrointestinal tract: potential for spread of antibiotic resistance genes. Gut Microbes (2013) 1.02
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes. ISME J (2015) 1.00
Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization. Proc Natl Acad Sci U S A (2014) 0.98
Antibiotic-Induced Changes in the Intestinal Microbiota and Disease. Trends Mol Med (2016) 0.94
Diet shapes the gut microbiome of pigs during nursing and weaning. Microbiome (2015) 0.94
Metagenomic profile of gut microbiota in children during cholera and recovery. Gut Pathog (2013) 0.94
In silico analysis of antibiotic resistance genes in the gut microflora of individuals from diverse geographies and age-groups. PLoS One (2013) 0.93
Carbadox has both temporary and lasting effects on the swine gut microbiota. Front Microbiol (2014) 0.91
The In-Feed Antibiotic Carbadox Induces Phage Gene Transcription in the Swine Gut Microbiome. MBio (2017) 0.88
Metagenomic insights into tetracycline effects on microbial community and antibiotic resistance of mouse gut. Ecotoxicology (2015) 0.88
Altered protozoan and bacterial communities and survival of Escherichia coli O157:H7 in monensin-treated wastewater from a dairy lagoon. PLoS One (2013) 0.87
Learning from agriculture: understanding low-dose antimicrobials as drivers of resistome expansion. Front Microbiol (2014) 0.87
Replenishing our defensive microbes. Bioessays (2013) 0.87
Effect of antimicrobial growth promoter administration on the intestinal microbiota of beef cattle. Gut Pathog (2013) 0.84
Insects represent a link between food animal farms and the urban environment for antibiotic resistance traits. Appl Environ Microbiol (2014) 0.84
In vitro continuous fermentation model (PolyFermS) of the swine proximal colon for simultaneous testing on the same gut microbiota. PLoS One (2014) 0.83
Dynamics of quinolone resistance in fecal Escherichia coli of finishing pigs after ciprofloxacin administration. J Vet Med Sci (2014) 0.83
Colonization Resistance of the Gut Microbiota against Clostridium difficile. Antibiotics (Basel) (2015) 0.82
Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture. MBio (2016) 0.81
In situ prebiotics for weaning piglets: in vitro production and fermentation of potato galacto-rhamnogalacturonan. Appl Environ Microbiol (2014) 0.81
The double life of antibiotics. Mo Med (2013) 0.81
Novel blaROB-1-bearing plasmid conferring resistance to β-lactams in Haemophilus parasuis isolates from healthy weaning pigs. Appl Environ Microbiol (2015) 0.81
Metagenomic Analysis of Chicken Gut Microbiota for Improving Metabolism and Health of Chickens - A Review. Asian-Australas J Anim Sci (2015) 0.80
Treating cattle with antibiotics affects greenhouse gas emissions, and microbiota in dung and dung beetles. Proc Biol Sci (2016) 0.80
Antimicrobial-induced DNA damage and genomic instability in microbial pathogens. PLoS Pathog (2015) 0.80
Study of the diversity and short-chain fatty acids production by the bacterial community in overweight and obese Mexican children. Eur J Clin Microbiol Infect Dis (2015) 0.80
Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness. Sci Rep (2016) 0.80
Characterization of the bile and gall bladder microbiota of healthy pigs. Microbiologyopen (2014) 0.80
Combination of metagenomics and culture-based methods to study the interaction between ochratoxin a and gut microbiota. Toxicol Sci (2014) 0.79
Molecular diversity of Bacteroidales in fecal and environmental samples and swine-associated subpopulations. Appl Environ Microbiol (2012) 0.79
Alterations in ileal mucosa bacteria related to diet complexity and growth performance in young pigs. PLoS One (2014) 0.79
Heavy Metal Induced Antibiotic Resistance in Bacterium LSJC7. Int J Mol Sci (2015) 0.78
Thirty-minute screening of antibiotic resistance genes in bacterial isolates with minimal sample preparation in static self-dispensing 64 and 384 assay cards. Appl Microbiol Biotechnol (2015) 0.78
Chicory (Cichorium intybus L.) and cereals differently affect gut development in broiler chickens and young pigs. J Anim Sci Biotechnol (2013) 0.78
Adverse consequences of neonatal antibiotic exposure. Curr Opin Pediatr (2016) 0.77
Development of aminoglycoside and β-lactamase resistance among intestinal microbiota of swine treated with lincomycin, chlortetracycline, and amoxicillin. Front Microbiol (2014) 0.77
Quantification of lincomycin resistance genes associated with lincomycin residues in waters and soils adjacent to representative swine farms in China. Front Microbiol (2013) 0.77
Spread of tetracycline resistance genes at a conventional dairy farm. Front Microbiol (2015) 0.77
Proteomics as the final step in the functional metagenomics study of antimicrobial resistance. Front Microbiol (2015) 0.77
Impact of the use of β-lactam antimicrobials on the emergence of Escherichia coli isolates resistant to cephalosporins under standard pig-rearing conditions. Appl Environ Microbiol (2014) 0.77
Differences in Microbiota Membership along the Gastrointestinal Tract of Piglets and Their Differential Alterations Following an Early-Life Antibiotic Intervention. Front Microbiol (2017) 0.77
Effects of oral florfenicol and azithromycin on gut microbiota and adipogenesis in mice. PLoS One (2017) 0.76
Changes in the Porcine Intestinal Microbiome in Response to Infection with Salmonella enterica and Lawsonia intracellularis. PLoS One (2015) 0.76
Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla). Microb Ecol (2016) 0.76
The microbiome - a new frontier of biology. Can Vet J (2012) 0.75
Selection of target mutation in rat gastrointestinal tract E. coli by minute dosage of enrofloxacin. Front Microbiol (2014) 0.75
Microbes can help explain the evolution of host altruism. Nat Commun (2017) 0.75
Architecture of Class 1, 2, and 3 Integrons from Gram Negative Bacteria Recovered among Fruits and Vegetables. Front Microbiol (2016) 0.75
Prevalence and Abundance of Florfenicol and Linezolid Resistance Genes in Soils Adjacent to Swine Feedlots. Sci Rep (2016) 0.75
Dietary grape seed proanthocyanidins (GSPs) improve weaned intestinal microbiota and mucosal barrier using a piglet model. Oncotarget (2016) 0.75
The effects of amoxicillin treatment of newborn piglets on the prevalence of hernias and abscesses, growth and ampicillin resistance of intestinal coliform bacteria in weaned pigs. PLoS One (2017) 0.75
The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome. ISME J (2016) 0.75
Oral administration of a select mixture of Bacillus probiotics affects the gut microbiota and goblet cell function in newly weaned MUC4 resistant pigs following Escherichia coli challenge. Appl Environ Microbiol (2016) 0.75
Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions. Front Microbiol (2016) 0.75
Detection of Airborne Methicillin-Resistant Staphylococcus aureus Inside and Downwind of a Swine Building, and in Animal Feed: Potential Occupational, Animal Health, and Environmental Implications. J Agromedicine (2016) 0.75
A diverse intrinsic antibiotic resistome from a cave bacterium. Nat Commun (2016) 0.75
Implementing drinking water feed additive strategies in post-weaning piglets, antibiotic reduction and performance impacts: case study. Porcine Health Manag (2016) 0.75
Microbial shifts in the porcine distal gut in response to diets supplemented with Enterococcus Faecalis as alternatives to antibiotics. Sci Rep (2017) 0.75
In Vivo Effects of Pichia Pastoris-Expressed Antimicrobial Peptide Hepcidin on the Community Composition and Metabolism Gut Microbiota of Rats. PLoS One (2016) 0.75
The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms. Front Microbiol (2017) 0.75
Functional Responses of Salt Marsh Microbial Communities to Long-Term Nutrient Enrichment. Appl Environ Microbiol (2016) 0.75
Housefly Larva Vermicomposting Efficiently Attenuates Antibiotic Resistance Genes in Swine Manure, with Concomitant Bacterial Population Changes. Appl Environ Microbiol (2015) 0.75
Gradual Changes of Gut Microbiota in Weaned Miniature Piglets. Front Microbiol (2016) 0.75
Exploring the cockatiel (Nymphicus hollandicus) fecal microbiome, bacterial inhabitants of a worldwide pet. PeerJ (2016) 0.75
Effect of antibiotics on bacterial populations: a multi-hierachical selection process. F1000Res (2017) 0.75
Safety Evaluation of Neo Transgenic Pigs by Studying Changes in Gut Microbiota Using High-Throughput Sequencing Technology. PLoS One (2016) 0.75
Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes. Ann N Y Acad Sci (2016) 0.75
Microbial Shifts in the Intestinal Microbiota of Salmonella Infected Chickens in Response to Enrofloxacin. Front Microbiol (2017) 0.75
Bacteria from Animals as a Pool of Antimicrobial Resistance Genes. Antibiotics (Basel) (2017) 0.75
Long-term effects of early antibiotic intervention on blood parameters, apparent nutrient digestibility, and fecal microbial fermentation profile in pigs with different dietary protein levels. J Anim Sci Biotechnol (2017) 0.75
The Maturing Development of Gut Microbiota in Commercial Piglets during the Weaning Transition. Front Microbiol (2017) 0.75
Meta-analysis To Define a Core Microbiota in the Swine Gut. mSystems (2017) 0.75
Ecological study on antimicrobial-resistant zoonotic bacteria transmitted by flies in cattle farms. Parasitol Res (2016) 0.75
Modulatory Influence of Segmented Filamentous Bacteria on Transcriptomic Response of Gnotobiotic Mice Exposed to TCDD. Front Microbiol (2017) 0.75
A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies. Front Microbiol (2017) 0.75
Effects of dietary supplementation with two alternatives to antibiotics on intestinal microbiota of preweaned calves challenged with Escherichia coli K99. Sci Rep (2017) 0.75
Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. J Environ Manage (2017) 0.75
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res (2008) 52.43
An obesity-associated gut microbiome with increased capacity for energy harvest. Nature (2006) 44.35
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol (2008) 16.57
Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol (2008) 12.16
ARDB--Antibiotic Resistance Genes Database. Nucleic Acids Res (2008) 7.82
Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci U S A (2006) 7.77
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect Immun (2009) 7.48
Multivariate dispersion as a measure of beta diversity. Ecol Lett (2006) 5.62
Functional characterization of the antibiotic resistance reservoir in the human microflora. Science (2009) 4.78
Call of the wild: antibiotic resistance genes in natural environments. Nat Rev Microbiol (2010) 4.22
Antibiotics and antibiotic resistance genes in natural environments. Science (2008) 3.77
Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon. Appl Environ Microbiol (2001) 3.56
ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics (2009) 3.17
Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes. Cold Spring Harb Protoc (2010) 2.74
Bacterial pili: molecular mechanisms of pathogenesis. Curr Opin Microbiol (2000) 2.43
Antibiotic growth promoters in agriculture: history and mode of action. Poult Sci (2005) 2.34
Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women. Br J Nutr (2010) 2.32
Why are antibiotic resistance genes so resistant to elimination? Antimicrob Agents Chemother (1997) 2.32
Reshaping the gut microbiome with bacterial transplantation and antibiotic intake. Genome Res (2010) 2.21
Detection and characterization of broad-host-range plasmids in environmental bacteria by PCR. Appl Environ Microbiol (1996) 2.14
Evidence for recent intergeneric transfer of a new tetracycline resistance gene, tet(W), isolated from Butyrivibrio fibrisolvens, and the occurrence of tet(O) in ruminal bacteria. Environ Microbiol (1999) 1.99
The role of natural environments in the evolution of resistance traits in pathogenic bacteria. Proc Biol Sci (2009) 1.94
Comparative fecal metagenomics unveils unique functional capacity of the swine gut. BMC Microbiol (2011) 1.89
Why and how antibiotics are used in swine production. Anim Biotechnol (2002) 1.84
A global view of antibiotic resistance. FEMS Microbiol Rev (2008) 1.83
Evidence of extensive interspecies transfer of integron-mediated antimicrobial resistance genes among multidrug-resistant Enterobacteriaceae in a clinical setting. J Infect Dis (2002) 1.72
Effect of antibiotic treatment on the intestinal metabolome. Antimicrob Agents Chemother (2011) 1.64
Novel tetracycline resistance gene, tet(32), in the Clostridium-related human colonic anaerobe K10 and its transmission in vitro to the rumen anaerobe Butyrivibrio fibrisolvens. Antimicrob Agents Chemother (2001) 1.59
What antimicrobial resistance has taught us about horizontal gene transfer. Methods Mol Biol (2009) 1.59
Isolation of tetracycline-resistant Megasphaera elsdenii strains with novel mosaic gene combinations of tet(O) and tet(W) from swine. Appl Environ Microbiol (2003) 1.58
Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J (2007) 1.41
The effects of antibiotic usage in food animals on the development of antimicrobial resistance of importance for humans in Campylobacter and Escherichia coli. Microbes Infect (1999) 1.36
Transfer of an ampicillin resistance gene between two Escherichia coli strains in the bowel microbiota of an infant treated with antibiotics. J Antimicrob Chemother (2007) 1.20
Antibiotics in agriculture: when is it time to close the barn door? Proc Natl Acad Sci U S A (2002) 1.13
Emergence of antibiotic-resistant bacteria in the intestinal flora of farm inhabitants. J Infect Dis (1978) 1.08
Molecular microbial ecology of the gastrointestinal tract: from phylogeny to function. Curr Issues Intest Microbiol (2004) 1.04
A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens. J Bacteriol (2007) 1.02
Molecular mechanisms for transposition of drug-resistance genes and other movable genetic elements. Rev Infect Dis (1987) 1.01
Tetracycline resistance associated with commensal bacteria from representative ready-to-consume deli and restaurant foods. J Food Prot (2010) 0.96
Metronidazole effects on microbiota and mucus layer thickness in the rat gut. FEMS Microbiol Ecol (2010) 0.95
Chlortetracycline-resistant intestinal bacteria in organically raised and feral Swine. Appl Environ Microbiol (2011) 0.94
Escherichia coli, enterococci, and Bacteroides thetaiotaomicron qPCR signals through wastewater and septage treatment. Water Res (2011) 0.92
Development and experimental validation of a predictive threshold cycle equation for quantification of virulence and marker genes by high-throughput nanoliter-volume PCR on the OpenArray platform. Appl Environ Microbiol (2008) 0.92
Persistence of antibiotic resistance: evaluation of a probiotic approach using antibiotic-sensitive Megasphaera elsdenii strains to prevent colonization of swine by antibiotic-resistant strains. Appl Environ Microbiol (2011) 0.91
Distribution of the ermG gene among bacterial isolates from porcine intestinal contents. Appl Environ Microbiol (2005) 0.86
Antimicrobial treatment reduces intestinal microflora and improves protein digestive capacity without changes in villous structure in weanling pigs. Br J Nutr (2007) 0.84
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol (2007) 60.97
DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community. Appl Environ Microbiol (1988) 13.80
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol (2007) 12.76
Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A (2005) 9.63
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res (2013) 6.36
Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res (2004) 4.97
The bacterial species definition in the genomic era. Philos Trans R Soc Lond B Biol Sci (2006) 4.47
Towards environmental systems biology of Shewanella. Nat Rev Microbiol (2008) 4.37
Towards a genome-based taxonomy for prokaryotes. J Bacteriol (2005) 4.18
Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Res (2010) 4.17
The Genomic Standards Consortium. PLoS Biol (2011) 3.99
Trends between gene content and genome size in prokaryotic species with larger genomes. Proc Natl Acad Sci U S A (2004) 3.89
Dechlorination of Four Commercial Polychlorinated Biphenyl Mixtures (Aroclors) by Anaerobic Microorganisms from Sediments. Appl Environ Microbiol (1990) 3.46
Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing. Proc Natl Acad Sci U S A (2009) 3.16
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs. Proc Natl Acad Sci U S A (2012) 3.10
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc Natl Acad Sci U S A (2006) 3.07
Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis. J Bacteriol (2005) 3.05
Spatial and resource factors influencing high microbial diversity in soil. Appl Environ Microbiol (2002) 2.99
An epidemiological investigation of a sustained high rate of pediatric parapneumonic empyema: risk factors and microbiological associations. Clin Infect Dis (2002) 2.94
Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution. Microb Ecol (2007) 2.78
Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proc Natl Acad Sci U S A (2007) 2.78
Genome reduction in Leptospira borgpetersenii reflects limited transmission potential. Proc Natl Acad Sci U S A (2006) 2.71
Tackling soil diversity with the assembly of large, complex metagenomes. Proc Natl Acad Sci U S A (2014) 2.65
Diverse and abundant antibiotic resistance genes in Chinese swine farms. Proc Natl Acad Sci U S A (2013) 2.48
Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer. J Bacteriol (2004) 2.28
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc Natl Acad Sci U S A (2011) 2.21
Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress. Appl Environ Microbiol (2002) 2.14
Toward a standards-compliant genomic and metagenomic publication record. OMICS (2008) 2.11
Toward a more robust assessment of intraspecies diversity, using fewer genetic markers. Appl Environ Microbiol (2006) 2.07
Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium. Appl Environ Microbiol (2002) 2.02
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proc Natl Acad Sci U S A (2005) 1.93
The Exiguobacterium genus: biodiversity and biogeography. Extremophiles (2009) 1.91
Hybrid tet genes and tet gene nomenclature: request for opinion. Antimicrob Agents Chemother (2005) 1.86
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol (2007) 1.83
Cryptic lineages of the genus Escherichia. Appl Environ Microbiol (2009) 1.81
FunGene: the functional gene pipeline and repository. Front Microbiol (2013) 1.80
Microbial dehalorespiration with 1,1,1-trichloroethane. Science (2002) 1.75
RNAcentral: A vision for an international database of RNA sequences. RNA (2011) 1.73
Assessment of bias associated with incomplete extraction of microbial DNA from soil. Appl Environ Microbiol (2009) 1.73
Changes in land use alter the structure of bacterial communities in Western Amazon soils. ISME J (2009) 1.72
Antibiotics in feed induce prophages in swine fecal microbiomes. MBio (2011) 1.72
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME J (2010) 1.71
Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Appl Environ Microbiol (2002) 1.68
Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica. ISME J (2010) 1.66
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering. Proc Natl Acad Sci U S A (2011) 1.63
Species abundance and diversity of Burkholderia cepacia complex in the environment. Appl Environ Microbiol (2005) 1.62
Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities. Proc Natl Acad Sci U S A (2012) 1.54
Bacterial community in ancient Siberian permafrost as characterized by culture and culture-independent methods. Astrobiology (2006) 1.53
Gene-Z: a device for point of care genetic testing using a smartphone. Lab Chip (2012) 1.52
Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400T and relatives as Burkholderia xenovorans sp. nov. Int J Syst Evol Microbiol (2004) 1.50
Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. Environ Microbiol (2003) 1.49
The contribution of cytolethal distending toxin to bacterial pathogenesis. Crit Rev Microbiol (2006) 1.49
Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008. J Gen Virol (2010) 1.48
Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors. OMICS (2002) 1.48
Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proc Natl Acad Sci U S A (2009) 1.47
Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data. MBio (2014) 1.46
Experimental canine leptospirosis caused by Leptospira interrogans serovars pomona and bratislava. Am J Vet Res (2005) 1.46
The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth. Appl Environ Microbiol (2010) 1.44
Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach. BMC Genomics (2008) 1.43
Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico. Appl Environ Microbiol (2003) 1.43
Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J (2007) 1.41
Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. Int J Syst Evol Microbiol (2002) 1.40
Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Appl Environ Microbiol (2005) 1.37
Identification and molecular cloning of a novel porcine parvovirus. Arch Virol (2010) 1.34
Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria and their description as Desulfuromonas michiganensis sp. nov. Appl Environ Microbiol (2003) 1.33
Quantitative detection of microbial genes by using DNA microarrays. Appl Environ Microbiol (2002) 1.32
Shewanella--the environmentally versatile genome. Nat Biotechnol (2002) 1.32
Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. Extremophiles (2006) 1.31
Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME J (2009) 1.31
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proc Natl Acad Sci U S A (2014) 1.31
Comparison of the cecal microbiota of domestic and wild turkeys. Microb Ecol (2008) 1.29
Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments. Appl Environ Microbiol (2006) 1.28
Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool. MBio (2013) 1.28
On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes. Nucleic Acids Res (2006) 1.27
Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. Int J Syst Evol Microbiol (2006) 1.27
Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 viruses isolated in 2010-2011. J Virol (2012) 1.26
Estimating population diversity with CatchAll. Bioinformatics (2012) 1.26
Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico. Appl Environ Microbiol (2008) 1.25
Precursor and temperature modulation of fatty acid composition and growth of Listeria monocytogenes cold-sensitive mutants with transposon-interrupted branched-chain alpha-keto acid dehydrogenase. Microbiology (2005) 1.24