PubRank

Yasukazu Nakamura

Author PubWeight™ 94.47‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 DDBJ launches a new archive database with analytical tools for next-generation sequence data. Nucleic Acids Res 2009 5.89
2 Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases. Nature 2003 5.48
3 Genome structure of the legume, Lotus japonicus. DNA Res 2008 4.93
4 The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res 2010 4.90
5 Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res 2002 4.65
6 The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res 2011 4.34
7 DDBJ progress report. Nucleic Acids Res 2010 3.34
8 The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments. Nucleic Acids Res 2011 3.05
9 Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843. DNA Res 2008 2.31
10 Characterization of the soybean genome using EST-derived microsatellite markers. DNA Res 2008 2.25
11 A large-scale protein protein interaction analysis in Synechocystis sp. PCC6803. DNA Res 2007 1.93
12 A nucleoporin is required for induction of Ca2+ spiking in legume nodule development and essential for rhizobial and fungal symbiosis. Proc Natl Acad Sci U S A 2006 1.85
13 Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.). DNA Res 2006 1.79
14 CyanoBase: the cyanobacteria genome database update 2010. Nucleic Acids Res 2009 1.62
15 Gain-of-function phenotypes of chemically synthetic CLAVATA3/ESR-related (CLE) peptides in Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol 2007 1.60
16 DDBJ new system and service refactoring. Nucleic Acids Res 2012 1.54
17 The genomic standards consortium: bringing standards to life for microbial ecology. ISME J 2011 1.52
18 Expression profiling-based identification of CO2-responsive genes regulated by CCM1 controlling a carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol 2004 1.49
19 DDBJ progress report: a new submission system for leading to a correct annotation. Nucleic Acids Res 2013 1.43
20 The sulfate transporter SST1 is crucial for symbiotic nitrogen fixation in Lotus japonicus root nodules. Plant Cell 2005 1.38
21 SNP discovery and linkage map construction in cultivated tomato. DNA Res 2010 1.36
22 An interspecific linkage map of SSR and intronic polymorphism markers in tomato. Theor Appl Genet 2010 1.36
23 Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies. Adv Exp Med Biol 2010 1.34
24 Development of a bacterial cell enrichment method and its application to the community analysis in soybean stems. Microb Ecol 2009 1.30
25 Structural analysis of four large plasmids harboring in a unicellular cyanobacterium, Synechocystis sp. PCC 6803. DNA Res 2003 1.30
26 DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data. DNA Res 2013 1.24
27 Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome. EMBO J 2010 1.23
28 Complete genomic structure of the cultivated rice endophyte Azospirillum sp. B510. DNA Res 2010 1.22
29 CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes. Nucleic Acids Res 2013 1.20
30 A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium Mesorhizobium loti. DNA Res 2008 1.20
31 Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs. Microbes Environ 2012 1.19
32 Structural analysis of a Lotus japonicus genome. V. Sequence features and mapping of sixty-four TAC clones which cover the 6.4 mb regions of the genome. DNA Res 2003 1.16
33 Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 (supplement). DNA Res 2002 1.13
34 A cluster of genes encodes the two types of chalcone isomerase involved in the biosynthesis of general flavonoids and legume-specific 5-deoxy(iso)flavonoids in Lotus japonicus. Plant Physiol 2003 1.08
35 Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis. Plant Mol Biol 2004 1.08
36 Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis. DNA Res 2004 1.06
37 Comparison of the transcript profiles from the root and the nodulating root of the model legume Lotus japonicus by serial analysis of gene expression. Mol Plant Microbe Interact 2005 1.06
38 Genome sequencing and genome resources in model legumes. Plant Physiol 2007 1.04
39 Structural analysis of a Lotus japonicus genome. IV. Sequence features and mapping of seventy-three TAC clones which cover the 7.5 mb regions of the genome. DNA Res 2003 1.04
40 The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*. J Biomed Semantics 2010 1.04
41 Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family. DNA Res 2006 1.04
42 Genome-wide analyses of the structural gene families involved in the legume-specific 5-deoxyisoflavonoid biosynthesis of Lotus japonicus. DNA Res 2007 1.00
43 Host plant genome overcomes the lack of a bacterial gene for symbiotic nitrogen fixation. Nature 2009 1.00
44 The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J Biomed Semantics 2011 0.99
45 Structural analysis of a Lotus japonicus genome. III. Sequence features and mapping of sixty-two TAC clones which cover the 6.7 Mb regions of the genome. DNA Res 2003 0.97
46 Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum). Plant Cell Physiol 2013 0.95
47 Construction of signature-tagged mutant library in Mesorhizobium loti as a powerful tool for functional genomics. DNA Res 2008 0.88
48 The integral membrane protein SEN1 is required for symbiotic nitrogen fixation in Lotus japonicus nodules. Plant Cell Physiol 2011 0.88
49 Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases. Plant Cell Physiol 2013 0.86
50 Activation tagging approach in a model legume, Lotus japonicus. J Plant Res 2005 0.84
51 H2DB: a heritability database across multiple species by annotating trait-associated genomic loci. Nucleic Acids Res 2012 0.83
52 SABRE2: a database connecting plant EST/full-length cDNA clones with Arabidopsis information. Plant Cell Physiol 2013 0.80
53 Promoter trapping in Lotus japonicus reveals novel root and nodule GUS expression domains. Plant Cell Physiol 2005 0.80
54 Mudi, a web tool for identifying mutations by bioinformatics analysis of whole-genome sequence. Genes Cells 2014 0.79
55 [System for expressed sequence tags (EST) analysis]. Tanpakushitsu Kakusan Koso 2004 0.79
56 Commonalities and differences among symbiosis islands of three Mesorhizobium loti strains. Microbes Environ 2013 0.79
57 Analysis of gene expression in Arabidopsis thaliana by array hybridization with genomic DNA fragments aligned along chromosomal regions. Plant J 2002 0.77
58 Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010. Stand Genomic Sci 2010 0.76
59 [Strategies for structural anaysis of genomes]. Tanpakushitsu Kakusan Koso 2004 0.75
60 [The model legume Lotus japonicus]. Tanpakushitsu Kakusan Koso 2002 0.75
61 [Genome analysis and resource development of Lotus japonicus]. Tanpakushitsu Kakusan Koso 2006 0.75