Published in DNA Res on December 31, 2002
Infection and invasion of roots by symbiotic, nitrogen-fixing rhizobia during nodulation of temperate legumes. Microbiol Mol Biol Rev (2004) 3.14
The genome of Rhizobium leguminosarum has recognizable core and accessory components. Genome Biol (2006) 2.93
The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons. Proc Natl Acad Sci U S A (2006) 2.44
The net of life: reconstructing the microbial phylogenetic network. Genome Res (2005) 2.31
Symbiotic use of pathogenic strategies: rhizobial protein secretion systems. Nat Rev Microbiol (2009) 2.14
Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems. Appl Environ Microbiol (2009) 2.07
Structure of trichamide, a cyclic peptide from the bloom-forming cyanobacterium Trichodesmium erythraeum, predicted from the genome sequence. Appl Environ Microbiol (2006) 2.07
Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria. J Bacteriol (2009) 1.96
Computational inference of scenarios for alpha-proteobacterial genome evolution. Proc Natl Acad Sci U S A (2004) 1.77
Detection of and response to signals involved in host-microbe interactions by plant-associated bacteria. Microbiol Mol Biol Rev (2005) 1.74
Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires. Nat Genet (2016) 1.73
Molecular evolution of FtsZ protein sequences encoded within the genomes of archaea, bacteria, and eukaryota. J Mol Evol (2004) 1.65
Novel type IV secretion system involved in propagation of genomic islands. J Bacteriol (2006) 1.64
Identification and characterization of the furfural and 5-(hydroxymethyl)furfural degradation pathways of Cupriavidus basilensis HMF14. Proc Natl Acad Sci U S A (2010) 1.63
Mapping the Sinorhizobium meliloti 1021 solute-binding protein-dependent transportome. Proc Natl Acad Sci U S A (2006) 1.61
The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism. J Bacteriol (2006) 1.61
Predicting Shine-Dalgarno sequence locations exposes genome annotation errors. PLoS Comput Biol (2006) 1.55
The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments. Genome Biol (2003) 1.54
Genome sequence and comparative genome analysis of Lactobacillus casei: insights into their niche-associated evolution. Genome Biol Evol (2009) 1.51
Bradyrhizobium japonicum senses iron through the status of haem to regulate iron homeostasis and metabolism. Mol Microbiol (2006) 1.45
Expression islands clustered on the symbiosis island of the Mesorhizobium loti genome. J Bacteriol (2004) 1.39
Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress. J Bacteriol (2007) 1.29
Phylogenomics and signature proteins for the alpha proteobacteria and its main groups. BMC Microbiol (2007) 1.28
Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases. Appl Environ Microbiol (2006) 1.28
The Iron control element, acting in positive and negative control of iron-regulated Bradyrhizobium japonicum genes, is a target for the Irr protein. J Bacteriol (2006) 1.27
Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T. Genes (Basel) (2011) 1.26
The type III Secretion System of Bradyrhizobium japonicum USDA122 mediates symbiotic incompatibility with Rj2 soybean plants. Appl Environ Microbiol (2012) 1.22
A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium Mesorhizobium loti. DNA Res (2008) 1.20
Variability in Bradyrhizobium japonicum and B. elkanii seven years after introduction of both the exotic microsymbiont and the soybean host in a cerrados soil. Microb Ecol (2007) 1.20
Genomes of the symbiotic nitrogen-fixing bacteria of legumes. Plant Physiol (2007) 1.20
Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs. Microbes Environ (2012) 1.19
Bradyrhizobium japonicum NnrR, a denitrification regulator, expands the FixLJ-FixK2 regulatory cascade. J Bacteriol (2003) 1.18
OXA-60, a chromosomal, inducible, and imipenem-hydrolyzing class D beta-lactamase from Ralstonia pickettii. Antimicrob Agents Chemother (2004) 1.17
Isovaleryl-homoserine lactone, an unusual branched-chain quorum-sensing signal from the soybean symbiont Bradyrhizobium japonicum. Proc Natl Acad Sci U S A (2011) 1.17
Dissection of the Bradyrhizobium japonicum NifA+sigma54 regulon, and identification of a ferredoxin gene (fdxN) for symbiotic nitrogen fixation. Mol Genet Genomics (2007) 1.15
Symbiotic Bradyrhizobium japonicum reduces N2O surrounding the soybean root system via nitrous oxide reductase. Appl Environ Microbiol (2006) 1.14
European origin of Bradyrhizobium populations infecting lupins and serradella in soils of Western Australia and South Africa. Appl Environ Microbiol (2005) 1.14
T3DB: an integrated database for bacterial type III secretion system. BMC Bioinformatics (2012) 1.12
Transcriptomic analysis of Rhizobium leguminosarum biovar viciae in symbiosis with host plants Pisum sativum and Vicia cracca. J Bacteriol (2009) 1.12
Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean. BMC Genomics (2014) 1.11
Characterization of two sets of subpolar flagella in Bradyrhizobium japonicum. J Bacteriol (2006) 1.11
Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities. Appl Environ Microbiol (2005) 1.10
Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales. BMC Evol Biol (2005) 1.09
Integrated analysis of transcriptomic and proteomic data. Curr Genomics (2013) 1.09
Whole-genome transcriptional profiling of Bradyrhizobium japonicum during chemoautotrophic growth. J Bacteriol (2008) 1.09
Differentiation of regions with atypical oligonucleotide composition in bacterial genomes. BMC Bioinformatics (2005) 1.08
N(2)O emission from degraded soybean nodules depends on denitrification by Bradyrhizobium japonicum and other microbes in the rhizosphere. Microbes Environ (2012) 1.07
Trehalose biosynthesis in Rhizobium leguminosarum bv. trifolii and its role in desiccation tolerance. Appl Environ Microbiol (2007) 1.06
Characterization of a bifunctional PutA homologue from Bradyrhizobium japonicum and identification of an active site residue that modulates proline reduction of the flavin adenine dinucleotide cofactor. Biochemistry (2005) 1.06
Comprehensive assessment of the regulons controlled by the FixLJ-FixK2-FixK1 cascade in Bradyrhizobium japonicum. J Bacteriol (2008) 1.06
Postgenomic scan of metallo-beta-lactamase homologues in rhizobacteria: identification and characterization of BJP-1, a subclass B3 ortholog from Bradyrhizobium japonicum. Antimicrob Agents Chemother (2006) 1.05
An evolutionary hot spot: the pNGR234b replicon of Rhizobium sp. strain NGR234. J Bacteriol (2004) 1.04
Thiosulfate-dependent chemolithoautotrophic growth of Bradyrhizobium japonicum. Appl Environ Microbiol (2010) 1.04
Isolation of poly-3-hydroxybutyrate metabolism genes from complex microbial communities by phenotypic complementation of bacterial mutants. Appl Environ Microbiol (2006) 1.03
KatG is the primary detoxifier of hydrogen peroxide produced by aerobic metabolism in Bradyrhizobium japonicum. J Bacteriol (2004) 1.02
Diversification of DNA sequences in the symbiotic genome of Rhizobium etli. J Bacteriol (2005) 1.02
Draft genome sequence of the nitrogen-fixing symbiotic bacterium Bradyrhizobium elkanii 587. J Bacteriol (2012) 1.02
Positive control of ferric siderophore receptor gene expression by the Irr protein in Bradyrhizobium japonicum. J Bacteriol (2008) 1.01
Diversification of lupine Bradyrhizobium strains: evidence from nodulation gene trees. Appl Environ Microbiol (2007) 1.00
Characterization of the beta-ketoadipate pathway in Sinorhizobium meliloti. Appl Environ Microbiol (2006) 1.00
Evidence of horizontal transfer of symbiotic genes from a Bradyrhizobium japonicum inoculant strain to indigenous diazotrophs Sinorhizobium (Ensifer) fredii and Bradyrhizobium elkanii in a Brazilian Savannah soil. Appl Environ Microbiol (2007) 1.00
Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.). BMC Genomics (2012) 1.00
New method of denitrification analysis of bradyrhizobium field isolates by gas chromatographic determination of (15)N-labeled N(2). Appl Environ Microbiol (2004) 1.00
Convergence of the transcriptional responses to heat shock and singlet oxygen stresses. PLoS Genet (2012) 0.98
Design and validation of a partial-genome microarray for transcriptional profiling of the Bradyrhizobium japonicum symbiotic gene region. Mol Genet Genomics (2005) 0.98
Pathway of gamma-aminobutyrate metabolism in Rhizobium leguminosarum 3841 and its role in symbiosis. J Bacteriol (2009) 0.98
Characterization of NopP, a type III secreted effector of Rhizobium sp. strain NGR234. J Bacteriol (2004) 0.98
New target genes controlled by the Bradyrhizobium japonicum two-component regulatory system RegSR. J Bacteriol (2007) 0.98
Cloning and expression of afpA, a gene encoding an antifreeze protein from the arctic plant growth-promoting rhizobacterium Pseudomonas putida GR12-2. J Bacteriol (2004) 0.98
Only one of five groEL genes is required for viability and successful symbiosis in Sinorhizobium meliloti. J Bacteriol (2006) 0.95
High-resolution crystal structure of the subclass B3 metallo-beta-lactamase BJP-1: rational basis for substrate specificity and interaction with sulfonamides. Antimicrob Agents Chemother (2010) 0.95
Evolution and multifarious horizontal transfer of an alternative biosynthetic pathway for the alternative polyamine sym-homospermidine. J Biol Chem (2010) 0.95
Functional conservation of the capacity for ent-kaurene biosynthesis and an associated operon in certain rhizobia. J Bacteriol (2013) 0.95
Bacterial outer membrane channel for divalent metal ion acquisition. Proc Natl Acad Sci U S A (2011) 0.95
Evolutionary instability of symbiotic function in Bradyrhizobium japonicum. PLoS One (2011) 0.94
Functional role of Bradyrhizobium japonicum trehalose biosynthesis and metabolism genes during physiological stress and nodulation. Appl Environ Microbiol (2009) 0.94
Isolation of novel Afipia septicemium and identification of previously unknown bacteria Bradyrhizobium sp. OHSU_III from blood of patients with poorly defined illnesses. PLoS One (2013) 0.94
Identification of functional mob regions in Rhizobium etli: evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d. J Bacteriol (2004) 0.94
Evolutionary dynamics of insertion sequences in relation to the evolutionary histories of the chromosome and symbiotic plasmid genes of Rhizobium etli populations. Appl Environ Microbiol (2010) 0.94
Comparative genomic analysis of N2-fixing and non-N2-fixing Paenibacillus spp.: organization, evolution and expression of the nitrogen fixation genes. PLoS Genet (2014) 0.94
Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline. Mol Cell Proteomics (2013) 0.94
Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus. ISME J (2013) 0.94
Bioinformatic approaches reveal metagenomic characterization of soil microbial community. PLoS One (2014) 0.93
Role of potassium uptake systems in Sinorhizobium meliloti osmoadaptation and symbiotic performance. J Bacteriol (2009) 0.93
Genome analysis suggests that the soil oligotrophic bacterium Agromonas oligotrophica (Bradyrhizobium oligotrophicum) is a nitrogen-fixing symbiont of Aeschynomene indica. Appl Environ Microbiol (2013) 0.93
Signature proteins that are distinctive of alpha proteobacteria. BMC Genomics (2005) 0.92
The spread of Bradyrhizobium lineages across host legume clades: from Abarema to Zygia. Microb Ecol (2014) 0.92
Cloning, solubilization, and characterization of squalene synthase from Thermosynechococcus elongatus BP-1. J Bacteriol (2008) 0.92
Microevolution of symbiotic Bradyrhizobium populations associated with soybeans in east North America. Ecol Evol (2012) 0.92
An adenylyl cyclase, CyaB, acts as an osmosensor in Myxococcus xanthus. J Bacteriol (2005) 0.92
Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria. Front Plant Sci (2014) 0.92
Selective enrichment and sequencing of whole mitochondrial genomes in the presence of nuclear encoded mitochondrial pseudogenes (numts). PLoS One (2012) 0.91
Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5. BMC Genomics (2010) 0.90
A novel gene cluster soxSRT is essential for the chemolithotrophic oxidation of thiosulfate and tetrathionate by Pseudaminobacter salicylatoxidans KCT001. Curr Microbiol (2006) 0.89
The genistein stimulon of Bradyrhizobium japonicum. Mol Genet Genomics (2008) 0.89
The Bradyrhizobium japonicum Fur protein is an iron-responsive regulator in vivo. Mol Genet Genomics (2006) 0.89
Symbiosis island shuffling with abundant insertion sequences in the genomes of extra-slow-growing strains of soybean bradyrhizobia. Appl Environ Microbiol (2015) 0.89
Construction of signature-tagged mutant library in Mesorhizobium loti as a powerful tool for functional genomics. DNA Res (2008) 0.88
The NifA-RpoN regulon of Mesorhizobium loti strain R7A and its symbiotic activation by a novel LacI/GalR-family regulator. PLoS One (2013) 0.87
Soybean seed extracts preferentially express genomic loci of Bradyrhizobium japonicum in the initial interaction with soybean, Glycine max (L.) Merr. DNA Res (2008) 0.87
The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23
DDBJ launches a new archive database with analytical tools for next-generation sequence data. Nucleic Acids Res (2009) 5.89
Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases. Nature (2003) 5.48
Genome structure of the legume, Lotus japonicus. DNA Res (2008) 4.93
The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res (2010) 4.90
A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals. Nature (2003) 4.47
The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res (2011) 4.34
A plant receptor-like kinase required for both bacterial and fungal symbiosis. Nature (2002) 4.29
In planta functions of the Arabidopsis cytokinin receptor family. Proc Natl Acad Sci U S A (2004) 3.47
Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol (2002) 3.47
DDBJ progress report. Nucleic Acids Res (2010) 3.34
Histidine kinase homologs that act as cytokinin receptors possess overlapping functions in the regulation of shoot and root growth in Arabidopsis. Plant Cell (2004) 3.24
Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy. Plant Cell (2004) 3.17
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments. Nucleic Acids Res (2011) 3.05
Shoot control of root development and nodulation is mediated by a receptor-like kinase. Nature (2002) 3.04
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci U S A (2006) 2.61
Sequencing the genespaces of Medicago truncatula and Lotus japonicus. Plant Physiol (2005) 2.60
A cytokinin perception mutant colonized by Rhizobium in the absence of nodule organogenesis. Science (2006) 2.59
Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. DNA Res (2002) 2.56
A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis. Science (2006) 2.55
Plant peptides govern terminal differentiation of bacteria in symbiosis. Science (2010) 2.43
Map-based cloning of the gene associated with the soybean maturity locus E3. Genetics (2009) 2.42
Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis. Proc Natl Acad Sci U S A (2006) 2.36
Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843. DNA Res (2008) 2.31
Eukaryotic control on bacterial cell cycle and differentiation in the Rhizobium-legume symbiosis. Proc Natl Acad Sci U S A (2006) 2.29
Characterization of the soybean genome using EST-derived microsatellite markers. DNA Res (2008) 2.25
Deregulation of a Ca2+/calmodulin-dependent kinase leads to spontaneous nodule development. Nature (2006) 2.24
High-density integrated linkage map based on SSR markers in soybean. DNA Res (2009) 2.23
A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering. Genetics (2011) 2.22
Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA Res (2010) 2.19
Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering. Proc Natl Acad Sci U S A (2012) 2.11
Archaeal-type rhodopsins in Chlamydomonas: model structure and intracellular localization. Biochem Biophys Res Commun (2003) 2.09
An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes. BMC Genomics (2009) 2.02
Plastid proteins crucial for symbiotic fungal and bacterial entry into plant roots. Nature (2004) 1.94
A large-scale protein protein interaction analysis in Synechocystis sp. PCC6803. DNA Res (2007) 1.93
Nod factor/nitrate-induced CLE genes that drive HAR1-mediated systemic regulation of nodulation. Plant Cell Physiol (2008) 1.92
Cell-to-cell movement of the CAPRICE protein in Arabidopsis root epidermal cell differentiation. Development (2005) 1.91
Arabidopsis plasma membrane protein crucial for Ca2+ influx and touch sensing in roots. Proc Natl Acad Sci U S A (2007) 1.86
Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii. Plant Physiol (2002) 1.86
A nucleoporin is required for induction of Ca2+ spiking in legume nodule development and essential for rhizobial and fungal symbiosis. Proc Natl Acad Sci U S A (2006) 1.85
Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library. DNA Res (2008) 1.82