Published in Proc AMIA Symp on January 01, 2002
The compositional structure of Gene Ontology terms. Pac Symp Biocomput (2004) 4.22
Interface terminologies: facilitating direct entry of clinical data into electronic health record systems. J Am Med Inform Assoc (2006) 3.76
Mining protein function from text using term-based support vector machines. BMC Bioinformatics (2005) 2.36
Mapping the gene ontology into the unified medical language system. Comp Funct Genomics (2004) 1.68
Linking biomedical language information and knowledge resources: GO and UMLS. Pac Symp Biocomput (2003) 1.66
A sentence sliding window approach to extract protein annotations from biomedical articles. BMC Bioinformatics (2005) 1.59
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. BMC Bioinformatics (2014) 1.52
How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience. Database (Oxford) (2012) 1.23
Rewriting and suppressing UMLS terms for improved biomedical term identification. J Biomed Semantics (2010) 1.14
War of ontology worlds: mathematics, computer code, or Esperanto? PLoS Comput Biol (2011) 0.84
Translational systems genomics: ontology and imaging. Summit on Translat Bioinforma (2009) 0.79
Creating the gene ontology resource: design and implementation. Genome Res (2001) 55.73
Ontology-based knowledge representation for bioinformatics. Brief Bioinform (2000) 11.63
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res (2002) 10.65
Evaluating UMLS strings for natural language processing. Proc AMIA Symp (2001) 2.97
The nature of lexical knowledge. Methods Inf Med (1998) 2.14
How knowledge drives understanding--matching medical ontologies with the needs of medical language processing. Artif Intell Med (1999) 1.75
A knowledge model for analysis and simulation of regulatory networks. Bioinformatics (2000) 1.31
Advancing translational research with the Semantic Web. BMC Bioinformatics (2007) 4.38
Identifying consumer-friendly display (CFD) names for health concepts. AMIA Annu Symp Proc (2005) 2.98
Aligning representations of anatomy using lexical and structural methods. AMIA Annu Symp Proc (2003) 2.82
Law and order: assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy. Comput Biol Med (2005) 2.35
Utilizing the UMLS for semantic mapping between terminologies. AMIA Annu Symp Proc (2005) 1.95
Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference. AMIA Annu Symp Proc (2005) 1.80
Methods for managing variation in clinical drug names. AMIA Annu Symp Proc (2010) 1.76
The foundational model of anatomy in OWL: Experience and perspectives. Web Semant (2006) 1.71
Experience in reasoning with the foundational model of anatomy in OWL DL. Pac Symp Biocomput (2006) 1.63
Experience in Aligning Anatomical Ontologies. Int J Semant Web Inf Syst (2007) 1.62
Approaches to eliminating cycles in the UMLS Metathesaurus: naïve vs. formal. AMIA Annu Symp Proc (2005) 1.55
RxNav: a web service for standard drug information. AMIA Annu Symp Proc (2006) 1.53
An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence. J Biomed Inform (2008) 1.50
Large-scale, Exhaustive Lattice-based Structural Auditing of SNOMED CT. AMIA Annu Symp Proc (2010) 1.47
The pattern of name tokens in narrative clinical text and a comparison of five systems for redacting them. J Am Med Inform Assoc (2013) 1.38
The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. J Biomed Semantics (2011) 1.37
Global similarity and local divergence in human and mouse gene co-expression networks. BMC Evol Biol (2006) 1.32
Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. Bioinformatics (2010) 1.32
Using WordNet to improve the mapping of data elements to UMLS for data sources integration. AMIA Annu Symp Proc (2006) 1.32
Combining lexical and semantic methods of inter-terminology mapping using the UMLS. Stud Health Technol Inform (2007) 1.30
Consumer health information seeking as hypothesis testing. J Am Med Inform Assoc (2008) 1.30
Term identification methods for consumer health vocabulary development. J Med Internet Res (2007) 1.30
Using the RxNorm web services API for quality assurance prposes. AMIA Annu Symp Proc (2008) 1.21
Mapping data elements to terminological resources for integrating biomedical data sources. BMC Bioinformatics (2006) 1.21
Alignment of the UMLS semantic network with BioTop: methodology and assessment. Bioinformatics (2009) 1.20
Using the abstraction network in complement to description logics for quality assurance in biomedical terminologies - a case study in SNOMED CT. Stud Health Technol Inform (2010) 1.19
A unified framework for managing provenance information in translational research. BMC Bioinformatics (2011) 1.19
Lessons learned from cross-validating alignments between large anatomical ontologies. Stud Health Technol Inform (2007) 1.16
Consumer health concepts that do not map to the UMLS: where do they fit? J Am Med Inform Assoc (2008) 1.15
Extracting Rx information from clinical narrative. J Am Med Inform Assoc (2010) 1.14
A framework for characterizing drug information sources. AMIA Annu Symp Proc (2008) 1.09
Genestrace: phenomic knowledge discovery via structured terminology. Pac Symp Biocomput (2005) 1.09
Journal descriptor indexing tool for categorizing text according to discipline or semantic type. AMIA Annu Symp Proc (2006) 1.09
Comparing associative relationships among equivalent concepts across ontologies. Stud Health Technol Inform (2004) 1.08
The caBIG terminology review process. J Biomed Inform (2008) 1.08
dTagger: a POS tagger. AMIA Annu Symp Proc (2006) 1.07
Besides precision & recall: exploring alternative approaches to evaluating an automatic indexing tool for MEDLINE. AMIA Annu Symp Proc (2006) 1.07
Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. J Am Med Inform Assoc (2010) 1.05
Aspects of the Taxonomic Relation in the Biomedical Domain. Form Ontol Inf Syst (2001) 1.02
Classifying diseases with respect to anatomy: a study in SNOMED CT. AMIA Annu Symp Proc (2005) 1.01
MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and Its Application to SNOMED CT. Proc IEEE Int Conf Big Data (2014) 0.99
Analyzing polysemous concepts from a clinical perspective: application to auditing concept categorization in the UMLS. J Biomed Inform (2009) 0.99
Design and implementation of a personal medication record-MyMedicationList. AMIA Annu Symp Proc (2008) 0.98
An approximate matching method for clinical drug names. AMIA Annu Symp Proc (2011) 0.98
A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. J Biomed Inform (2012) 0.96
Combining relevance assignment with quality of the evidence to support guideline development. Stud Health Technol Inform (2010) 0.94
Machine translation-supported cross-language information retrieval for a consumer health resource. AMIA Annu Symp Proc (2003) 0.94
Exploring lexical forms: first-generation consumer health vocabularies. AMIA Annu Symp Proc (2006) 0.92
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site. Nucleic Acids Res (2008) 0.92
Enhancing biomedical ontologies through alignment of semantic relationships: exploratory approaches. AMIA Annu Symp Proc (2006) 0.91
The UMLS Knowledge Source Server: an experience in Web 2.0 technologies. AMIA Annu Symp Proc (2007) 0.91
Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications. AMIA Annu Symp Proc (2010) 0.90
Auditing the NCI thesaurus with semantic web technologies. AMIA Annu Symp Proc (2008) 0.90
From "glycosyltransferase" to "congenital muscular dystrophy": integrating knowledge from NCBI Entrez Gene and the Gene Ontology. Stud Health Technol Inform (2007) 0.89
Comparing two approaches for aligning representations of anatomy. Artif Intell Med (2007) 0.89
Identifying mismatches in alignments of large anatomical ontologies. AMIA Annu Symp Proc (2007) 0.89
Co-evolutionary rates of functionally related yeast genes. Evol Bioinform Online (2006) 0.88
Issues in creating and maintaining value sets for clinical quality measures. AMIA Annu Symp Proc (2012) 0.88
Two approaches to integrating phenotype and clinical information. AMIA Annu Symp Proc (2009) 0.87
Identification of cis-regulatory elements in gene co-expression networks using A-GLAM. Methods Mol Biol (2009) 0.85
Exploiting UMLS semantics for checking semantic consistency among UMLS concepts. Stud Health Technol Inform (2010) 0.83
A mutation-centric approach to identifying pharmacogenomic relations in text. J Biomed Inform (2012) 0.83
Leveraging terminological resources for mapping between rare disease information sources. Stud Health Technol Inform (2013) 0.83
Semantic webs for life sciences. Pac Symp Biocomput (2006) 0.82
MyMedicationList: integrating personal medication records with resources. AMIA Annu Symp Proc (2008) 0.82
Quality assurance in LOINC using Description Logic. AMIA Annu Symp Proc (2012) 0.82
A normalized lexical lookup approach to identifying UMLS concepts in free text. Stud Health Technol Inform (2007) 0.82
Auditing associative relations across two knowledge sources. J Biomed Inform (2009) 0.81
Enabling complex queries to drug information sources through functional composition. Stud Health Technol Inform (2013) 0.80
Making primarily professional terms more comprehensible to the lay audience. AMIA Annu Symp Proc (2008) 0.80
Exploring pharmacoepidemiologic groupings of drugs from a clinical perspective. Stud Health Technol Inform (2013) 0.80
Issues in the classification of disease instances with ontologies. Stud Health Technol Inform (2005) 0.79
Semantic Predications for Complex Information Needs in Biomedical Literature. IEEE Int Conf Bioinform Biomed Workshops (2015) 0.79
A method for verifying a vector-based text classification system. AMIA Annu Symp Proc (2008) 0.78
Representation of roles in biomedical ontologies: a case study in functional genomics. Proc AMIA Symp (2002) 0.77
The digital revolution in phenotyping. Brief Bioinform (2015) 0.77
Harnessing scientific literature reports for pharmacovigilance. Prototype software analytical tool development and usability testing. Appl Clin Inform (2017) 0.75
Medical concept representation: the years beyond 2000. Stud Health Technol Inform (2013) 0.75
Issues in integrating epidemiology and research information in oncology: experience with ICD-O3 and the NCI Thesaurus. AMIA Annu Symp Proc (2007) 0.75
Integrating the UMLS into an RDF-Based Biomedical Knowledge Repository. AMIA Annu Symp Proc (2007) 0.75
RxNav: a progress report. AMIA Annu Symp Proc (2005) 0.75
Building a medical Spanish lexicon. AMIA Annu Symp Proc (2007) 0.75
Using Lexical tools to convert Unicode characters to ASCII. AMIA Annu Symp Proc (2008) 0.75