Published in Pac Symp Biocomput on January 01, 2005
PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing. Pac Symp Biocomput (2006) 1.76
Computational approaches to phenotyping: high-throughput phenomics. Proc Am Thorac Soc (2007) 1.57
Mapping proteins to disease terminologies: from UniProt to MeSH. BMC Bioinformatics (2008) 1.45
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. BMC Bioinformatics (2009) 1.01
Using semantic and structural properties of the Unified Medical Language System to discover potential terminological relationships. J Am Med Inform Assoc (2009) 0.87
Bio-Ontology and text: bridging the modeling gap. Bioinformatics (2006) 0.86
MeSHing molecular sequences and clinical trials: a feasibility study. J Biomed Inform (2009) 0.85
eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs. J Biomed Inform (2015) 0.77
Knowledge Extraction from MEDLINE by Combining Clustering with Natural Language Processing. AMIA Annu Symp Proc (2015) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res (2004) 25.99
A literature network of human genes for high-throughput analysis of gene expression. Nat Genet (2001) 13.88
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res (2003) 12.81
Online Mendelian Inheritance in Man (OMIM). Hum Mutat (2000) 7.54
Association of genes to genetically inherited diseases using data mining. Nat Genet (2002) 5.78
Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature. Genome Res (2002) 3.77
Circular hierarchical relationships in the UMLS: etiology, diagnosis, treatment, complications and prevention. Proc AMIA Symp (2001) 3.10
Analysis of genomic and proteomic data using advanced literature mining. J Proteome Res (2003) 2.16
Gene annotation from scientific literature using mappings between keyword systems. Bioinformatics (2004) 1.47
Information holds medicine together. MD Comput (1987) 0.89
Advancing translational research with the Semantic Web. BMC Bioinformatics (2007) 4.38
Aligning representations of anatomy using lexical and structural methods. AMIA Annu Symp Proc (2003) 2.82
Translational bioinformatics: linking knowledge across biological and clinical realms. J Am Med Inform Assoc (2011) 2.36
Law and order: assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy. Comput Biol Med (2005) 2.35
Information theory applied to the sparse gene ontology annotation network to predict novel gene function. Bioinformatics (2007) 2.15
Utilizing the UMLS for semantic mapping between terminologies. AMIA Annu Symp Proc (2005) 1.95
The lexical properties of the gene ontology. Proc AMIA Symp (2002) 1.93
Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis. PLoS Comput Biol (2010) 1.92
OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics (2006) 1.90
Use of consomic rats for genomic insights into ventilator-associated lung injury. Am J Physiol Lung Cell Mol Physiol (2007) 1.86
Information Visualization Techniques in Bioinformatics during the Postgenomic Era. Drug Discov Today Biosilico (2004) 1.85
Building the informatics infrastructure for comparative effectiveness research (CER): a review of the literature. Med Care (2012) 1.83
Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference. AMIA Annu Symp Proc (2005) 1.80
Methods for managing variation in clinical drug names. AMIA Annu Symp Proc (2010) 1.76
The foundational model of anatomy in OWL: Experience and perspectives. Web Semant (2006) 1.71
Experience in reasoning with the foundational model of anatomy in OWL DL. Pac Symp Biocomput (2006) 1.63
Experience in Aligning Anatomical Ontologies. Int J Semant Web Inf Syst (2007) 1.62
Approaches to eliminating cycles in the UMLS Metathesaurus: naïve vs. formal. AMIA Annu Symp Proc (2005) 1.55
RxNav: a web service for standard drug information. AMIA Annu Symp Proc (2006) 1.53
An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence. J Biomed Inform (2008) 1.50
Large-scale, Exhaustive Lattice-based Structural Auditing of SNOMED CT. AMIA Annu Symp Proc (2010) 1.47
GenBank and PubMed: How connected are they? BMC Res Notes (2009) 1.44
Appearance of new tetraspanin genes during vertebrate evolution. Genomics (2008) 1.39
A multi-site content analysis of social history information in clinical notes. AMIA Annu Symp Proc (2011) 1.38
Essential role of pre-B-cell colony enhancing factor in ventilator-induced lung injury. Am J Respir Crit Care Med (2008) 1.38
The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. J Biomed Semantics (2011) 1.37
Evaluation of family history information within clinical documents and adequacy of HL7 clinical statement and clinical genomics family history models for its representation: a case report. J Am Med Inform Assoc (2010) 1.37
Mining OMIM for insight into complex diseases. Stud Health Technol Inform (2004) 1.37
The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools. J Am Med Inform Assoc (2013) 1.35
Global similarity and local divergence in human and mouse gene co-expression networks. BMC Evol Biol (2006) 1.32
Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. Bioinformatics (2010) 1.32
Using WordNet to improve the mapping of data elements to UMLS for data sources integration. AMIA Annu Symp Proc (2006) 1.32
Exprtarget: an integrative approach to predicting human microRNA targets. PLoS One (2010) 1.31
Combining lexical and semantic methods of inter-terminology mapping using the UMLS. Stud Health Technol Inform (2007) 1.30
Discovery of protein interaction networks shared by diseases. Pac Symp Biocomput (2007) 1.30
Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. J Biomed Inform (2010) 1.28
Standardizing Clinical Document Names Using the HL7/LOINC Document Ontology and LOINC Codes. AMIA Annu Symp Proc (2010) 1.27
Variants affecting exon skipping contribute to complex traits. PLoS Genet (2012) 1.24
Kinase inhibition-related adverse events predicted from in vitro kinome and clinical trial data. J Biomed Inform (2010) 1.24
uBioRSS: tracking taxonomic literature using RSS. Bioinformatics (2007) 1.23
Social and behavioral history information in public health datasets. AMIA Annu Symp Proc (2012) 1.23
Using the RxNorm web services API for quality assurance prposes. AMIA Annu Symp Proc (2008) 1.21
Mapping data elements to terminological resources for integrating biomedical data sources. BMC Bioinformatics (2006) 1.21
Alignment of the UMLS semantic network with BioTop: methodology and assessment. Bioinformatics (2009) 1.20
Generating executable knowledge for evidence-based medicine using natural language and semantic processing. AMIA Annu Symp Proc (2006) 1.20
Using the abstraction network in complement to description logics for quality assurance in biomedical terminologies - a case study in SNOMED CT. Stud Health Technol Inform (2010) 1.19
Non-muscle myosin light chain kinase isoform is a viable molecular target in acute inflammatory lung injury. Am J Respir Cell Mol Biol (2010) 1.19
A unified framework for managing provenance information in translational research. BMC Bioinformatics (2011) 1.19
Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory. J Am Med Inform Assoc (2012) 1.17
Lessons learned from cross-validating alignments between large anatomical ontologies. Stud Health Technol Inform (2007) 1.16
Single sample expression-anchored mechanisms predict survival in head and neck cancer. PLoS Comput Biol (2012) 1.16
Integration of curated databases to identify genotype-phenotype associations. BMC Genomics (2006) 1.15
Putting data integration into practice: using biomedical terminologies to add structure to existing data sources. AMIA Annu Symp Proc (2003) 1.14
Extracting Rx information from clinical narrative. J Am Med Inform Assoc (2010) 1.14
Extended attributes of event monitor systems for criteria-based notification modalities. Proc AMIA Symp (2002) 1.14
Genomic assessment of a multikinase inhibitor, sorafenib, in a rodent model of pulmonary hypertension. Physiol Genomics (2008) 1.14
Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. J Am Med Inform Assoc (2011) 1.12
An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits. PLoS Comput Biol (2006) 1.12
Enhancing phylogeography by improving geographical information from GenBank. J Biomed Inform (2011) 1.11
Detection of practice pattern trends through Natural Language Processing of clinical narratives and biomedical literature. AMIA Annu Symp Proc (2007) 1.10
Murine lung responses to ambient particulate matter: genomic analysis and influence on airway hyperresponsiveness. Environ Health Perspect (2008) 1.09
A framework for characterizing drug information sources. AMIA Annu Symp Proc (2008) 1.09
Comparing associative relationships among equivalent concepts across ontologies. Stud Health Technol Inform (2004) 1.08
The caBIG terminology review process. J Biomed Inform (2008) 1.08
Besides precision & recall: exploring alternative approaches to evaluating an automatic indexing tool for MEDLINE. AMIA Annu Symp Proc (2006) 1.07
Topological analysis of large-scale biomedical terminology structures. J Am Med Inform Assoc (2007) 1.06
GADD45a is a novel candidate gene in inflammatory lung injury via influences on Akt signaling. FASEB J (2009) 1.06
Identifying clinically disruptive International Classification of Diseases 10th Revision Clinical Modification conversions to mitigate financial costs using an online tool. J Oncol Pract (2014) 1.05
Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. J Am Med Inform Assoc (2010) 1.05
GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns. Bioinformatics (2011) 1.02
Chronic intestinal inflammation induces stress-response genes in commensal Escherichia coli. Gastroenterology (2011) 1.02
Aspects of the Taxonomic Relation in the Biomedical Domain. Form Ontol Inf Syst (2001) 1.02
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. BMC Bioinformatics (2009) 1.01
Classifying diseases with respect to anatomy: a study in SNOMED CT. AMIA Annu Symp Proc (2005) 1.01
Web-based tailoring and its effect on self-efficacy: results from the MI-HEART randomized controlled trial. Proc AMIA Symp (2002) 1.01
MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and Its Application to SNOMED CT. Proc IEEE Int Conf Big Data (2014) 0.99
Analyzing polysemous concepts from a clinical perspective: application to auditing concept categorization in the UMLS. J Biomed Inform (2009) 0.99
The phylogeny of rodent malaria parasites: simultaneous analysis across three genomes. Infect Genet Evol (2006) 0.99
Role of sphingolipids in murine radiation-induced lung injury: protection by sphingosine 1-phosphate analogs. FASEB J (2011) 0.98
Design and implementation of a personal medication record-MyMedicationList. AMIA Annu Symp Proc (2008) 0.98
An approximate matching method for clinical drug names. AMIA Annu Symp Proc (2011) 0.98
Deregulation of a Hox protein regulatory network spanning prostate cancer initiation and progression. Clin Cancer Res (2012) 0.98
Concordance of deregulated mechanisms unveiled in underpowered experiments: PTBP1 knockdown case study. BMC Med Genomics (2014) 0.98
Simvastatin attenuates radiation-induced murine lung injury and dysregulated lung gene expression. Am J Respir Cell Mol Biol (2010) 0.98
The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy. Brief Bioinform (2011) 0.96
A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. J Biomed Inform (2012) 0.96
Visualizing information across multidimensional post-genomic structured and textual databases. Bioinformatics (2004) 0.96
Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases. J Am Med Inform Assoc (2013) 0.95
Combining relevance assignment with quality of the evidence to support guideline development. Stud Health Technol Inform (2010) 0.94
A "systematics" tool for medical terminologies. AMIA Annu Symp Proc (2003) 0.94
Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. J Am Med Inform Assoc (2012) 0.93
mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests. Bioinformatics (2005) 0.92
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site. Nucleic Acids Res (2008) 0.92
Particulate matter induces cardiac arrhythmias via dysregulation of carotid body sensitivity and cardiac sodium channels. Am J Respir Cell Mol Biol (2011) 0.91
Enhancing biomedical ontologies through alignment of semantic relationships: exploratory approaches. AMIA Annu Symp Proc (2006) 0.91
Adapting current Arden Syntax knowledge for an object oriented event monitor. AMIA Annu Symp Proc (2003) 0.90
Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications. AMIA Annu Symp Proc (2010) 0.90
Auditing the NCI thesaurus with semantic web technologies. AMIA Annu Symp Proc (2008) 0.90
From "glycosyltransferase" to "congenital muscular dystrophy": integrating knowledge from NCBI Entrez Gene and the Gene Ontology. Stud Health Technol Inform (2007) 0.89