Published in Nat Rev Genet on January 01, 2003
A simple and robust statistical test for detecting the presence of recombination. Genetics (2006) 6.71
An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics (2007) 3.76
Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition. Genome Biol (2007) 3.10
Plasmodium falciparum erythrocyte membrane protein 1 diversity in seven genomes--divide and conquer. PLoS Comput Biol (2010) 2.80
Pervasive genomic recombination of HIV-1 in vivo. Genetics (2004) 2.79
Recombination hotspots and population structure in Plasmodium falciparum. PLoS Biol (2005) 2.67
Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl Environ Microbiol (2004) 2.56
Ten reasons to exclude viruses from the tree of life. Nat Rev Microbiol (2009) 2.39
Estimating diversifying selection and functional constraint in the presence of recombination. Genetics (2005) 2.02
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biol (2008) 1.80
Comparative analysis reveals frequent recombination in the parvoviruses. J Gen Virol (2007) 1.64
The spread of tomato yellow leaf curl virus from the Middle East to the world. PLoS Pathog (2010) 1.62
Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes. J Virol (2010) 1.46
Analysis of recombination in Campylobacter jejuni from MLST population data. J Mol Evol (2005) 1.40
Signatures of selection among sex-determining alleles of the honey bee. Proc Natl Acad Sci U S A (2004) 1.37
Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography. BMC Bioinformatics (2007) 1.27
Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa. Proc Natl Acad Sci U S A (2012) 1.26
Mutability dynamics of an emergent single stranded DNA virus in a naïve host. PLoS One (2014) 1.25
The effect of recombination on the reconstruction of ancestral sequences. Genetics (2010) 1.25
Evolution in Candida albicans populations during a single passage through a mouse host. Genetics (2009) 1.24
Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method. Mol Biol Evol (2006) 1.23
Recombination every day: abundant recombination in a virus during a single multi-cellular host infection. PLoS Biol (2005) 1.19
Recent, independent and anthropogenic origins of Trypanosoma cruzi hybrids. PLoS Negl Trop Dis (2011) 1.17
Drift increases the advantage of sex in RNA bacteriophage Phi6. Genetics (2004) 1.16
Evaluation of the antigenic diversity of placenta-binding Plasmodium falciparum variants and the antibody repertoire among pregnant women. Infect Immun (2010) 1.15
Population genetics of Toxoplasma gondii: new perspectives from parasite genotypes in wildlife. Vet Parasitol (2011) 1.13
Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. J Gen Virol (2008) 1.12
The 3'-to-5' exonuclease activity of vaccinia virus DNA polymerase is essential and plays a role in promoting virus genetic recombination. J Virol (2009) 1.09
Accurate detection of recombinant breakpoints in whole-genome alignments. PLoS Comput Biol (2009) 1.06
Natural competence and recombination in the plant pathogen Xylella fastidiosa. Appl Environ Microbiol (2011) 1.01
Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes. Genetics (2006) 0.98
A network approach to analyzing highly recombinant malaria parasite genes. PLoS Comput Biol (2013) 0.97
Population genomics in bacteria: a case study of Staphylococcus aureus. Mol Biol Evol (2011) 0.94
Phylogenetic detection of recombination with a Bayesian prior on the distance between trees. PLoS One (2008) 0.90
The extent and importance of intragenic recombination. Hum Genomics (2004) 0.86
Genome-wide patterns of recombination in the opportunistic human pathogen Pseudomonas aeruginosa. Genome Biol Evol (2014) 0.85
Recombination in feline immunodeficiency virus genomes from naturally infected cougars. Virology (2007) 0.85
Discriminating micropathogen lineages and their reticulate evolution through graph theory-based network analysis: the case of Trypanosoma cruzi, the agent of Chagas disease. PLoS One (2014) 0.82
Evolution of viruses and cells: do we need a fourth domain of life to explain the origin of eukaryotes? Philos Trans R Soc Lond B Biol Sci (2015) 0.81
The population genomics of begomoviruses: global scale population structure and gene flow. Virol J (2010) 0.81
Computer programs and methodologies for the simulation of DNA sequence data with recombination. Front Genet (2013) 0.81
Impact of loci nature on estimating recombination and mutation rates in Chlamydia trachomatis. G3 (Bethesda) (2012) 0.81
East African cassava mosaic-like viruses from Africa to Indian ocean islands: molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus. BMC Evol Biol (2012) 0.81
Crimean-Congo hemorrhagic fever virus clades V and VI (Europe 1 and 2) in ticks in Kosovo, 2012. PLoS Negl Trop Dis (2014) 0.80
A novel computational method identifies intra- and inter-species recombination events in Staphylococcus aureus and Streptococcus pneumoniae. PLoS Comput Biol (2012) 0.80
Coping with genetic diversity: the contribution of pathogen and human genomics to modern vaccinology. Braz J Med Biol Res (2011) 0.79
The Impact of Recombination Hotspots on Genome Evolution of a Fungal Plant Pathogen. Genetics (2015) 0.79
High levels of multiple infections, recombination and horizontal transmission of Wolbachia in the Andricus mukaigawae (Hymenoptera; Cynipidae) communities. PLoS One (2013) 0.78
The impact of mutation and gene conversion on the local diversification of antigen genes in African trypanosomes. Mol Biol Evol (2012) 0.77
Model-based inference of recombination hotspots in a highly variable oncogene [corrected]. J Mol Evol (2004) 0.77
Practical Approaches for Detecting Selection in Microbial Genomes. PLoS Comput Biol (2016) 0.77
A model for genome size evolution. Bull Math Biol (2014) 0.77
Multiple introductions and recombination in Cryphonectria hypovirus 1: perspective for a sustainable biological control of chestnut blight. Evol Appl (2014) 0.75
Horizontal gene transfer events reshape the global landscape of arm race between viruses and homo sapiens. Sci Rep (2016) 0.75
Co-infection with two strains of Brome mosaic bromovirus reveals common RNA recombination sites in different hosts. Virus Evol (2015) 0.75
Synonymous and nonsynonymous distances help untangle convergent evolution and recombination. Stat Appl Genet Mol Biol (2015) 0.75
An Ecological Framework of the Human Virome Provides Classification of Current Knowledge and Identifies Areas of Forthcoming Discovery. Yale J Biol Med (2016) 0.75
Coevolution between transposable elements and recombination. Philos Trans R Soc Lond B Biol Sci (2017) 0.75
Variation in recombination frequency and distribution across eukaryotes: patterns and processes. Philos Trans R Soc Lond B Biol Sci (2017) 0.75