Published in Nucleic Acids Res on January 15, 2003
Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions. PLoS One (2010) 1.46
Influence of dangling ends and surface-proximal tails of targets on probe-target duplex formation in 16S rRNA gene-based diagnostic arrays. Appl Environ Microbiol (2006) 0.98
In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water. Appl Environ Microbiol (2008) 0.90
Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays. Nucleic Acids Res (2003) 0.90
LifePrint: a novel k-tuple distance method for construction of phylogenetic trees. Adv Appl Bioinform Chem (2011) 0.87
In Silico Genomic Fingerprints of the Bacillus anthracis Group Obtained by Virtual Hybridization. Microarrays (Basel) (2015) 0.86
Highly specific and efficient primers for in-house multiplex PCR detection of Chlamydia trachomatis, Neisseria gonorrhoeae, Mycoplasma hominis and Ureaplasma urealyticum. BMC Res Notes (2014) 0.81
Universal fingerprinting chip server. Bioinformation (2012) 0.81
Bioinformatics prediction of siRNAs as potential antiviral agents against dengue viruses. Bioinformation (2012) 0.79
A low density microarray method for the identification of human papillomavirus type 18 variants. Sensors (Basel) (2013) 0.79
Specific mutation screening of TP53 gene by low-density DNA microarray. Nanotechnol Sci Appl (2009) 0.75
The theoretical basis of universal identification systems for bacteria and viruses. J Biol Phys Chem (2005) 0.75
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci U S A (1998) 24.28
Multiple sequence alignment with Clustal X. Trends Biochem Sci (1998) 15.10
Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches. Biochemistry (1999) 7.50
Thermodynamics and NMR of internal G.T mismatches in DNA. Biochemistry (1997) 7.33
PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid. J Clin Microbiol (1994) 6.33
Molecular interactions on microarrays. Nat Genet (1999) 5.04
High-density microarray of small-subunit ribosomal DNA probes. Appl Environ Microbiol (2002) 4.95
Cloning and expression in Pseudomonas aeruginosa of a gene involved in the production of alginate. J Bacteriol (1984) 4.95
Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA. Biochemistry (1998) 4.85
Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects. Biochemistry (1998) 4.75
Thermodynamics of internal C.T mismatches in DNA. Nucleic Acids Res (1998) 4.62
DNA chips: state-of-the art. Nat Biotechnol (1998) 3.31
Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays. Appl Environ Microbiol (2001) 2.47
Accurate sequencing by hybridization for DNA diagnostics and individual genomics. Nat Biotechnol (1998) 1.83
Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach. Environ Microbiol (2001) 1.79
Optical melting of 128 octamer DNA duplexes. Effects of base pair location and nearest neighbors on thermal stability. J Biol Chem (1995) 1.59
Portable system for microbial sample preparation and oligonucleotide microarray analysis. Appl Environ Microbiol (2001) 1.36
Hybridization of DNA targets to glass-tethered oligonucleotide probes. Mol Biotechnol (1995) 1.02
Mutation detection by stacking hybridization on genosensor arrays. Mol Biotechnol (1999) 0.99
Advances in genosensor research. Clin Chem (1995) 0.97
Hybridization of glass-tethered oligonucleotide probes to target strands preannealed with labeled auxiliary oligonucleotides. Mol Biotechnol (1999) 0.94
Analysis of nucleic acids by tandem hybridization on oligonucleotide microarrays. Methods Mol Biol (2001) 0.84
Distribution of alginate genes in bacterial isolates from corroded metal surfaces. Microb Ecol (1994) 0.81
Towards environmental toxicogenomics -- development of a flow-through, high-density DNA hybridization array and its application to ecotoxicity assessment. Sci Total Environ (2001) 0.79
Modification of an automated liquid-handling system for reagent-jet, nanoliter-level dispensing. Biotechniques (2001) 0.79
Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Appl Environ Microbiol (2011) 1.96
Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. J Bacteriol (2012) 1.60
Expression of KLF4 is a predictive marker for survival in pediatric Burkitt lymphoma. Leuk Lymphoma (2014) 1.44
Actuatable membranes based on polypyrrole-coated vertically aligned carbon nanofibers. ACS Nano (2008) 1.20
Effects of engineered cerium oxide nanoparticles on bacterial growth and viability. Appl Environ Microbiol (2010) 1.16
Cytotoxicity induced by engineered silver nanocrystallites is dependent on surface coatings and cell types. Langmuir (2012) 1.13
Controlling the Dimensions of Carbon Nanofiber Structures through the Electropolymerization of Pyrrole. Synth Met (2007) 1.10
Attributing effects of aqueous C60 nano-aggregates to tetrahydrofuran decomposition products in larval zebrafish by assessment of gene expression. Environ Health Perspect (2007) 1.08
Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides. J Bacteriol (2012) 1.06
Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness. Mol Plant Microbe Interact (2012) 1.06
Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis. Acta Biomater (2011) 1.02
Application of AFM in understanding biomineral formation in diatoms. Pflugers Arch (2007) 1.01
Phylogenetic and structural analysis of translationally controlled tumor proteins. J Mol Evol (2008) 0.98
Monodisperse alginate microgel formation in a three-dimensional microfluidic droplet generator. Biomicrofluidics (2012) 0.98
Silver nanocrystallites: biofabrication using Shewanella oneidensis, and an evaluation of their comparative toxicity on gram-negative and gram-positive bacteria. Environ Sci Technol (2010) 0.97
Expression optimization and synthetic gene networks in cell-free systems. Nucleic Acids Res (2011) 0.96
Atomic force microscopy of biological samples. Wiley Interdiscip Rev Nanomed Nanobiotechnol (2010) 0.96
Continuous protein production in nanoporous, picolitre volume containers. Lab Chip (2011) 0.95
A general system for studying protein-protein interactions in Gram-negative bacteria. J Proteome Res (2008) 0.95
Effects of colistin on surface ultrastructure and nanomechanics of Pseudomonas aeruginosa cells. Langmuir (2009) 0.94
In vitro immune toxicity of depleted uranium: effects on murine macrophages, CD4+ T cells, and gene expression profiles. Environ Health Perspect (2006) 0.92
Relating nanomaterial properties and microbial toxicity. Nanoscale (2012) 0.92
Development and fabrication of nanoporous silicon-based bioreactors within a microfluidic chip. Lab Chip (2010) 0.91
Model for biological communication in a nanofabricated cell-mimic driven by stochastic resonance. Nano Commun Netw (2011) 0.91
Geographical variation in human papillomavirus prevalence in Mexican women with normal cytology. Int J Infect Dis (2010) 0.90
Development of two multiplex polymerase chain reactions for the detection of enterotoxigenic strains of Staphylococcus aureus isolated from foods. J Food Prot (2003) 0.89
Display and release of the Plasmodium falciparum circumsporozoite protein using the autotransporter MisL of Salmonella enterica. Plasmid (2003) 0.87
LifePrint: a novel k-tuple distance method for construction of phylogenetic trees. Adv Appl Bioinform Chem (2011) 0.87
Monodispersed biocompatible silver sulfide nanoparticles: facile extracellular biosynthesis using the γ-proteobacterium, Shewanella oneidensis. Acta Biomater (2011) 0.87
The near-naked hairless (Hr(N)) mutation disrupts hair formation but is not due to a mutation in the Hairless coding region. J Invest Dermatol (2007) 0.83
Bacterial classification using genomic fingerprints obtained by virtual hybridization. J Microbiol Methods (2011) 0.83
Cell Free Translation in Engineered Picoliter Volume Containers. Annu ORNL Biomed Sci Eng Cent Conf (2009) 0.83
Evaluation of a surface-sampling probe electrospray mass spectrometry system for the analysis of surface-deposited and affinity-captured proteins. Rapid Commun Mass Spectrom (2006) 0.83
The chemotaxis-like Che1 pathway has an indirect role in adhesive cell properties of Azospirillum brasilense. FEMS Microbiol Lett (2011) 0.82
Multi-input regulation and logic with T7 promoters in cells and cell-free systems. PLoS One (2013) 0.81
Evaluation of a plasmid-based 16S-23S rDNA intergenic spacer region array for analysis of microbial diversity in industrial wastewater. J Microbiol Methods (2004) 0.81
Effects of sub-minimum inhibitory concentrations of ciprofloxacin on enteroaggregative Escherichia coli and the role of the surface protein dispersin. Int J Antimicrob Agents (2011) 0.81
Reversible electrowetting of vertically aligned superhydrophobic carbon nanofibers. Langmuir (2006) 0.81
Universal fingerprinting chip server. Bioinformation (2012) 0.81
An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities. Anal Biochem (2009) 0.81
Characterization of cell surface and extracellular matrix remodeling of Azospirillum brasilense chemotaxis-like 1 signal transduction pathway mutants by atomic force microscopy. FEMS Microbiol Lett (2010) 0.81
Positional control of catalyst nanoparticles for the synthesis of high density carbon nanofiber arrays. Carbon N Y (2008) 0.81
Enzyme reactions in nanoporous, picoliter volume containers. Anal Chem (2011) 0.80
Low density DNA microarray for detection of most frequent TP53 missense point mutations. BMC Biotechnol (2005) 0.80
Detection of mutations in RET proto-oncogene codon 634 through double tandem hybridization. Mol Biotechnol (2003) 0.79
Populus trichocarpa and Populus deltoides exhibit different metabolomic responses to colonization by the symbiotic fungus Laccaria bicolor. Mol Plant Microbe Interact (2014) 0.79
Bioinformatics prediction of siRNAs as potential antiviral agents against dengue viruses. Bioinformation (2012) 0.79
New surface radiolabeling schemes of super paramagnetic iron oxide nanoparticles (SPIONs) for biodistribution studies. Nanoscale (2015) 0.79
Design of a set of probes with high potential for influenza virus epidemiological surveillance. Bioinformation (2013) 0.78
In silico evaluation of a novel DNA chip based fingerprinting technology for viral identification. Rev Latinoam Microbiol (2007) 0.78
Microstencils to generate defined, multi-species patterns of bacteria. Biomicrofluidics (2015) 0.78
Channel glass-based detection of human short insertion/deletion polymorphisms by tandem hybridization. Mol Biotechnol (2007) 0.78
Thrombin-mediated transcriptional regulation using DNA aptamers in DNA-based cell-free protein synthesis. ACS Synth Biol (2013) 0.77
Surface patterning of silica nanostructures using bio-inspired templates and directed synthesis. Langmuir (2004) 0.77
A Toll/IL-1R/resistance domain-containing thioredoxin regulates phagocytosis in Entamoeba histolytica. Parasit Vectors (2012) 0.76
Surface charge- and space-dependent transport of proteins in crowded environments of nanotailored posts. ACS Nano (2010) 0.76
Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes. OMICS (2002) 0.76
Biomineralization at the nanoscale learning from diatoms. Methods Cell Biol (2008) 0.76
Effects of ultramicroelectrode dimensions on the electropolymerization of polypyrrole. J Appl Phys (2009) 0.75
Rationally designed vaccines. Nanomedicine (Lond) (2012) 0.75
Papillomavirus binding factor (PBF) is an intrinsically disordered protein with potential participation in osteosarcoma genesis, in silico evidence. Theor Biol Med Model (2014) 0.75
Specific mutation screening of TP53 gene by low-density DNA microarray. Nanotechnol Sci Appl (2009) 0.75
Multilayered nanoparticles for siRNA delivery. Nanomedicine (Lond) (2012) 0.75
Nanozymes for antiviral therapy. Nanomedicine (Lond) (2012) 0.75
Shear-activated nanotherapeutics. Nanomedicine (Lond) (2012) 0.75
Correction: Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. PLoS One (2016) 0.75
In Vivo Protein Dynamics on the Nanometer Length Scale and Nanosecond Time Scale. J Phys Chem Lett (2017) 0.75
Layer-by-layer templated assembly of silica at the nanoscale. Langmuir (2013) 0.75
Proteomics-Based Tools for Evaluation of Cell-Free Protein Synthesis. Anal Chem (2017) 0.75
Peptides Derived from Glycoproteins H and B of Herpes Simplex Virus Type 1 and Herpes Simplex Virus Type 2 Are Capable of Blocking Herpetic Infection in vitro. Intervirology (2017) 0.75
[Strategies for clinical and molecular diagnosis of Charcot-Marie-Tooth 1A among Mexican patients]. Gac Med Mex (2008) 0.75
Volume labeling with Alexa Fluor dyes and surface functionalization of highly sensitive fluorescent silica (SiO2) nanoparticles. Nanoscale (2013) 0.75
[Microarray design using virtual hybridization to study variations in REP-CMT1A sites]. Gac Med Mex (2008) 0.75
Optimized beadmilling of tissues for high-throughput RNA production and microarray-based analyses. Anal Biochem (2004) 0.75
Capillary electrophoresis for the detection of PMP22 gene duplication: study in Mexican patients. Electrophoresis (2008) 0.75
Enteroaggregative Escherichia coli: surface protein dispersin increases bacterial uptake of ciprofloxacin. Int J Antimicrob Agents (2013) 0.75
A comparison of hybridization efficiency between flat glass and channel glass solid supports. Mol Biotechnol (2007) 0.75