Published in Genomics on April 01, 2003
Using population admixture to help complete maps of the human genome. Nat Genet (2013) 1.35
A map of copy number variations in Chinese populations. PLoS One (2011) 1.05
Evidence for widespread reticulate evolution within human duplicons. Am J Hum Genet (2005) 0.98
Heterochromatic genes undergo epigenetic changes and escape silencing in immunodeficiency, centromeric instability, facial anomalies (ICF) syndrome. PLoS One (2011) 0.91
Mapping of the juxtacentromeric heterochromatin-euchromatin frontier of human chromosome 21. Genome Res (2006) 0.88
AT-rich repeats associated with chromosome 22q11.2 rearrangement disorders shape human genome architecture on Yq12. Genome Res (2007) 0.85
A programmable method for massively parallel targeted sequencing. Nucleic Acids Res (2014) 0.82
Identification of regions of positive selection using Shared Genomic Segment analysis. Eur J Hum Genet (2011) 0.80
BAGE Hypomethylation Is an Early Event in Colon Transformation and Is Frequent in Histologically Advanced Adenomas. Cancers (Basel) (2009) 0.75
Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution. Nat Genet (2007) 10.38
A recurrent 15q13.3 microdeletion syndrome associated with mental retardation and seizures. Nat Genet (2008) 8.44
Population size does not influence mitochondrial genetic diversity in animals. Science (2006) 7.04
A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature (2005) 5.51
Characterization of missing human genome sequences and copy-number polymorphic insertions. Nat Methods (2010) 5.44
Biased gene conversion and the evolution of mammalian genomic landscapes. Annu Rev Genomics Hum Genet (2009) 4.12
Noninvasive whole-genome sequencing of a human fetus. Sci Transl Med (2012) 3.94
Comparative and demographic analysis of orang-utan genomes. Nature (2011) 3.83
A burst of segmental duplications in the genome of the African great ape ancestor. Nature (2009) 3.63
Evolutionary toggling of the MAPT 17q21.31 inversion region. Nat Genet (2008) 3.42
Heterozygous submicroscopic inversions involving olfactory receptor-gene clusters mediate the recurrent t(4;8)(p16;p23) translocation. Am J Hum Genet (2002) 3.09
Great ape genetic diversity and population history. Nature (2013) 2.95
Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics. BMC Bioinformatics (2006) 2.77
A genome-wide survey of structural variation between human and chimpanzee. Genome Res (2005) 2.61
A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. Nat Genet (2010) 2.57
Recurrent reciprocal genomic rearrangements of 17q12 are associated with renal disease, diabetes, and epilepsy. Am J Hum Genet (2007) 2.54
The bonobo genome compared with the chimpanzee and human genomes. Nature (2012) 2.49
The genomic architecture of segmental duplications and associated copy number variants in dogs. Genome Res (2009) 2.44
Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Res (2003) 2.41
Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis. Mol Biol Evol (2007) 2.33
Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria). BMC Biol (2012) 2.08
The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals. BMC Evol Biol (2009) 2.07
Analysis of copy number variations among diverse cattle breeds. Genome Res (2010) 2.02
Characterization of six human disease-associated inversion polymorphisms. Hum Mol Genet (2009) 2.00
Human-specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22. Am J Hum Genet (2001) 1.95
Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap. PLoS Genet (2013) 1.91
Analysis of segmental duplications and genome assembly in the mouse. Genome Res (2004) 1.89
Vanishing GC-rich isochores in mammalian genomes. Genetics (2002) 1.86
Death and resurrection of the human IRGM gene. PLoS Genet (2009) 1.72
The population genomics of a fast evolver: high levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalis. Genome Biol Evol (2012) 1.71
A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications. Genome Res (2006) 1.69
Evolutionary formation of new centromeres in macaque. Science (2007) 1.67
Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster. Genome Biol (2003) 1.65
Copy number variation of individual cattle genomes using next-generation sequencing. Genome Res (2012) 1.62
Alu repeat discovery and characterization within human genomes. Genome Res (2010) 1.62
A model-based approach for detecting coevolving positions in a molecule. Mol Biol Evol (2005) 1.59
A new perspective on isochore evolution. Gene (2006) 1.57
Recurrent sites for new centromere seeding. Genome Res (2004) 1.54
Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res (2010) 1.52
Genomic characteristics of cattle copy number variations. BMC Genomics (2011) 1.48
Recurrent duplication-driven transposition of DNA during hominoid evolution. Proc Natl Acad Sci U S A (2006) 1.47
Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee. Genome Res (2011) 1.47
Determination of mitochondrial genetic diversity in mammals. Genetics (2008) 1.46
Neocentromeres in 15q24-26 map to duplicons which flanked an ancestral centromere in 15q25. Genome Res (2003) 1.44
Copy number variation of CCL3-like genes affects rate of progression to simian-AIDS in Rhesus Macaques (Macaca mulatta). PLoS Genet (2009) 1.43
Recombination explains isochores in mammalian genomes. Trends Genet (2003) 1.43
Analysis of recent segmental duplications in the bovine genome. BMC Genomics (2009) 1.36
MLL3, a new human member of the TRX/MLL gene family, maps to 7q36, a chromosome region frequently deleted in myeloid leukaemia. Gene (2002) 1.36
Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics (2006) 1.34
Tracking the complex flow of chromosome rearrangements from the Hominoidea Ancestor to extant Hylobates and Nomascus Gibbons by high-resolution synteny mapping. Genome Res (2008) 1.29
Evolution and diversity of copy number variation in the great ape lineage. Genome Res (2013) 1.29
The decline of isochores in mammals: an assessment of the GC content variation along the mammalian phylogeny. J Mol Evol (2004) 1.28
Dating cryptodiran nodes: origin and diversification of the turtle superfamily Testudinoidea. Mol Phylogenet Evol (2011) 1.28
Detecting positive selection within genomes: the problem of biased gene conversion. Philos Trans R Soc Lond B Biol Sci (2010) 1.25
A 76-kb duplicon maps close to the BCR gene on chromosome 22 and the ABL gene on chromosome 9: possible involvement in the genesis of the Philadelphia chromosome translocation. Proc Natl Acad Sci U S A (2002) 1.25
Bio++: efficient extensible libraries and tools for computational molecular evolution. Mol Biol Evol (2013) 1.23
Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites. Genome Res (2008) 1.21
Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals. Mol Ecol Resour (2011) 1.19
Molecular refinement of gibbon genome rearrangements. Genome Res (2006) 1.16
Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals. Mol Biol Evol (2013) 1.14
Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome. Mol Biol Evol (2012) 1.13
Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs. Genome Biol (2006) 1.13
Chromosome 6 phylogeny in primates and centromere repositioning. Mol Biol Evol (2003) 1.13
Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data. PLoS Comput Biol (2007) 1.13
A covarion-based method for detecting molecular adaptation: application to the evolution of primate mitochondrial genomes. Proc Biol Sci (2002) 1.12
Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Res (2010) 1.12
Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. Genome Res (2002) 1.10
Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes. PLoS Comput Biol (2008) 1.05
Hominoid chromosomal rearrangements on 17q map to complex regions of segmental duplication. Genome Biol (2008) 1.04
Detecting groups of coevolving positions in a molecule: a clustering approach. BMC Evol Biol (2007) 1.03
Polymorphix: a sequence polymorphism database. Nucleic Acids Res (2005) 1.03
Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species. Mol Biol Evol (2013) 1.03
Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biol Evol (2012) 1.02
Sex chromosomes: how X-Y recombination stops. Curr Biol (2003) 1.02
Refinement of macaque synteny arrangement with respect to the official rheMac2 macaque sequence assembly. Chromosome Res (2008) 1.01
Ancestral genomes reconstruction: an integrated, multi-disciplinary approach is needed. Genome Res (2006) 1.00
Comment on "Human-specific gain of function in a developmental enhancer". Science (2009) 0.99
Non-invasive fetal genome sequencing: opportunities and challenges. Am J Med Genet A (2012) 0.98
Punctuated duplication seeding events during the evolution of human chromosome 2p11. Genome Res (2005) 0.97
Evolutionary history of chromosome 10 in primates. Chromosoma (2002) 0.97
An evolutionary genome scan for longevity-related natural selection in mammals. Mol Biol Evol (2009) 0.96
Complex events in the evolution of the human pseudoautosomal region 2 (PAR2). Genome Res (2003) 0.96
GC-biased gene conversion impacts ribosomal DNA evolution in vertebrates, angiosperms, and other eukaryotes. Mol Biol Evol (2011) 0.95
Complexity, pleiotropy, and the fitness effect of mutations. Evolution (2011) 0.94
Evolutionary history of chromosome 20. Mol Biol Evol (2004) 0.93
Frequent DNA hypomethylation of human juxtacentromeric BAGE loci in cancer. Genes Chromosomes Cancer (2005) 0.91
Heterochromatic genes undergo epigenetic changes and escape silencing in immunodeficiency, centromeric instability, facial anomalies (ICF) syndrome. PLoS One (2011) 0.91
Rates and patterns of great ape retrotransposition. Proc Natl Acad Sci U S A (2013) 0.90
Accelerated evolutionary rate of housekeeping genes in tunicates. J Mol Evol (2010) 0.89
Initial analysis of copy number variations in cattle selected for resistance or susceptibility to intestinal nematodes. Mamm Genome (2010) 0.89
Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping. PLoS One (2012) 0.89
Analysis of high-identity segmental duplications in the grapevine genome. BMC Genomics (2011) 0.89