Published in J Mol Biol on May 02, 2003
Structural classification of bacterial response regulators: diversity of output domains and domain combinations. J Bacteriol (2006) 3.86
Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiol Mol Biol Rev (2004) 2.38
Detection of and response to signals involved in host-microbe interactions by plant-associated bacteria. Microbiol Mol Biol Rev (2005) 1.74
The crystal structure of AphB, a virulence gene activator from Vibrio cholerae, reveals residues that influence its response to oxygen and pH. Mol Microbiol (2012) 1.64
A LysR-type regulator, CidR, is required for induction of the Staphylococcus aureus cidABC operon. J Bacteriol (2005) 1.50
Crystal structure of the virulence gene activator AphA from Vibrio cholerae reveals it is a novel member of the winged helix transcription factor superfamily. J Biol Chem (2005) 1.21
QseA directly activates transcription of LEE1 in enterohemorrhagic Escherichia coli. Infect Immun (2007) 1.16
Dimerization of the quorum-sensing transcription factor TraR enhances resistance to cytoplasmic proteolysis. Mol Microbiol (2009) 1.09
The LysR-type transcriptional regulator VirR is required for expression of the virulence gene vapA of Rhodococcus equi ATCC 33701. J Bacteriol (2004) 1.06
Genome shuffling improves degradation of the anthropogenic pesticide pentachlorophenol by Sphingobium chlorophenolicum ATCC 39723. Appl Environ Microbiol (2004) 1.05
Importance of tetramer formation by the nitrogen assimilation control protein for strong repression of glutamate dehydrogenase formation in Klebsiella pneumoniae. J Bacteriol (2005) 1.05
The structure of CrgA from Neisseria meningitidis reveals a new octameric assembly state for LysR transcriptional regulators. Nucleic Acids Res (2009) 1.03
The transcriptional factors MurR and catabolite activator protein regulate N-acetylmuramic acid catabolism in Escherichia coli. J Bacteriol (2008) 1.00
Structures of open (R) and close (T) states of prephenate dehydratase (PDT)--implication of allosteric regulation by L-phenylalanine. J Struct Biol (2007) 0.99
Molecular mechanism of the regulation of Bacillus subtilis gltAB expression by GltC. J Mol Biol (2006) 0.99
Benzoate decreases the binding of cis,cis-muconate to the BenM regulator despite the synergistic effect of both compounds on transcriptional activation. J Bacteriol (2004) 0.99
Transcriptional activation of multiple operons involved in para-nitrophenol degradation by Pseudomonas sp. Strain WBC-3. Appl Environ Microbiol (2014) 0.98
The cation-responsive protein NhaR of Escherichia coli activates pgaABCD transcription, required for production of the biofilm adhesin poly-beta-1,6-N-acetyl-D-glucosamine. J Bacteriol (2006) 0.97
The control of death and lysis in staphylococcal biofilms: a coordination of physiological signals. Curr Opin Microbiol (2012) 0.96
CcpC-dependent regulation of citB and lmo0847 in Listeria monocytogenes. J Bacteriol (2006) 0.92
Crystallization and preliminary X-ray analysis of CrgA, a LysR-type transcriptional regulator from pathogenic Neisseria meningitidis MC58. Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 0.92
Regulatory system of the protocatechuate 4,5-cleavage pathway genes essential for lignin downstream catabolism. J Bacteriol (2010) 0.90
Oligomerization of BenM, a LysR-type transcriptional regulator: structural basis for the aggregation of proteins in this family. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.89
The β-lactamase gene regulator AmpR is a tetramer that recognizes and binds the D-Ala-D-Ala motif of its repressor UDP-N-acetylmuramic acid (MurNAc)-pentapeptide. J Biol Chem (2014) 0.87
Intra-chain 3D segment swapping spawns the evolution of new multidomain protein architectures. J Mol Biol (2011) 0.87
The oligomerization of OxyR in Escherichia coli. Protein Sci (2009) 0.87
Structural and functional characterization of Pseudomonas aeruginosa global regulator AmpR. J Bacteriol (2014) 0.87
Three of four GlnR binding sites are essential for GlnR-mediated activation of transcription of the Amycolatopsis mediterranei nas operon. J Bacteriol (2013) 0.87
Binding site determinants for the LysR-type transcriptional regulator PcaQ in the legume endosymbiont Sinorhizobium meliloti. J Bacteriol (2007) 0.86
The structure of a reduced form of OxyR from Neisseria meningitidis. BMC Struct Biol (2010) 0.86
Structure of lambda CII: implications for recognition of direct-repeat DNA by an unusual tetrameric organization. Proc Natl Acad Sci U S A (2005) 0.85
The helix-turn-helix motif of bacterial insertion sequence IS911 transposase is required for DNA binding. Nucleic Acids Res (2004) 0.85
Genetic analysis of the nitrogen assimilation control protein from Klebsiella pneumoniae. J Bacteriol (2010) 0.84
Cross-regulation of biphenyl- and salicylate-catabolic genes by two regulatory systems in Pseudomonas pseudoalcaligenes KF707. J Bacteriol (2006) 0.84
CatM regulation of the benABCDE operon: functional divergence of two LysR-type paralogs in Acinetobacter baylyi ADP1. Appl Environ Microbiol (2006) 0.84
The LysR-type nitrogen assimilation control protein forms complexes with both long and short DNA binding sites in the absence of coeffectors. J Bacteriol (2010) 0.83
Properties of the NAC (nitrogen assimilation control protein)-binding site within the ureD promoter of Klebsiella pneumoniae. J Bacteriol (2010) 0.83
The Salmonella enterica serovar Typhi LeuO global regulator forms tetramers: residues involved in oligomerization, DNA binding, and transcriptional regulation. J Bacteriol (2014) 0.81
The mycobacterial LysR-type regulator OxyS responds to oxidative stress and negatively regulates expression of the catalase-peroxidase gene. PLoS One (2012) 0.81
Modulating DNA bending affects NodD-mediated transcriptional control in Rhizobium leguminosarum. Nucleic Acids Res (2005) 0.80
Mutational analysis to define an activating region on the redox-sensitive transcriptional regulator OxyR. J Bacteriol (2006) 0.80
Crystal structures of the LsrR proteins complexed with phospho-AI-2 and two signal-interrupting analogues reveal distinct mechanisms for ligand recognition. J Am Chem Soc (2013) 0.80
Factors that influence the response of the LysR type transcriptional regulators to aromatic compounds. BMC Biochem (2011) 0.78
The oligomerization of CynR in Escherichia coli. Protein Sci (2009) 0.78
Structures of the Porphyromonas gingivalis OxyR regulatory domain explain differences in expression of the OxyR regulon in Escherichia coli and P. gingivalis. Acta Crystallogr D Biol Crystallogr (2013) 0.78
The Subtleties and Contrasts of the LeuO Regulator in Salmonella Typhi: Implications in the Immune Response. Front Immunol (2014) 0.78
Amino acid residues of RegA important for interactions with the CbbR-DNA complex of Rhodobacter sphaeroides. J Bacteriol (2014) 0.77
Crystallization and preliminary crystal structure analysis of the ligand-binding domain of PqsR (MvfR), the Pseudomonas quinolone signal (PQS) responsive quorum-sensing transcription factor of Pseudomonas aeruginosa. Acta Crystallogr Sect F Struct Biol Cryst Commun (2012) 0.77
Most mutant OccR proteins that are defective in positive control hold operator DNA in a locked high-angle bend. J Bacteriol (2011) 0.77
Transcriptional cross-regulation between Gram-negative and gram-positive bacteria, demonstrated using ArgP-argO of Escherichia coli and LysG-lysE of Corynebacterium glutamicum. J Bacteriol (2012) 0.77
Specificity of the E. coli LysR-type transcriptional regulators. PLoS One (2010) 0.77
Isolation and characterization of mutant Sinorhizobium meliloti NodD1 proteins with altered responses to luteolin. J Bacteriol (2013) 0.76
Purification, crystallization and preliminary X-ray analysis of the effector domain of AlsR, an LysR-type transcriptional regulator from Bacillus subtilis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2013) 0.75
Structure of the regulatory domain of the LysR family regulator NMB2055 (MetR-like protein) from Neisseria meningitidis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2012) 0.75
CbbR, the Master Regulator for Microbial Carbon Dioxide Fixation. J Bacteriol (2015) 0.75
The solution configurations of inactive and activated DntR have implications for the sliding dimer mechanism of LysR transcription factors. Sci Rep (2016) 0.75
Transcription factor-based biosensors enlightened by the analyte. Front Microbiol (2015) 0.75
Expression, purification, crystallization and preliminary X-ray analysis of the DNA-binding domain of Rhodobacter capsulatus MopB. Acta Crystallogr Sect F Struct Biol Cryst Commun (2011) 0.75
Purification and crystallization of a putative transcriptional regulator of the benzoate oxidation pathway in Burkholderia xenovorans LB400. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.75
High crystallizability under air-exclusion conditions of the full-length LysR-type transcriptional regulator TsaR from Comamonas testosteroni T-2 and data-set analysis for a MIRAS structure-solution approach. Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 0.75
Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4. Nature (2007) 3.19
Multifunctional Alloys Obtained via a Dislocation-Free Plastic Deformation Mechanism. Science (2003) 2.33
Tertiary structure-function analysis reveals the pathogenic signaling potentiation mechanism of Helicobacter pylori oncogenic effector CagA. Cell Host Microbe (2012) 1.72
Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1. J Mol Biol (2004) 1.62
Relationship between the structure of SET/TAF-Ibeta/INHAT and its histone chaperone activity. Proc Natl Acad Sci U S A (2007) 1.55
Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase. J Mol Biol (2002) 1.50
Crystal structure of a gamma-butyrolactone autoregulator receptor protein in Streptomyces coelicolor A3(2). J Mol Biol (2004) 1.44
Modulating cholesteryl ester transfer protein activity maintains efficient pre-β-HDL formation and increases reverse cholesterol transport. J Lipid Res (2010) 1.38
Soft synthesis of single-crystal silicon monolayer sheets. Angew Chem Int Ed Engl (2006) 1.32
Crystal structure of the radical SAM enzyme catalyzing tricyclic modified base formation in tRNA. J Mol Biol (2007) 1.25
Tolerance of the Rieske-type [2Fe-2S] cluster in recombinant ferredoxin BphA3 from Pseudomonas sp. KKS102 to histidine ligand mutations. Biochem J (2005) 1.23
Crystallization and preliminary X-ray analysis of the reduced Rieske-type [2Fe-2S] ferredoxin derived from Pseudomonas sp. strain KKS102. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 1.21
Crystallization and preliminary X-ray analysis of the Rieske-type [2Fe-2S] ferredoxin component of biphenyl dioxygenase from Pseudomonas sp. strain KKS102. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 1.16
Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction. Nucleic Acids Res (2006) 1.15
Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase complexed with cofactors: implications of a flexible loop movement upon substrate binding. J Biochem (2002) 1.10
Molecular mechanism of the redox-dependent interaction between NADH-dependent ferredoxin reductase and Rieske-type [2Fe-2S] ferredoxin. J Mol Biol (2007) 1.08
Oxygen affinity of hemoglobin regulates O2 consumption, metabolism, and physical activity. J Biol Chem (2002) 1.07
Structural basis for recognition of cognate tRNA by tyrosyl-tRNA synthetase from three kingdoms. Nucleic Acids Res (2007) 1.07
Aromatic residues within the substrate-binding cleft of Bacillus circulans chitinase A1 are essential for hydrolysis of crystalline chitin. Biochem J (2003) 1.06
Crystallization and preliminary X-ray analysis of the electron-transfer complex of Rieske-type [2Fe-2S] ferredoxin and NADH-dependent ferredoxin reductase derived from Acidovorax sp. strain KKS102. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 1.03
Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans. J Biol Chem (2011) 1.00
Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria. Appl Environ Microbiol (2004) 0.99
Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering. Angew Chem Int Ed Engl (2010) 0.98
Structural studies of a two-domain chitinase from Streptomyces griseus HUT6037. J Mol Biol (2006) 0.97
Comparison of enzymatic and antifungal properties between family 18 and 19 chitinases from S. coelicolor A3(2). Biosci Biotechnol Biochem (2006) 0.96
Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction. Proc Natl Acad Sci U S A (2010) 0.95
Hidden function of catalytic domain in 6-methylsalicylic acid synthase for product release. J Biol Chem (2010) 0.94
Differential expression of two catechol 1,2-dioxygenases in Burkholderia sp. strain TH2. J Bacteriol (2002) 0.91
Regulatory system of the protocatechuate 4,5-cleavage pathway genes essential for lignin downstream catabolism. J Bacteriol (2010) 0.90
Importance of exposed aromatic residues in chitinase B from Serratia marcescens 2170 for crystalline chitin hydrolysis. J Biochem (2004) 0.89
Relation between tRNase activity and the structure of colicin D according to X-ray crystallography. Biochem Biophys Res Commun (2004) 0.89
A survey of the cellular responses in Pseudomonas putida KT2440 growing in sterilized soil by microarray analysis. FEMS Microbiol Ecol (2011) 0.88
The dasABC gene cluster, adjacent to dasR, encodes a novel ABC transporter for the uptake of N,N'-diacetylchitobiose in Streptomyces coelicolor A3(2). Appl Environ Microbiol (2007) 0.86
Aspergillus oryzae type III polyketide synthase CsyA is involved in the biosynthesis of 3,5-dihydroxybenzoic acid. Bioorg Med Chem Lett (2010) 0.86
Detection of bphAa gene expression of Rhodococcus sp. strain RHA1 in soil using a new method of RNA preparation from soil. Biosci Biotechnol Biochem (2008) 0.85
Structure of full-length class I chitinase from rice revealed by X-ray crystallography and small-angle X-ray scattering. Proteins (2010) 0.85
The msiK gene, encoding the ATP-hydrolysing component of N,N'-diacetylchitobiose ABC transporters, is essential for induction of chitinase production in Streptomyces coelicolor A3(2). Microbiology (2008) 0.85
Purification, crystallization and preliminary X-ray diffraction analysis of human oncoprotein SET/TAF-1beta. Acta Crystallogr D Biol Crystallogr (2004) 0.84
Increased fat absorption and impaired fat clearance cause postprandial hypertriglyceridemia in Spontaneously Diabetic Torii rat. Diabetes Res Clin Pract (2007) 0.83
Crystallization of CprB, an autoregulator-receptor protein from Streptomyces coelicolor A3(2). Acta Crystallogr D Biol Crystallogr (2003) 0.83
Fungal type III polyketide synthases. Nat Prod Rep (2014) 0.82
Structure of full-length bacterial chitinase containing two fibronectin type III domains revealed by small angle X-ray scattering. Biochem Biophys Res Commun (2006) 0.82
Theoretical framework for the histone modification network: modifications in the unstructured histone tails form a robust scale-free network. Genes Cells (2009) 0.82
Direct observation of protein microcrystals in crystallization buffer by atmospheric scanning electron microscopy. Int J Mol Sci (2012) 0.82
Identification of the substrate interaction region of the chitin-binding domain of Streptomyces griseus chitinase C. J Biochem (2006) 0.82
Importance of Trp59 and Trp60 in chitin-binding, hydrolytic, and antifungal activities of Streptomyces griseus chitinase C. Appl Microbiol Biotechnol (2006) 0.82
Mutational analysis of the inducer recognition sites of the LysR-type transcriptional regulator TfdT of Burkholderia sp. NK8. Appl Microbiol Biotechnol (2009) 0.81
Crystallization and preliminary crystallographic analysis of a haloalkane dehalogenase, DbjA, from Bradyrhizobium japonicum USDA110. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.81
Molecular breeding of transgenic rice plants expressing a bacterial chlorocatechol dioxygenase gene. Appl Environ Microbiol (2002) 0.81
High expression levels of chitinase genes in Streptomyces coelicolor A3(2) grown in soil. FEMS Microbiol Ecol (2011) 0.80
Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney. J Biol Chem (2011) 0.80
Isolation of effective 3-chlorobenzoate-degraders in soil using community analyses by PCR-DGGE. Microbes Environ (2008) 0.80
Chitin-induced gene expression in secondary metabolic pathways of Streptomyces coelicolor A3(2) grown in soil. Appl Environ Microbiol (2012) 0.80
Single-turnover kinetics of 2,3-dihydroxybiphenyl 1,2-dioxygenase reacting with 3-formylcatechol. Biochem Biophys Res Commun (2005) 0.79
Isolation and structural determination of a new macrolide, makinolide, from the newly isolated Streptomyces sp. MK-30. J Antibiot (Tokyo) (2012) 0.79
Crystallization of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1. Protein Pept Lett (2003) 0.79
Crystallization and preliminary x-ray crystallographic analysis of galectin LEC-1 from Caenorhabditis elegans. Protein Pept Lett (2008) 0.79
Photocontrolled translational motion of a microscale solid object on azobenzene-doped liquid-crystalline films. Angew Chem Int Ed Engl (2009) 0.79
Roles of the beta subunit hinge domain in ATP synthase F(1) sector: hydrophobic network formed by introduced betaPhe174 inhibits subunit rotation. Biochem Biophys Res Commun (2010) 0.79
Effects of mutations in the beta subunit hinge domain on ATP synthase F1 sector rotation: interaction between Ser 174 and Ile 163. Biochem Biophys Res Commun (2007) 0.79
Crystal structure of Methanococcus jannaschii TATA box-binding protein. Genes Cells (2008) 0.78
Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations. J Mol Recognit (2011) 0.77
Surface loops of extracellular phospholipase A(1) determine both substrate specificity and preference for lysophospholipids. J Lipid Res (2011) 0.77
Three-dimensional structure of the ternary complex of yeast tyrosyl-tRNA synthetase. Nucleic Acids Symp Ser (Oxf) (2004) 0.77
Purification and crystallization of a LysR-type transcriptional regulator CBNR from Ralstonia eutropha NH9. Protein Pept Lett (2003) 0.77
DNA-binding protein involved in the regulation of chitinase production in Streptomyces lividans. Biosci Biotechnol Biochem (2005) 0.77
Specific gene responses of Rhodococcus jostii RHA1 during growth in soil. Appl Environ Microbiol (2012) 0.77
Amino acids in positions 48, 52, and 73 differentiate the substrate specificities of the highly homologous chlorocatechol 1,2-dioxygenases CbnA and TcbC. J Bacteriol (2005) 0.77
Microbial genes and enzymes in the degradation of chlorinated compounds. Chem Rec (2003) 0.77
Crystallization and preliminary crystallographic analysis of D-serine dehydratase from chicken kidney. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.77
Structural insights into catalysis by βC-S lyase from Streptococcus anginosus. Proteins (2012) 0.77
SaxsMDView: a three-dimensional graphics program for displaying force vectors. J Synchrotron Radiat (2008) 0.77
Crystallization and preliminary crystallographic analysis of gallate dioxygenase DesB from Sphingobium sp. SYK-6. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.77
Structural basis of the γ-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase. PLoS One (2013) 0.76
Role of the loop structure of the catalytic domain in rice class I chitinase. J Biochem (2008) 0.76
A 2,4-dichlorophenoxyacetic acid degradation plasmid pM7012 discloses distribution of an unclassified megaplasmid group across bacterial species. Microbiology (2014) 0.76
Identification of a second, non-conserved amino acid that contributes to the unique sugar binding properties of the nematode galectin LEC-1. Biol Pharm Bull (2008) 0.76
Roles of histone chaperone CIA/Asf1 in nascent DNA elongation during nucleosome replication. Genes Cells (2011) 0.76
Identification of the gene for disaggregatase from Methanosarcina mazei. Archaea (2008) 0.76
Crystallization and preliminary X-ray crystallographic analysis of the inhibitory domain of the tomato mosaic virus resistance protein Tm-1. Acta Crystallogr Sect F Struct Biol Cryst Commun (2013) 0.76
Crystallization and preliminary crystallographic analysis of DtsR1, a carboxyltransferase subunit of acetyl-CoA carboxylase from Corynebacterium glutamicum. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.75
Effect of leucine-to-methionine substitutions on the diffraction quality of histone chaperone SET/TAF-Ibeta/INHAT crystals. Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 0.75
Crystallization and preliminary crystallographic analysis of manganese(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from Bacillus sp. JF8. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.75
Crystallization and preliminary crystallographic analysis of D-aspartate oxidase from porcine kidney. Acta Crystallogr Sect F Struct Biol Cryst Commun (2012) 0.75
Identification of the amino acid residue in the nematode galectin LEC-1 responsible for its unique sugar binding property: analysis by combination of site-directed mutagenesis and frontal affinity chromatography. Biol Pharm Bull (2007) 0.75
Crystallization and preliminary crystallographic analysis of the catechol 2,3-dioxygenase PheB from Bacillus stearothermophilus BR219. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.75
Crystallization and preliminary X-ray analysis of betaC-S lyases from two oral Streptococci. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.75
Crystallization and preliminary X-ray crystallographic analysis of human autotaxin. Acta Crystallogr Sect F Struct Biol Cryst Commun (2011) 0.75
Crystallization and preliminary X-ray crystallographic studies of an exo-beta-D-glucosaminidase from Trichoderma reesei. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.75
Purification, crystallization and preliminary X-ray analysis of a deletion mutant of a major buckwheat allergen. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.75