Published in J Mol Biol on May 02, 2003
Catalytic mechanism of heparinase II investigated by site-directed mutagenesis and the crystal structure with its substrate. J Biol Chem (2010) 1.00
Chondroitinase ABC I from Proteus vulgaris: cloning, recombinant expression and active site identification. Biochem J (2005) 0.99
The Quantification of Glycosaminoglycans: A Comparison of HPLC, Carbazole, and Alcian Blue Methods. Open Glycosci (2008) 0.96
A 3D-structural model of unsulfated chondroitin from high-field NMR: 4-sulfation has little effect on backbone conformation. Carbohydr Res (2009) 0.95
The K5 lyase KflA combines a viral tail spike structure with a bacterial polysaccharide lyase mechanism. J Biol Chem (2010) 0.95
Biochemical characterization of the chondroitinase ABC I active site. Biochem J (2005) 0.95
CS lyases: structure, activity, and applications in analysis and the treatment of diseases. Adv Pharmacol (2006) 0.93
Expression during host infection and localization of Yersinia pestis autotransporter proteins. J Bacteriol (2011) 0.93
Modification of N-glycosylation sites allows secretion of bacterial chondroitinase ABC from mammalian cells. J Biotechnol (2009) 0.90
Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events. Bioinformatics (2012) 0.88
Liquid chromatography-mass spectrometry to study chondroitin lyase action pattern. Anal Biochem (2008) 0.85
Sialidase, chondroitinase ABC, and combination therapy after spinal cord contusion injury. J Neurotrauma (2013) 0.84
Recombinant expression, purification, and biochemical characterization of chondroitinase ABC II from Proteus vulgaris. J Biol Chem (2008) 0.79
Contact Statistics Highlight Distinct Organizing Principles of Proteins and RNA. Biophys J (2016) 0.78
Sustained Delivery of Chondroitinase ABC from Hydrogel System. J Funct Biomater (2012) 0.75
Uncovering the Catalytic Direction of Chondroitin AC Exolyase: FROM THE REDUCING END TOWARDS THE NON-REDUCING END. J Biol Chem (2016) 0.75
Functional role of R462 in the degradation of hyaluronan catalyzed by hyaluronate lyase from Streptococcus pneumoniae. J Mol Model (2015) 0.75
Revealing nature's cellulase diversity: the digestion mechanism of Caldicellulosiruptor bescii CelA. Science (2013) 3.51
Structural basis for Fe-S cluster assembly and tRNA thiolation mediated by IscS protein-protein interactions. PLoS Biol (2010) 2.60
Structural biology of human H3K9 methyltransferases. PLoS One (2010) 2.45
Bacterial polysaccharide co-polymerases share a common framework for control of polymer length. Nat Struct Mol Biol (2008) 2.19
The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering. Cell (2006) 2.10
Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP. Nat Struct Biol (2002) 2.09
The structural genomics experimental pipeline: insights from global target lists. Proteins (2004) 1.98
Keratan sulfate restricts neural plasticity after spinal cord injury. J Neurosci (2011) 1.63
Crystal structure of heparinase II from Pedobacter heparinus and its complex with a disaccharide product. J Biol Chem (2006) 1.55
Genetic selection designed to stabilize proteins uncovers a chaperone called Spy. Nat Struct Mol Biol (2011) 1.52
The structure of the RlmB 23S rRNA methyltransferase reveals a new methyltransferase fold with a unique knot. Structure (2002) 1.47
Structural and mechanistic classification of uronic acid-containing polysaccharide lyases. Glycobiology (2010) 1.42
The structure of the MAPK scaffold, MP1, bound to its partner, p14. A complex with a critical role in endosomal map kinase signaling. J Biol Chem (2004) 1.38
Structural and functional characterization of PseC, an aminotransferase involved in the biosynthesis of pseudaminic acid, an essential flagellar modification in Helicobacter pylori. J Biol Chem (2006) 1.36
Crystal structure of the bb' domains of the protein disulfide isomerase ERp57. Structure (2006) 1.33
Transcriptome-based systematic identification of extracellular matrix proteins. Proc Natl Acad Sci U S A (2008) 1.31
Structural snapshots of Escherichia coli histidinol phosphate phosphatase along the reaction pathway. J Biol Chem (2006) 1.30
Molecular cloning and characterization of chondroitin polymerase from Escherichia coli strain K4. J Biol Chem (2002) 1.24
The structure of chondroitin B lyase complexed with glycosaminoglycan oligosaccharides unravels a calcium-dependent catalytic machinery. J Biol Chem (2004) 1.23
Glyoxylate and pyruvate are antagonistic effectors of the Escherichia coli IclR transcriptional regulator. J Biol Chem (2007) 1.22
Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities. J Biol Chem (2003) 1.19
Crystal structure of Escherichia coli glucose-1-phosphate thymidylyltransferase (RffH) complexed with dTTP and Mg2+. J Biol Chem (2002) 1.17
Lectin control of protein folding and sorting in the secretory pathway. Trends Biochem Sci (2003) 1.17
Identification of an Escherichia coli O157:H7 heme oxygenase with tandem functional repeats. Proc Natl Acad Sci U S A (2005) 1.14
Sequence-structure relationships in polysaccharide co-polymerase (PCP) proteins. Trends Biochem Sci (2008) 1.14
High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism. J Mol Biol (2004) 1.14
Molecular dynamics-solvated interaction energy studies of protein-protein interactions: the MP1-p14 scaffolding complex. J Mol Biol (2008) 1.13
Crystal structure of chondroitin polymerase from Escherichia coli K4. Biochem Biophys Res Commun (2008) 1.13
Crystal structure of a dodecameric FMN-dependent UbiX-like decarboxylase (Pad1) from Escherichia coli O157: H7. Protein Sci (2004) 1.13
Crystal structures of Escherichia coli ATP-dependent glucokinase and its complex with glucose. J Bacteriol (2004) 1.09
Essential roles of zinc ligation and enzyme dimerization for catalysis in the aminoacylase-1/M20 family. J Biol Chem (2003) 1.08
Design of a data model for developing laboratory information management and analysis systems for protein production. Proteins (2005) 1.06
Structural characterization of GntR/HutC family signaling domain. Protein Sci (2006) 1.05
Cloning, Baeyer-Villiger biooxidations, and structures of the camphor pathway 2-oxo-Δ(3)-4,5,5-trimethylcyclopentenylacetyl-coenzyme A monooxygenase of Pseudomonas putida ATCC 17453. Appl Environ Microbiol (2012) 1.05
Structure and active site residues of PglD, an N-acetyltransferase from the bacillosamine synthetic pathway required for N-glycan synthesis in Campylobacter jejuni. Biochemistry (2008) 1.04
The crystal structure of CREG, a secreted glycoprotein involved in cellular growth and differentiation. Proc Natl Acad Sci U S A (2005) 1.02
Structure-function analysis of Escherichia coli MnmG (GidA), a highly conserved tRNA-modifying enzyme. J Bacteriol (2009) 1.02
Structural and biochemical characterization of the type II fructose-1,6-bisphosphatase GlpX from Escherichia coli. J Biol Chem (2008) 1.00
Catalytic mechanism of heparinase II investigated by site-directed mutagenesis and the crystal structure with its substrate. J Biol Chem (2010) 1.00
The chondroitin polymerase K4CP and the molecular mechanism of selective bindings of donor substrates to two active sites. J Biol Chem (2008) 1.00
Structure of the noncatalytic domains and global fold of the protein disulfide isomerase ERp72. Structure (2009) 1.00
Design of noncovalent inhibitors of human cathepsin L. From the 96-residue proregion to optimized tripeptides. J Med Chem (2002) 0.98
The structure of the exopolyphosphatase (PPX) from Escherichia coli O157:H7 suggests a binding mode for long polyphosphate chains. J Mol Biol (2006) 0.98
Crystal structure of the RluD pseudouridine synthase catalytic module, an enzyme that modifies 23S rRNA and is essential for normal cell growth of Escherichia coli. J Mol Biol (2004) 0.97
Identification and characterization of photomedins: novel olfactomedin-domain-containing proteins with chondroitin sulphate-E-binding activity. Biochem J (2005) 0.96
Crystal structure of D-ribose-5-phosphate isomerase (RpiA) from Escherichia coli. Proteins (2002) 0.96
Structural context for protein N-glycosylation in bacteria: The structure of PEB3, an adhesin from Campylobacter jejuni. Protein Sci (2007) 0.96
Crystal structure of a trimeric form of dephosphocoenzyme A kinase from Escherichia coli. Protein Sci (2003) 0.95
Improvement of the thermostability and activity of a pectate lyase by single amino acid substitutions, using a strategy based on melting-temperature-guided sequence alignment. Appl Environ Microbiol (2007) 0.94
Characterization of interactions between LPS transport proteins of the Lpt system. Biochem Biophys Res Commun (2010) 0.93
CS lyases: structure, activity, and applications in analysis and the treatment of diseases. Adv Pharmacol (2006) 0.93
Crystal structure of StaL, a glycopeptide antibiotic sulfotransferase from Streptomyces toyocaensis. J Biol Chem (2007) 0.93
Crystal structure of Methanobacterium thermoautotrophicum phosphoribosyl-AMP cyclohydrolase HisI. Biochemistry (2005) 0.93
Structural snapshots of heparin depolymerization by heparin lyase I. J Biol Chem (2009) 0.92
Site-directed mutagenesis of the active site region in the quinate/shikimate 5-dehydrogenase YdiB of Escherichia coli. J Biol Chem (2004) 0.92
Specificity of Campylobacter jejuni adhesin PEB3 for phosphates and structural differences among its ligand complexes. Biochemistry (2009) 0.92
Crystal structure of Escherichia coli PdxA, an enzyme involved in the pyridoxal phosphate biosynthesis pathway. J Biol Chem (2003) 0.91
Crystal structures of apo and metal-bound forms of the UreE protein from Helicobacter pylori: role of multiple metal binding sites. Biochemistry (2010) 0.90
The long-chain fatty acid sensor, PsrA, modulates the expression of rpoS and the type III secretion exsCEBA operon in Pseudomonas aeruginosa. Mol Microbiol (2009) 0.90
Structure of hydrogenase maturation protein HypF with reaction intermediates shows two active sites. Structure (2011) 0.90
Structure and function of the glycopeptide N-methyltransferase MtfA, a tool for the biosynthesis of modified glycopeptide antibiotics. Chem Biol (2009) 0.90
Antiviral activity of chondroitin sulphate E targeting dengue virus envelope protein. Antiviral Res (2010) 0.90
Crystal structure of the YciO protein from Escherichia coli. Proteins (2002) 0.90
Crystal structure of Escherichia coli crotonobetainyl-CoA: carnitine CoA-transferase (CaiB) and its complexes with CoA and carnitinyl-CoA. Biochemistry (2005) 0.90
Biochemical and crystallographic studies reveal a specific interaction between TRAPP subunits Trs33p and Bet3p. Traffic (2005) 0.90
Structural and functional studies of the Escherichia coli phenylacetyl-CoA monooxygenase complex. J Biol Chem (2011) 0.89
Activin A binds to perlecan through its pro-region that has heparin/heparan sulfate binding activity. J Biol Chem (2010) 0.89
The unique binding mode of cellulosomal CBM4 from Clostridium thermocellum cellobiohydrolase A. J Mol Biol (2010) 0.88
Specificity determinants of human cathepsin s revealed by crystal structures of complexes. Biochemistry (2003) 0.88
Structure-guided investigation of lipopolysaccharide O-antigen chain length regulators reveals regions critical for modal length control. J Bacteriol (2011) 0.87
Binding the atypical RA domain of Ste50p to the unfolded Opy2p cytoplasmic tail is essential for the high-osmolarity glycerol pathway. Mol Biol Cell (2009) 0.86
Insights into function of PSI domains from structure of the Met receptor PSI domain. Biochem Biophys Res Commun (2004) 0.86
Mechanism of action and NAD+-binding mode revealed by the crystal structure of L-histidinol dehydrogenase. Proc Natl Acad Sci U S A (2002) 0.86
Structure of a fibronectin type III-like module from Clostridium thermocellum. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.86
Application of dynamic light scattering in protein crystallization. Curr Protoc Protein Sci (2010) 0.85
Domain organization and crystal structure of the catalytic domain of E.coli RluF, a pseudouridine synthase that acts on 23S rRNA. J Mol Biol (2006) 0.85
Polysaccharide co-polymerases: the enigmatic conductors of the O-antigen assembly orchestra. Protein Eng Des Sel (2012) 0.85
Liquid chromatography-mass spectrometry to study chondroitin lyase action pattern. Anal Biochem (2008) 0.85
Coverage of protein sequence space by current structural genomics targets. J Struct Funct Genomics (2003) 0.84
Structure of [NiFe] hydrogenase maturation protein HypE from Escherichia coli and its interaction with HypF. J Bacteriol (2007) 0.84
Trapping open and closed forms of FitE: a group III periplasmic binding protein. Proteins (2009) 0.84