Published in Cell Cycle on July 09, 2003
The SET-domain protein superfamily: protein lysine methyltransferases. Genome Biol (2005) 3.93
Natural history of S-adenosylmethionine-binding proteins. BMC Struct Biol (2005) 1.85
Structure and site-specific recognition of histone H3 by the PHD finger of human autoimmune regulator. Structure (2009) 1.35
Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes. PLoS One (2008) 1.29
SET8-mediated methylations of histone H4 lysine 20 mark silent heterochromatic domains in apicomplexan genomes. Mol Cell Biol (2007) 1.17
Bioinformatic Identification of Novel Methyltransferases. Epigenomics (2009) 1.01
Dimerization of a viral SET protein endows its function. Proc Natl Acad Sci U S A (2010) 0.89
Anthrax SET protein: a potential virulence determinant that epigenetically represses NF-κB activation in infected macrophages. J Biol Chem (2013) 0.83
Bacterial SET domain proteins and their role in eukaryotic chromatin modification. Front Genet (2014) 0.80
A cytoplasm-specific activity encoded by the Trithorax-like ATX1 gene. Nucleic Acids Res (2011) 0.76
Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions. BMC Bioinformatics (2015) 0.75
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science (2009) 32.97
The many faces of the helix-turn-helix domain: transcription regulation and beyond. FEMS Microbiol Rev (2005) 3.87
Diversity and function of adaptive immune receptors in a jawless vertebrate. Science (2005) 3.39
Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains. Nucleic Acids Res (2005) 3.36
Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase. Nat Immunol (2007) 3.14
Plasmodium biology: genomic gleanings. Cell (2003) 2.89
Identification of the prokaryotic ligand-gated ion channels and their implications for the mechanisms and origins of animal Cys-loop ion channels. Genome Biol (2004) 2.39
Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast. J Mol Biol (2006) 2.36
Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system. Genome Res (2001) 2.19
Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily. Nucleic Acids Res (2002) 2.08
Discovery of Novel DENN Proteins: Implications for the Evolution of Eukaryotic Intracellular Membrane Structures and Human Disease. Front Genet (2012) 2.08
Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics. Biol Direct (2012) 2.05
Comparative analysis of apicomplexa and genomic diversity in eukaryotes. Genome Res (2004) 1.71
Guilt by association: contextual information in genome analysis. Genome Res (2000) 1.65
The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons. Nucleic Acids Res (2006) 1.62
Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen. Nat Struct Mol Biol (2009) 1.55
Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks. J Mol Biol (2006) 1.52
The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism. Genome Biol (2003) 1.45
A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems. Nucleic Acids Res (2011) 1.41
Comparative genomics and structural biology of the molecular innovations of eukaryotes. Curr Opin Struct Biol (2006) 1.36
A multidomain adhesion protein family expressed in Plasmodium falciparum is essential for transmission to the mosquito. J Exp Med (2004) 1.33
A hemolytic pigment of Group B Streptococcus allows bacterial penetration of human placenta. J Exp Med (2013) 1.31
Small but versatile: the extraordinary functional and structural diversity of the beta-grasp fold. Biol Direct (2007) 1.31
Natural history of the E1-like superfamily: implication for adenylation, sulfur transfer, and ubiquitin conjugation. Proteins (2009) 1.20
A structural basis for antigen recognition by the T cell-like lymphocytes of sea lamprey. Proc Natl Acad Sci U S A (2010) 1.20
Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation. J Struct Biol (2008) 1.19
The HARE-HTH and associated domains: novel modules in the coordination of epigenetic DNA and protein modifications. Cell Cycle (2012) 1.14
BEN: a novel domain in chromatin factors and DNA viral proteins. Bioinformatics (2008) 1.14
Bacterial GRAS domain proteins throw new light on gibberellic acid response mechanisms. Bioinformatics (2012) 1.13
The SWIRM domain: a conserved module found in chromosomal proteins points to novel chromatin-modifying activities. Genome Biol (2002) 1.13
Comparative genomics of protists: new insights into the evolution of eukaryotic signal transduction and gene regulation. Annu Rev Microbiol (2007) 1.12
Adhesion molecules and other secreted host-interaction determinants in Apicomplexa: insights from comparative genomics. Int Rev Cytol (2007) 1.10
Functional diversification of the RING finger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system. Mol Biosyst (2011) 1.08
HPC2 and ubinuclein define a novel family of histone chaperones conserved throughout eukaryotes. Mol Biosyst (2009) 1.07
Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains. Biol Direct (2010) 1.07
Domain architectures of the Scm3p protein provide insights into centromere function and evolution. Cell Cycle (2007) 1.06
A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain. Genome Biol (2004) 1.05
Gene flow and biological conflict systems in the origin and evolution of eukaryotes. Front Cell Infect Microbiol (2012) 1.04
Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis. Biol Direct (2010) 1.01
Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing. Mol Biosyst (2012) 1.00
Natural history of the eukaryotic chromatin protein methylation system. Prog Mol Biol Transl Sci (2011) 0.99
Structure and evolution of ubiquitin and ubiquitin-related domains. Methods Mol Biol (2012) 0.97
Diversity and evolution of chromatin proteins encoded by DNA viruses. Biochim Biophys Acta (2009) 0.94
Assessment of penetrance and expressivity of RNAi-mediated silencing of the Arabidopsis phytoene desaturase gene. New Phytol (2005) 0.92
Reconstructing the ubiquitin network: cross-talk with other systems and identification of novel functions. Genome Biol (2009) 0.92
A TET homologue protein from Coprinopsis cinerea (CcTET) that biochemically converts 5-methylcytosine to 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxylcytosine. J Am Chem Soc (2014) 0.90
A novel superfamily containing the beta-grasp fold involved in binding diverse soluble ligands. Biol Direct (2007) 0.90
Comparison of transcription regulatory interactions inferred from high-throughput methods: what do they reveal? Trends Genet (2008) 0.90
Estimating the prevalence and regulatory potential of the telomere looping effect in yeast transcription regulation. Cell Cycle (2006) 0.86
The natural history of ubiquitin and ubiquitin-related domains. Front Biosci (Landmark Ed) (2012) 0.85
Apprehending multicellularity: regulatory networks, genomics, and evolution. Birth Defects Res C Embryo Today (2009) 0.84
Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes. Biol Direct (2013) 0.83
Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems. Biol Direct (2013) 0.81
Gene networks and chromatin and transcriptional regulation of the phaseolin promoter in Arabidopsis. Plant Cell (2013) 0.79
The natural history of ADP-ribosyltransferases and the ADP-ribosylation system. Curr Top Microbiol Immunol (2015) 0.79
The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains. Biol Direct (2009) 0.78
Intraproteomic networks: new forays into predicting interaction partners. Genome Res (2002) 0.75