Published in J Biol Chem on July 09, 2003
Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. J Bacteriol (2005) 4.86
SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences. J Bacteriol (2004) 2.17
Analysis of promoter elements involved in the transcriptional initiation of RpoS-dependent Borrelia burgdorferi genes. J Bacteriol (2004) 1.35
Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species. BMC Genomics (2008) 1.17
Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases. Nucleic Acids Res (2004) 1.15
Borrelia burgdorferi bba74 is expressed exclusively during tick feeding and is regulated by both arthropod- and mammalian host-specific signals. J Bacteriol (2009) 1.14
In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements. Nucleic Acids Res (2011) 1.07
Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant. Funct Integr Genomics (2007) 0.85
Expression of magA in Legionella pneumophila Philadelphia-1 is developmentally regulated and a marker of formation of mature intracellular forms. J Bacteriol (2004) 0.85
Specific DNA binding and regulation of its own expression by the AidB protein in Escherichia coli. J Bacteriol (2010) 0.83
Characterization of the Escherichia coli σ(S) core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis. Sci Rep (2015) 0.82
Transcription regulation of the Escherichia coli pcnB gene coding for poly(A) polymerase I: roles of ppGpp, DksA and sigma factors. Mol Genet Genomics (2010) 0.78
SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences. J Bacteriol (2004) 2.17
The curli biosynthesis regulator CsgD co-ordinates the expression of both positive and negative determinants for biofilm formation in Escherichia coli. Microbiology (2003) 1.42
Gene expression regulation by the Curli activator CsgD protein: modulation of cellulose biosynthesis and control of negative determinants for microbial adhesion. J Bacteriol (2006) 1.29
An unusual primary sigma factor in the Bacteroidetes phylum. Mol Microbiol (2005) 1.23
The transcriptional antiterminator RfaH represses biofilm formation in Escherichia coli. J Bacteriol (2006) 1.21
Cellulose modulates biofilm formation by counteracting curli-mediated colonization of solid surfaces in Escherichia coli. Microbiology (2008) 1.14
Crl activates transcription initiation of RpoS-regulated genes involved in the multicellular behavior of Salmonella enterica serovar Typhimurium. J Bacteriol (2006) 1.12
In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements. Nucleic Acids Res (2011) 1.07
Mass spectrometry of Escherichia coli RNA polymerase: interactions of the core enzyme with sigma70 and Rsd protein. Structure (2004) 1.06
Physiological effects of Crl in Salmonella are modulated by sigmaS level and promoter specificity. J Bacteriol (2007) 1.03
Monitoring of diguanylate cyclase activity and of cyclic-di-GMP biosynthesis by whole-cell assays suitable for high-throughput screening of biofilm inhibitors. Appl Microbiol Biotechnol (2009) 1.03
Biofilm formation-gene expression relay system in Escherichia coli: modulation of sigmaS-dependent gene expression by the CsgD regulatory protein via sigmaS protein stabilization. J Bacteriol (2007) 1.02
Growth in glucose-based medium and exposure to subinhibitory concentrations of imipenem induce biofilm formation in a multidrug-resistant clinical isolate of Acinetobacter baumannii. BMC Microbiol (2009) 1.02
Emergence of biofilm-forming subpopulations upon exposure of Escherichia coli to environmental bacteriophages. Appl Environ Microbiol (2006) 1.01
Interplay between CRP-cAMP and PII-Ntr systems forms novel regulatory network between carbon metabolism and nitrogen assimilation in Escherichia coli. Nucleic Acids Res (2007) 1.00
DNA supercoiling contributes to disconnect sigmaS accumulation from sigmaS-dependent transcription in Escherichia coli. Mol Microbiol (2003) 0.98
Studies of the Escherichia coli Rsd-sigma70 complex. J Mol Biol (2004) 0.98
Protein-induced DNA bending clarifies the architectural organization of the sigma54-dependent glnAp2 promoter. Mol Microbiol (2006) 0.95
Binding sites of VanRB and sigma70 RNA polymerase in the vanB vancomycin resistance operon of Enterococcus faecium BM4524. Mol Microbiol (2005) 0.95
The Escherichia coli regulator of sigma 70 protein, Rsd, can up-regulate some stress-dependent promoters by sequestering sigma 70. J Bacteriol (2007) 0.93
Molecular determinants of the hpa regulatory system of Escherichia coli: the HpaR repressor. Nucleic Acids Res (2003) 0.92
Biofilm formation by Escherichia coli is stimulated by synergistic interactions and co-adhesion mechanisms with adherence-proficient bacteria. Res Microbiol (2005) 0.92
Transcription regulation coupling of the divergent argG and metY promoters in Escherichia coli K-12. J Bacteriol (2003) 0.90
Binding of the unorthodox transcription activator, Crl, to the components of the transcription machinery. J Biol Chem (2008) 0.90
The pyrimidine nucleotide biosynthetic pathway modulates production of biofilm determinants in Escherichia coli. PLoS One (2012) 0.87
IHF-binding sites inhibit DNA loop formation and transcription initiation. Nucleic Acids Res (2009) 0.87
Preferential DNA damage prevention by the E. coli AidB gene: A new mechanism for the protection of specific genes. DNA Repair (Amst) (2011) 0.86
The interaction between sigmaS, the stationary phase sigma factor, and the core enzyme of Escherichia coli RNA polymerase. Genes Cells (2002) 0.86
The diguanylate cyclase YddV controls production of the exopolysaccharide poly-N-acetylglucosamine (PNAG) through regulation of the PNAG biosynthetic pgaABCD operon. Microbiology (2010) 0.85
A proteomic analysis reveals differential regulation of the σ(S)-dependent yciGFE(katN) locus by YncC and H-NS in Salmonella and Escherichia coli K-12. Mol Cell Proteomics (2010) 0.84
Regulatory components at the csgD promoter--additional roles for OmpR and integration host factor and role of the 5' untranslated region. FEMS Microbiol Lett (2006) 0.84
Characterization of regulatory element Rp3 of regulation of beta-lactamases from Ralstonia pickettii. FEMS Microbiol Lett (2009) 0.83
Specific DNA binding and regulation of its own expression by the AidB protein in Escherichia coli. J Bacteriol (2010) 0.83
Crl binds to domain 2 of σ(S) and confers a competitive advantage on a natural rpoS mutant of Salmonella enterica serovar Typhi. J Bacteriol (2010) 0.83
Effects of chronic sub-lethal oxidative stress on biofilm formation by Azotobacter vinelandii. Biofouling (2012) 0.82
The RNA processing enzyme polynucleotide phosphorylase negatively controls biofilm formation by repressing poly-N-acetylglucosamine (PNAG) production in Escherichia coli C. BMC Microbiol (2012) 0.82
The yddV-dos operon controls biofilm formation through the regulation of genes encoding curli fibers' subunits in aerobically growing Escherichia coli. FEMS Immunol Med Microbiol (2010) 0.82
Interactions between the 2.4 and 4.2 regions of sigmaS, the stress-specific sigma factor of Escherichia coli, and the -10 and -35 promoter elements. Nucleic Acids Res (2004) 0.81
The immunosuppressive drug azathioprine inhibits biosynthesis of the bacterial signal molecule cyclic-di-GMP by interfering with intracellular nucleotide pool availability. Appl Microbiol Biotechnol (2013) 0.81
Identification of conserved amino acid residues of the Salmonella sigmaS chaperone Crl involved in Crl-sigmaS interactions. J Bacteriol (2009) 0.81
Phage T4 early promoters are resistant to inhibition by the anti-sigma factor AsiA. Mol Microbiol (2004) 0.80
The role of FIS protein in the physiological control of the expression of the Escherichia coli meta-hpa operon. Microbiology (2008) 0.80
FIS activates glnAp2 in Escherichia coli: role of a DNA bend centered at -55, upstream of the transcription start site. FEMS Microbiol Lett (2006) 0.79
Effect of growth temperature on Crl-dependent regulation of sigmaS activity in Salmonella enterica serovar Typhimurium. J Bacteriol (2008) 0.79
Mechanism of specific recognition of the aidB promoter by sigma(S)-RNA polymerase. Biochem Biophys Res Commun (2002) 0.79
Sulfate assimilation pathway intermediate phosphoadenosine 59-phosphosulfate acts as a signal molecule affecting production of curli fibres in Escherichia coli. Microbiology (2014) 0.78
Substitutions in region 2.4 of sigma70 allow recognition of the sigmaS-dependent aidB promoter. J Biol Chem (2004) 0.77
Microbiological methods for target-oriented screening of biofilm inhibitors. Methods Mol Biol (2014) 0.75
Probing the importance of selected phylum-specific amino acids in sigma A of Bacteroides fragilis, a primary sigma factor naturally devoid of an N-terminal acidic region 1.1. J Biol Chem (2006) 0.75
Evaluation of bioanalytical assays for toxicity assessment and mode of toxic action classification of reactive chemicals. Environ Sci Technol (2003) 0.75
Assays for transcription factor activity. Methods Mol Biol (2009) 0.75