Unique actinomycin D binding to self-complementary d(CXYGGCCY'X'G) sequences: duplex disruption and binding to a nominally base-paired hairpin.

PubWeight™: 0.78‹?›

🔗 View Article (PMC 167638)

Published in Nucleic Acids Res on July 15, 2003

Authors

Fu-Ming Chen1, Feng Sha, Ko-Hsin Chin, Shan-Ho Chou

Author Affiliations

1: Department of Chemistry, Tennessee State University, Nashville, TN 37209-1561, USA. fchen@tnstate.edu

Articles cited by this

Studies of the binding of actinomycin and related compounds to DNA. J Mol Biol (1968) 3.35

Stereochemistry of actinomycin binding to DNA. II. Detailed molecular model of actinomycin-DNA complex and its implications. J Mol Biol (1972) 2.31

Crystal structure of the 2:1 complex between d(GAAGCTTC) and the anticancer drug actinomycin D. J Mol Biol (1992) 1.27

Actinomycin D binding to single-stranded DNA: sequence specificity and hemi-intercalation model from fluorescence and 1H NMR spectroscopy. J Mol Biol (1996) 1.11

Association of actinomycin D and deoxyribodinucleotides as a model for binding of the drug to DNA. Proc Natl Acad Sci U S A (1972) 1.11

Binding of actinomycin D to DNA: evidence for a nonclassical high-affinity binding mode that does not require GpC sites. Proc Natl Acad Sci U S A (1989) 1.10

Binding specificities of actinomycin D to self-complementary tetranucleotide sequences -XGCY-. Biochemistry (1988) 1.04

Actinomycin D binds to metastable hairpins in single-stranded DNA. Biochemistry (1998) 1.03

Sequence-specific actinomycin D binding to single-stranded DNA inhibits HIV reverse transcriptase and other polymerases. Biochemistry (1996) 1.03

Actinomycin D and 7-aminoactinomycin D binding to single-stranded DNA. Biochemistry (1991) 1.02

Binding of actinomycin D to the T(G)nT motif of double-stranded DNA: determination of the guanine requirement in nonclassical, non-GpC binding sites. Biochemistry (1994) 1.01

7-Azido-actinomycin D: a photoaffinity probe of the sequence specificity of DNA binding by actinomycin D. J Biomol Struct Dyn (1989) 0.95

Looped out and perpendicular: deformation of Watson-Crick base pair associated with actinomycin D binding. Proc Natl Acad Sci U S A (2002) 0.95

Studies of non-covalent interactions of actinomycin D with single-stranded oligodeoxynucleotides by ion spray mass spectrometry and tandem mass spectrometry. Biol Mass Spectrom (1994) 0.95

Actinomycin D-deoxydinucleotide interactions as a model for binding of the drug to deoxyribonucleic acid. Proton magnetic resonance results. Biochemistry (1973) 0.94

Binding specificities of actinomycin D to non-self-complementary -XGCY-tetranucleotide sequences. Biochemistry (1992) 0.94

Actinomycin D binds strongly to d(TGTCATTG), a single-stranded DNA devoid of GpC sites. Biochemistry (2001) 0.90

Binding of actinomycin D to single-stranded DNA of sequence motifs d(TGTCT(n)G) and d(TGT(n)GTCT). Biophys J (2003) 0.85

Actinomycin D binds strongly to d(CGACGACG) and d(CGTCGTCG). Biophys J (2000) 0.84

Actinomycin D binding to unstructured, single-stranded DNA. J Mol Recognit (2001) 0.82

Actinomycin D binds to d(TGTCATG) with 2:1 drug to duplex stoichiometry. Biochemistry (2002) 0.81

Observation of an anomalously slow association kinetics in the binding of actinomycin D to d(CATGGCCATG). Biochemistry (1990) 0.81

Articles by these authors

The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris. J Mol Biol (2009) 1.78

Phosphatidylinositol 3-kinase signaling determines kidney size. J Clin Invest (2015) 1.46

Renal epithelium regulates erythropoiesis via HIF-dependent suppression of erythropoietin. J Clin Invest (2016) 1.42

Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of XC847, a 3'-5' oligoribonuclease from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 1.19

Unusual DNA duplex and hairpin motifs. Nucleic Acids Res (2003) 1.08

A cyclic GMP-dependent signalling pathway regulates bacterial phytopathogenesis. EMBO J (2013) 0.99

The structure and inhibition of a GGDEF diguanylate cyclase complexed with (c-di-GMP)(2) at the active site. Acta Crystallogr D Biol Crystallogr (2011) 0.99

Insights into the alkyl peroxide reduction pathway of Xanthomonas campestris bacterioferritin comigratory protein from the trapped intermediate-ligand complex structures. J Mol Biol (2009) 0.99

Diversity of Cyclic Di-GMP-Binding Proteins and Mechanisms. J Bacteriol (2016) 0.99

Looped out and perpendicular: deformation of Watson-Crick base pair associated with actinomycin D binding. Proc Natl Acad Sci U S A (2002) 0.95

Crystal structure of the C-terminal domain of a flagellar hook-capping protein from Xanthomonas campestris. J Mol Biol (2008) 0.94

XC1028 from Xanthomonas campestris adopts a PilZ domain-like structure without a c-di-GMP switch. Proteins (2009) 0.91

Xanthomonas campestris PqqD in the pyrroloquinoline quinone biosynthesis operon adopts a novel saddle-like fold that possibly serves as a PQQ carrier. Proteins (2009) 0.90

Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles. Proteins (2006) 0.90

Structural polymorphism of c-di-GMP bound to an EAL domain and in complex with a type II PilZ-domain protein. Acta Crystallogr D Biol Crystallogr (2012) 0.88

Preparation of amino-acid-type selective isotope labeling of protein expressed in Pichia pastoris. Proteins (2006) 0.88

DNA aptamers as potential anti-HIV agents. Trends Biochem Sci (2005) 0.87

NMR structure note--solution structure of a bacterial BolA-like protein XC975 from a plant pathogen Xanthomonas campestris pv. campestris. J Biomol NMR (2005) 0.86

Binding of actinomycin D to single-stranded DNA of sequence motifs d(TGTCT(n)G) and d(TGT(n)GTCT). Biophys J (2003) 0.85

Insulin resistance and protein metabolism in chronic hemodialysis patients. J Ren Nutr (2012) 0.84

A novel tetrameric PilZ domain structure from xanthomonads. PLoS One (2011) 0.84

Novel c-di-GMP recognition modes of the mouse innate immune adaptor protein STING. Acta Crystallogr D Biol Crystallogr (2013) 0.84

The first crystal structure of gluconolactonase important in the glucose secondary metabolic pathways. J Mol Biol (2008) 0.84

The crystal structure of XC847 from Xanthomonas campestris: a 3'-5' oligoribonuclease of DnaQ fold family with a novel opposingly shifted helix. Proteins (2006) 0.83

Crystal structure of XC5357 from Xanthomonas campestris: a putative tetracenomycin polyketide synthesis protein adopting a novel cupin subfamily structure. Proteins (2006) 0.83

Preparation, crystallization and preliminary X-ray analysis of XC2382, an ApaG protein of unknown structure from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.83

The crystal structure of XC1739: a putative multiple antibiotic-resistance repressor (MarR) from Xanthomonas campestris at 1.8 A resolution. Proteins (2006) 0.83

The nature of actinomycin D binding to d(AACCAXYG) sequence motifs. Nucleic Acids Res (2004) 0.82

Crystallization studies of the murine c-di-GMP sensor protein STING. Acta Crystallogr Sect F Struct Biol Cryst Commun (2012) 0.82

Actinomycin D binds to d(TGTCATG) with 2:1 drug to duplex stoichiometry. Biochemistry (2002) 0.81

The crystal structure of XC1258 from Xanthomonas campestris: a putative procaryotic Nit protein with an arsenic adduct in the active site. Proteins (2007) 0.81

Solution structure and tandem DNA recognition of the C-terminal effector domain of PmrA from Klebsiella pneumoniae. Nucleic Acids Res (2013) 0.81

Randomized comparison of group versus individual educational interventions for pregnant women to reduce their secondhand smoke exposure. Medicine (Baltimore) (2016) 0.80

Solution structure of the ActD-5'-CCGTT3GTGG-3' complex: drug interaction with tandem G.T mismatches and hairpin loop backbone. Nucleic Acids Res (2003) 0.80

Crystallization and preliminary X-ray diffraction studies of Xanthomonas campestris PNPase in the presence of c-di-GMP. Acta Crystallogr Sect F Struct Biol Cryst Commun (2012) 0.79

A new model for ligand release. Role of side chain in gating the enediyne antibiotic. J Biol Chem (2006) 0.78

Functional divergence of FimX in PilZ binding and type IV pilus regulation. J Bacteriol (2012) 0.78

Crystal structure of RecX: a potent regulatory protein of RecA from Xanthomonas campestris. Proteins (2009) 0.78

Sheared-type G(anti).C(syn) base-pair: a unique d(GXC) loop closure motif. J Mol Biol (2003) 0.78

Enantioselective aza-Morita-Baylis-Hillman reaction between acrylates and N-Boc isatin ketimines: asymmetric construction of chiral 3-substituted-3-aminooxindoles. Org Biomol Chem (2014) 0.78

Organocatalyzed enantioselective Mannich reaction of pyrazoleamides with isatin-derived ketimines. J Org Chem (2014) 0.77

A putative polyketide-synthesis protein XC5357 from Xanthomonas campestris: heterologous expression, crystallization and preliminary X-ray analysis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.77

Cloning, purification crystallization and preliminary X-ray characterization of a conserved hypothetical protein XC6422 from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.77

Crystal structure of a putative acyl-CoA thioesterase from Xanthomonas campestris (XC229) adopts a tetrameric hotdog fold of epsilongamma mode. Proteins (2006) 0.77

Crystallization and preliminary X-ray diffraction characterization of the XccFimX(EAL)-c-di-GMP and XccFimX(EAL)-c-di-GMP-XccPilZ complexes from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2012) 0.76

Cloning, crystallization and preliminary X-ray studies of XC2981 from Xanthomonas campestris, a putative CutA1 protein involved in copper-ion homeostasis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.76

XC5848, an ORFan protein from Xanthomonas campestris, adopts a novel variant of Sm-like motif. Proteins (2007) 0.76

Unique GTP-binding pocket and allostery of uridylate kinase from a gram-negative phytopathogenic bacterium. J Mol Biol (2008) 0.76

The crystallization of apo-form UMP kinase from Xanthomonas campestris is significantly improved in a strong magnetic field. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.75

Cloning, purification, crystallization and preliminary X-ray analysis of XC229, a conserved hypothetical protein from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.75

Cloning, crystallization and preliminary X-ray study of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.75

Cloning, expression, crystallization and preliminary X-ray analysis of a putative multiple antibiotic resistance repressor protein (MarR) from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.75

Preliminary X-ray analysis of XC5848, a hypothetical ORFan protein with an Sm-like motif from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.75

The cloning, crystallization and preliminary X-ray analysis of XC2113, a YaeQ protein from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.75

Crystallization and preliminary X-ray analysis of XC1015, a histidine triad-like protein from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.75

Preparation, crystallization and preliminary X-ray characterization of a conserved hypothetical protein XC1692 from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.75

Lipid bilayer-assisted release of an enediyne antibiotic from neocarzinostatin chromoprotein. Biochemistry (2010) 0.75

Crystal structure of DFA0005 complexed with alpha-ketoglutarate: a novel member of the ICL/PEPM superfamily from alkali-tolerant Deinococcus ficus. Proteins (2008) 0.75

Direct enantioselective vinylogous aldol-cyclization cascade reaction of allyl pyrazoleamides with isatins: asymmetric construction of spirocyclic oxindole-dihydropyranones. Chem Commun (Camb) (2014) 0.75

Enantioselective synthesis of spiro[indoline-3,4'-pyrano[2,3-c]pyrazole] derivatives via an organocatalytic asymmetric Michael/cyclization cascade reaction. Org Biomol Chem (2016) 0.75

A novel three-component reaction of allenoates, isocyanides, and carboxylic acids: facile synthesis of highly substituted acryl imide derivatives. J Org Chem (2008) 0.75