Viral self-assembly as a thermodynamic process.

PubWeight™: 1.80‹?› | Rank: Top 3%

🔗 View Article (PMID 12857229)

Published in Phys Rev Lett on June 17, 2003

Authors

Robijn F Bruinsma1, William M Gelbart, David Reguera, Joseph Rudnick, Roya Zandi

Author Affiliations

1: Department of Physics and Astronomy, The University of California at Los Angeles, Los Angeles, California 90095-1569, USA.

Articles citing this

Dynamic pathways for viral capsid assembly. Biophys J (2006) 2.23

Self-assembly and transformation of hybrid nano-objects and nanostructures under equilibrium and non-equilibrium conditions. Nat Mater (2009) 2.17

Origin of icosahedral symmetry in viruses. Proc Natl Acad Sci U S A (2004) 2.13

DNA-mediated anisotropic mechanical reinforcement of a virus. Proc Natl Acad Sci U S A (2006) 2.05

Core-controlled polymorphism in virus-like particles. Proc Natl Acad Sci U S A (2007) 1.66

Packaging of a polymer by a viral capsid: the interplay between polymer length and capsid size. Biophys J (2007) 1.57

Competing hydrophobic and screened-coulomb interactions in hepatitis B virus capsid assembly. Biophys J (2004) 1.52

The thermodynamics of virus capsid assembly. Methods Enzymol (2009) 1.44

Conformational changes in the hepatitis B virus core protein are consistent with a role for allostery in virus assembly. J Virol (2009) 1.42

A precise packing sequence for self-assembled convex structures. Proc Natl Acad Sci U S A (2007) 1.38

Classical nucleation theory of virus capsids. Biophys J (2005) 1.37

Simulation study of the contribution of oligomer/oligomer binding to capsid assembly kinetics. Biophys J (2005) 1.30

Trapping of hepatitis B virus capsid assembly intermediates by phenylpropenamide assembly accelerators. ACS Chem Biol (2010) 1.21

Invariant polymorphism in virus capsid assembly. J Am Chem Soc (2009) 1.20

Stochastic kinetics of viral capsid assembly based on detailed protein structures. Biophys J (2006) 1.07

A theory for viral capsid assembly around electrostatic cores. J Chem Phys (2009) 1.07

Size regulation of ss-RNA viruses. Biophys J (2009) 1.05

Controlling viral capsid assembly with templating. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 1.05

Mechanical deformation of spherical viruses with icosahedral symmetry. Biophys J (2006) 1.03

Mechanisms of size control and polymorphism in viral capsid assembly. Nano Lett (2008) 1.00

Modeling Viral Capsid Assembly. Adv Chem Phys (2015) 0.99

Mechanisms of virus assembly. Annu Rev Phys Chem (2014) 0.95

Self-assembly approaches to nanomaterial encapsulation in viral protein cages. J Mater Chem (2008) 0.95

Limitations on the optical tunability of small diameter gold nanoshells. Langmuir (2009) 0.93

Physical regulation of the self-assembly of tobacco mosaic virus coat protein. Biophys J (2006) 0.92

Viruses and the physics of soft condensed matter. Proc Natl Acad Sci U S A (2004) 0.91

Shape control through molecular segregation in giant surfactant aggregates. Proc Natl Acad Sci U S A (2004) 0.90

Generalized structural polymorphism in self-assembled viral particles. Nano Lett (2008) 0.90

Mechanical disassembly of single virus particles reveals kinetic intermediates predicted by theory. Biophys J (2012) 0.88

Structure and stoichiometry of template-directed recombinant HIV-1 Gag particles. J Mol Biol (2011) 0.85

Synonymous mutations reduce genome compactness in icosahedral ssRNA viruses. Biophys J (2015) 0.83

Optimal architectures of elongated viruses. Proc Natl Acad Sci U S A (2010) 0.80

Minimal bending energies of bilayer polyhedra. Phys Rev Lett (2010) 0.80

Major capsid reinforcement by a minor protein in herpesviruses and phage. Nucleic Acids Res (2014) 0.79

Impact of the topology of viral RNAs on their encapsulation by virus coat proteins. J Biol Phys (2013) 0.79

Recent Developments in Molecular Simulation Approaches to Study Spherical Virus Capsids. Mol Simul (2014) 0.78

The Robust Assembly of Small Symmetric Nanoshells. Biophys J (2015) 0.77

On the effect of thermodynamic equilibrium on the assembly efficiency of complex multi-layered virus-like particles (VLP): the case of rotavirus VLP. PLoS Comput Biol (2012) 0.77

Illuminating the Reaction Pathways of Viromimetic Assembly. J Am Chem Soc (2017) 0.75

Elastic energy of polyhedral bilayer vesicles. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.75

Articles by these authors

Prepublication data sharing. Nature (2009) 12.24

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature (2007) 11.66

Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science (2002) 9.43

Genome sequence of Aedes aegypti, a major arbovirus vector. Science (2007) 9.19

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol (2002) 8.59

FlyBase: genomes by the dozen. Nucleic Acids Res (2006) 6.96

Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes. Genome Res (2007) 4.73

VectorBase: a data resource for invertebrate vector genomics. Nucleic Acids Res (2008) 3.73

Forces and pressures in DNA packaging and release from viral capsids. Biophys J (2003) 3.04

Osmotic pressure inhibition of DNA ejection from phage. Proc Natl Acad Sci U S A (2003) 3.03

VectorBase: a home for invertebrate vectors of human pathogens. Nucleic Acids Res (2006) 2.94

Origin of icosahedral symmetry in viruses. Proc Natl Acad Sci U S A (2004) 2.13

Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes. Genetics (2008) 2.09

The effect of genome length on ejection forces in bacteriophage lambda. Virology (2006) 1.73

Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps. Genetics (2008) 1.67

Predicting the sizes of large RNA molecules. Proc Natl Acad Sci U S A (2008) 1.63

Packaging of a polymer by a viral capsid: the interplay between polymer length and capsid size. Biophys J (2007) 1.57

New method to analyze simulations of activated processes. J Chem Phys (2007) 1.56

A deletion-generator compound element allows deletion saturation analysis for genomewide phenotypic annotation. Proc Natl Acad Sci U S A (2002) 1.38

Classical nucleation theory of virus capsids. Biophys J (2005) 1.37

Research resources for Drosophila: the expanding universe. Nat Rev Genet (2005) 1.34

Measurements of DNA lengths remaining in a viral capsid after osmotically suppressed partial ejection. Biophys J (2004) 1.34

Mechanical properties of viral capsids. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 1.33

Automatic categorization of diverse experimental information in the bioscience literature. BMC Bioinformatics (2012) 1.27

Effects of salt concentrations and bending energy on the extent of ejection of phage genomes. Biophys J (2007) 1.26

Elasticity theory and shape transitions of viral shells. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 1.22

Dynamics of DNA ejection from bacteriophage. Biophys J (2006) 1.22

Genome-scale analysis of positionally relocated genes. Genome Res (2007) 1.21

Physical chemistry of DNA viruses. Annu Rev Phys Chem (2009) 1.17

Osmotic shock and the strength of viral capsids. Biophys J (2003) 1.15

Visualizing large RNA molecules in solution. RNA (2011) 1.15

Structural polymorphism of the cytoskeleton: a model of linker-assisted filament aggregation. Proc Natl Acad Sci U S A (2005) 1.14

Self-assembly of viral capsid protein and RNA molecules of different sizes: requirement for a specific high protein/RNA mass ratio. J Virol (2011) 1.14

What drives the translocation of stiff chains? Proc Natl Acad Sci U S A (2003) 1.12

Inferring genome-scale rearrangement phylogeny and ancestral gene order: a Drosophila case study. Genome Biol (2007) 1.11

Direct measurement of phage phi29 stiffness provides evidence of internal pressure. Small (2012) 1.10

Unclosed HIV-1 capsids suggest a curled sheet model of assembly. J Mol Biol (2012) 1.08

Using the P[wHy] hybrid transposable element to disrupt genes in region 54D-55B in Drosophila melanogaster. Genetics (2002) 1.08

A statistical-thermodynamic model of viral budding. Biophys J (2004) 1.06

Effect of mono- and multivalent salts on angle-dependent attractions between charged rods. Phys Rev Lett (2004) 1.06

Salt-dependent DNA-DNA spacings in intact bacteriophage λ reflect relative importance of DNA self-repulsion and bending energies. Phys Rev Lett (2011) 1.01

Nonequilibirum assembly, retroviruses, and conical structures. Phys Rev Lett (2009) 1.01

Techniques for multi-genome synteny analysis to overcome assembly limitations. Genome Inform (2006) 0.99

Curvature dependence of viral protein structures on encapsidated nanoemulsion droplets. ACS Nano (2008) 0.97

Nucleosome switches. Phys Rev Lett (2008) 0.96

Universal Fast Walking for direct and versatile determination of flanking sequence. Gene (2002) 0.96

Thermodynamics of nanospheres encapsulated in virus capsids. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.94

Exploiting fluorescent polymers to probe the self-assembly of virus-like particles. J Phys Chem B (2011) 0.93

In vitro quantification of the relative packaging efficiencies of single-stranded RNA molecules by viral capsid protein. J Virol (2012) 0.93

Assembly of viruses and the pseudo-law of mass action. J Chem Phys (2009) 0.91

Apex exponents for polymer-probe interactions. Phys Rev Lett (2005) 0.90

The size of RNA as an ideal branched polymer. J Chem Phys (2011) 0.90

Finite-size effects in simulations of nucleation. J Chem Phys (2006) 0.89

Kinetic theory of virus capsid assembly. Phys Biol (2007) 0.87

Rescue of infectious particles from preassembled alphavirus nucleocapsid cores. J Virol (2011) 0.87

Multishell structures of virus coat proteins. J Phys Chem B (2010) 0.86

Two-level system with a thermally fluctuating transfer matrix element: application to the problem of DNA charge transfer. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.85

Fluctuation-induced forces between inclusions in a fluid membrane under tension. Phys Rev Lett (2011) 0.85

The ends of a large RNA molecule are necessarily close. Nucleic Acids Res (2010) 0.84

Reconstituted plant viral capsids can release genes to mammalian cells. Virology (2013) 0.84

A sequential folding model predicts length-independent secondary structure properties of long ssRNA. J Phys Chem B (2011) 0.84

A genetic screen for maternal-effect suppressors of decapentaplegic identifies the eukaryotic translation initiation factor 4A in Drosophila. Genetics (2005) 0.83

Force measurements on natural membrane nanovesicles reveal a composition-independent, high Young's modulus. Nanoscale (2014) 0.83

Analysis of 14 BAC sequences from the Aedes aegypti genome: a benchmark for genome annotation and assembly. Genome Biol (2007) 0.83

Kinetic reconstruction of the free-energy landscape. J Phys Chem B (2008) 0.83

The force acting on a polymer partially confined in a tube. J Phys Chem B (2009) 0.83

Impact of charge variation on the encapsulation of nanoparticles by virus coat proteins. Phys Biol (2012) 0.81

The interplay between mechanics and stability of viral cages. Nanoscale (2014) 0.81

Optimal architectures of elongated viruses. Proc Natl Acad Sci U S A (2010) 0.80

Relevance of capsid structure in the buckling and maturation of spherical viruses. Phys Biol (2012) 0.80

Impact of the topology of viral RNAs on their encapsulation by virus coat proteins. J Biol Phys (2013) 0.79

Nucleation rate isotherms of argon from molecular dynamics simulations. J Chem Phys (2007) 0.79

Crossover from nucleation to spinodal decomposition in a condensing vapor. J Chem Phys (2009) 0.78

Degenerate ground-state lattices of membrane inclusions. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 0.78

Physics of shell assembly: line tension, hole implosion, and closure catastrophe. J Chem Phys (2012) 0.78

A novel minimal in vitro system for analyzing HIV-1 Gag-mediated budding. J Biol Phys (2014) 0.78

Three-body fluctuation-induced interaction at fluid interfaces: a strong deviation from the pairwise summation. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.77

Scattering approach for fluctuation-induced interactions at fluid interfaces. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.77

Theoretical studies on assembly, physical stability and dynamics of viruses. Subcell Biochem (2013) 0.77

Attachment and detachment rate distributions in deep-bed filtration. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.77

The structure of elongated viral capsids. Biophys J (2010) 0.77

Role of charge regulation and size polydispersity in nanoparticle encapsulation by viral coat proteins. J Phys Chem B (2015) 0.76

Large-scale functional annotation and expanded implementations of the P{wHy} hybrid transposon in the Drosophila melanogaster genome. Genetics (2009) 0.76

Symmetries of interacting helices of charge. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.75

Disorder induced transition into a one-dimensional wigner glass. Phys Rev Lett (2007) 0.75

Simplicity of the spherical spin-glass model. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.75

Adsorption of annealed branched polymers on curved surfaces. J Phys Condens Matter (2015) 0.75

A modified universal fast walking method for single-tube transposon mapping. Nat Protoc (2007) 0.75

Spherical spin-glass-Coulomb-gas duality: solution beyond mean-field theory. Phys Rev Lett (2010) 0.75

Finite-size effects in presence of gravity: the behavior of the susceptibility in 3He and 4He films near the liquid-vapor critical point. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.75

Casimir force in the rotor model with twisted boundary conditions. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.75

Analysis of a continuous field theory in two dimensions with use of the density matrix renormalization group. Phys Rev Lett (2002) 0.75

Physical Principles in the Self-Assembly of a Simple Spherical Virus. Acc Chem Res (2015) 0.75