Published in Biophys J on March 24, 2006
Core-controlled polymorphism in virus-like particles. Proc Natl Acad Sci U S A (2007) 1.66
The thermodynamics of virus capsid assembly. Methods Enzymol (2009) 1.44
Conformational changes in the hepatitis B virus core protein are consistent with a role for allostery in virus assembly. J Virol (2009) 1.42
Design principles for self-assembly with short-range interactions. Proc Natl Acad Sci U S A (2011) 1.39
A precise packing sequence for self-assembled convex structures. Proc Natl Acad Sci U S A (2007) 1.38
On the origin of cells and viruses: primordial virus world scenario. Ann N Y Acad Sci (2009) 1.29
Mechanical properties of the icosahedral shell of southern bean mosaic virus: a molecular dynamics study. Biophys J (2009) 1.26
Trapping of hepatitis B virus capsid assembly intermediates by phenylpropenamide assembly accelerators. ACS Chem Biol (2010) 1.21
Invariant polymorphism in virus capsid assembly. J Am Chem Soc (2009) 1.20
Encapsulation of a polymer by an icosahedral virus. Phys Biol (2010) 1.17
Distinguishing reversible from irreversible virus capsid assembly. J Mol Biol (2006) 1.14
A theory for viral capsid assembly around electrostatic cores. J Chem Phys (2009) 1.07
Modeling the self-assembly of the cellulosome enzyme complex. J Biol Chem (2010) 1.05
Phage P22 procapsids equilibrate with free coat protein subunits. J Mol Biol (2006) 1.05
Controlling viral capsid assembly with templating. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 1.05
Size regulation of ss-RNA viruses. Biophys J (2009) 1.05
Mechanisms of capsid assembly around a polymer. Biophys J (2010) 1.04
In vitro screening for molecules that affect virus capsid assembly (and other protein association reactions). Nat Protoc (2007) 1.03
Understanding the concentration dependence of viral capsid assembly kinetics--the origin of the lag time and identifying the critical nucleus size. Biophys J (2010) 1.03
Tilable nature of virus capsids and the role of topological constraints in natural capsid design. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 1.02
Exploring the parameter space of complex self-assembly through virus capsid models. Biophys J (2007) 1.02
Mechanisms of size control and polymorphism in viral capsid assembly. Nano Lett (2008) 1.00
Modeling Viral Capsid Assembly. Adv Chem Phys (2015) 0.99
The role of collective motion in examples of coarsening and self-assembly. Soft Matter (2008) 0.99
Simulated self-assembly of the HIV-1 capsid: protein shape and native contacts are sufficient for two-dimensional lattice formation. Biophys J (2011) 0.98
Electrostatic regulation of genome packaging in human hepatitis B virus. Biophys J (2009) 0.97
Multiscale simulation of microbe structure and dynamics. Prog Biophys Mol Biol (2011) 0.96
Viral genome structures are optimal for capsid assembly. Elife (2013) 0.96
Mechanisms of virus assembly. Annu Rev Phys Chem (2014) 0.95
On global minimizers of repulsive-attractive power-law interaction energies. Philos Trans A Math Phys Eng Sci (2014) 0.95
Mechanisms of kinetic trapping in self-assembly and phase transformation. J Chem Phys (2011) 0.95
Differential assembly of Hepatitis B Virus core protein on single- and double-stranded nucleic acid suggest the dsDNA-filled core is spring-loaded. Virology (2012) 0.95
To build a virus on a nucleic acid substrate. Biophys J (2013) 0.90
Generalized structural polymorphism in self-assembled viral particles. Nano Lett (2008) 0.90
Using Markov state models to study self-assembly. J Chem Phys (2014) 0.89
A parameter estimation technique for stochastic self-assembly systems and its application to human papillomavirus self-assembly. Phys Biol (2010) 0.88
Langevin dynamics simulation of polymer-assisted virus-like assembly. J Chem Phys (2012) 0.88
Mechanical disassembly of single virus particles reveals kinetic intermediates predicted by theory. Biophys J (2012) 0.88
The hepatitis B virus core protein intradimer interface modulates capsid assembly and stability. Biochemistry (2014) 0.86
Surveying capsid assembly pathways through simulation-based data fitting. Biophys J (2012) 0.86
Early stages of the HIV-1 capsid protein lattice formation. Biophys J (2012) 0.86
Pathways for virus assembly around nucleic acids. J Mol Biol (2014) 0.84
The impact of conformational fluctuations on self-assembly: cooperative aggregation of archaeal chaperonin proteins. Nano Lett (2009) 0.84
Simulations show that virus assembly and budding are facilitated by membrane microdomains. Biophys J (2015) 0.84
Stochastic dynamics of virus capsid formation: direct versus hierarchical self-assembly. BMC Biophys (2012) 0.83
Burst analysis spectroscopy: a versatile single-particle approach for studying distributions of protein aggregates and fluorescent assemblies. Proc Natl Acad Sci U S A (2008) 0.83
Recent advances in coarse-grained modeling of virus assembly. Curr Opin Virol (2016) 0.82
Applying molecular crowding models to simulations of virus capsid assembly in vitro. Biophys J (2014) 0.82
Hydrogen bond migration between molecular sites observed with ultrafast 2D IR chemical exchange spectroscopy. J Phys Chem B (2010) 0.82
A theoretical model for the dynamic structure of hepatitis B nucleocapsid. Biophys J (2011) 0.82
Dynamics simulations for engineering macromolecular interactions. Chaos (2013) 0.81
Coarse-grained simulation reveals key features of HIV-1 capsid self-assembly. Nat Commun (2016) 0.80
The Role of Packaging Sites in Efficient and Specific Virus Assembly. J Mol Biol (2015) 0.79
Mechanical and assembly units of viral capsids identified via quasi-rigid domain decomposition. PLoS Comput Biol (2013) 0.79
Assembly and Release of Hepatitis B Virus. Cold Spring Harb Perspect Med (2015) 0.79
Recent Developments in Molecular Simulation Approaches to Study Spherical Virus Capsids. Mol Simul (2014) 0.78
Simulations of HIV capsid protein dimerization reveal the effect of chemistry and topography on the mechanism of hydrophobic protein association. Biophys J (2012) 0.78
Modeling Effects of RNA on Capsid Assembly Pathways via Coarse-Grained Stochastic Simulation. PLoS One (2016) 0.78
Nanofluidic Devices with 8 Pores in Series for Real-Time, Resistive-Pulse Analysis of Hepatitis B Virus Capsid Assembly. Anal Chem (2017) 0.77
On the effect of thermodynamic equilibrium on the assembly efficiency of complex multi-layered virus-like particles (VLP): the case of rotavirus VLP. PLoS Comput Biol (2012) 0.77
Dynamics of self-assembly of model viral capsids in the presence of a fluctuating membrane. J Phys Chem B (2013) 0.77
Clathrin Assembly Regulated by Adaptor Proteins in Coarse-Grained Models. Biophys J (2016) 0.77
The Robust Assembly of Small Symmetric Nanoshells. Biophys J (2015) 0.77
Patterns without patches: hierarchical self-assembly of complex structures from simple building blocks. ACS Nano (2014) 0.77
The Structural Biology of Hepatitis B Virus: Form and Function. Annu Rev Virol (2016) 0.77
Computational virology: From the inside out. Biochim Biophys Acta (2016) 0.76
A Thermodynamic Model for Genome Packaging in Hepatitis B Virus. Biophys J (2015) 0.76
Tabulation as a high-resolution alternative to coarse-graining protein interactions: Initial application to virus capsid subunits. J Chem Phys (2015) 0.76
Rotational diffusion affects the dynamical self-assembly pathways of patchy particles. Proc Natl Acad Sci U S A (2015) 0.76
Allosteric Control of Icosahedral Capsid Assembly. J Phys Chem B (2016) 0.75
An assembly funnel makes biomolecular complex assembly efficient. PLoS One (2014) 0.75
Design principles for nonequilibrium self-assembly. Proc Natl Acad Sci U S A (2016) 0.75
Many-molecule encapsulation by an icosahedral shell. Elife (2016) 0.75
Illuminating the Reaction Pathways of Viromimetic Assembly. J Am Chem Soc (2017) 0.75
Uncertainty Quantified Computational Analysis of the Energetics of Virus Capsid Assembly. Proceedings (IEEE Int Conf Bioinformatics Biomed) (2017) 0.75
Kinetic constraints on self-assembly into closed supramolecular structures. Sci Rep (2017) 0.75
VMD: visual molecular dynamics. J Mol Graph (1996) 117.02
Physical principles in the construction of regular viruses. Cold Spring Harb Symp Quant Biol (1962) 17.87
Transition path sampling: throwing ropes over rough mountain passes, in the dark. Annu Rev Phys Chem (2001) 7.13
RECONSTITUTION OF ACTIVE TOBACCO MOSAIC VIRUS FROM ITS INACTIVE PROTEIN AND NUCLEIC ACID COMPONENTS. Proc Natl Acad Sci U S A (1955) 5.25
Structure of small viruses. Nature (1956) 3.65
Dimorphism of hepatitis B virus capsids is strongly influenced by the C-terminus of the capsid protein. Biochemistry (1996) 3.00
To build a virus capsid. An equilibrium model of the self assembly of polyhedral protein complexes. J Mol Biol (1994) 2.64
A theoretical model successfully identifies features of hepatitis B virus capsid assembly. Biochemistry (1999) 2.34
Virus Particle Explorer (VIPER), a website for virus capsid structures and their computational analyses. J Virol (2001) 2.34
Weak protein-protein interactions are sufficient to drive assembly of hepatitis B virus capsids. Biochemistry (2002) 2.34
Mechanism of capsid assembly for an icosahedral plant virus. Virology (2000) 2.24
Energetics of quasiequivalence: computational analysis of protein-protein interactions in icosahedral viruses. Biophys J (1998) 2.22
The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions. J Mol Biol (1997) 2.16
Origin of icosahedral symmetry in viruses. Proc Natl Acad Sci U S A (2004) 2.13
Finite temperature string method for the study of rare events. J Phys Chem B (2005) 2.09
The tobacco mosaic virus particle: structure and assembly. Philos Trans R Soc Lond B Biol Sci (1999) 1.95
Model-based analysis of assembly kinetics for virus capsids or other spherical polymers. Biophys J (2002) 1.91
Viral self-assembly as a thermodynamic process. Phys Rev Lett (2003) 1.80
Canine parvovirus capsid structure, analyzed at 2.9 A resolution. J Mol Biol (1996) 1.79
Local rule-based theory of virus shell assembly. Proc Natl Acad Sci U S A (1994) 1.77
The role of subunit entropy in cooperative assembly. Nucleation of microtubules and other two-dimensional polymers. Biophys J (1981) 1.64
Local rules simulation of the kinetics of virus capsid self-assembly. Biophys J (1998) 1.57
Observed hysteresis of virus capsid disassembly is implicit in kinetic models of assembly. J Biol Chem (2003) 1.53
Competing hydrophobic and screened-coulomb interactions in hepatitis B virus capsid assembly. Biophys J (2004) 1.52
A precise packing sequence for self-assembled convex structures. Proc Natl Acad Sci U S A (2007) 1.38
Classical nucleation theory of virus capsids. Biophys J (2005) 1.37
Role of interfacial amino acid residues in assembly, stability, and conformation of a spherical virus capsid. Proc Natl Acad Sci U S A (2004) 1.36
Self-assembly of polyhedral shells: a molecular dynamics study. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 1.35
Regulating self-assembly of spherical oligomers. Nano Lett (2005) 1.34
A tiling approach to virus capsid assembly explaining a structural puzzle in virology. J Theor Biol (2004) 1.31
Simulation study of the contribution of oligomer/oligomer binding to capsid assembly kinetics. Biophys J (2005) 1.30
In vitro papillomavirus capsid assembly analyzed by light scattering. Virology (2004) 1.25
Association entropy in adsorption processes. Biophys J (2000) 1.12
Optimized interactions for targeted self-assembly: application to a honeycomb lattice. Phys Rev Lett (2005) 1.10
Stochastic kinetics of viral capsid assembly based on detailed protein structures. Biophys J (2006) 1.07
Effects of the cowpea chlorotic mottle bromovirus beta-hexamer structure on virion assembly. Virology (2003) 1.00
"Local rules" theory applied to polyomavirus polymorphic capsid assemblies. Virology (2000) 0.91
The assembly of a virus. Sci Am (1978) 0.89
Algorithms for Brownian dynamics computer simulations: multivariable case. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics (1999) 0.85
Transition path sampling: throwing ropes over rough mountain passes, in the dark. Annu Rev Phys Chem (2001) 7.13
Drying-induced hydrophobic polymer collapse. Proc Natl Acad Sci U S A (2002) 2.56
Meeting the demand for crop production: the challenge of yield decline in crops grown in short rotations. Biol Rev Camb Philos Soc (2011) 2.06
Telehealthcare for asthma. Cochrane Database Syst Rev (2010) 1.94
Solvent coarse-graining and the string method applied to the hydrophobic collapse of a hydrated chain. Proc Natl Acad Sci U S A (2007) 1.67
The putative liquid-liquid transition is a liquid-solid transition in atomistic models of water. J Chem Phys (2011) 1.47
Psychosis susceptibility gene ZNF804A and cognitive performance in schizophrenia. Arch Gen Psychiatry (2010) 1.46
Atomistic understanding of kinetic pathways for single base-pair binding and unbinding in DNA. Proc Natl Acad Sci U S A (2003) 1.46
Sitting at the edge: how biomolecules use hydrophobicity to tune their interactions and function. J Phys Chem B (2012) 1.40
The role of solvent fluctuations in hydrophobic assembly. J Phys Chem B (2008) 1.38
Dynamic order-disorder in atomistic models of structural glass formers. Science (2009) 1.37
Fluctuations of water near extended hydrophobic and hydrophilic surfaces. J Phys Chem B (2010) 1.36
Instantaneous liquid interfaces. J Phys Chem B (2010) 1.35
Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. J Gen Virol (2010) 1.30
Geometrical explanation and scaling of dynamical heterogeneities in glass forming systems. Phys Rev Lett (2002) 1.25
Corresponding states of structural glass formers. J Phys Chem B (2009) 1.25
Coarse-grained microscopic model of glass formers. Proc Natl Acad Sci U S A (2003) 1.18
The putative liquid-liquid transition is a liquid-solid transition in atomistic models of water. II. J Chem Phys (2013) 1.17
Deleterious GRM1 mutations in schizophrenia. PLoS One (2012) 1.16
A mutation in an alternative untranslated exon of hexokinase 1 associated with hereditary motor and sensory neuropathy -- Russe (HMSNR). Eur J Hum Genet (2009) 1.15
Extended surfaces modulate hydrophobic interactions of neighboring solutes. Proc Natl Acad Sci U S A (2011) 1.14
Model of a fluid at small and large length scales and the hydrophobic effect. Phys Rev E Stat Nonlin Soft Matter Phys (2001) 1.14
Excitation lines and the breakdown of Stokes-Einstein relations in supercooled liquids. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 1.14
Space-time thermodynamics of the glass transition. Proc Natl Acad Sci U S A (2005) 1.13
Elastic energy storage in beta-sheets with application to F1-ATPase. Eur Biophys J (2003) 1.10
Highly variable neural involvement in sphingomyelinase-deficient Niemann-Pick disease caused by an ancestral Gypsy mutation. Brain (2007) 1.08
Epigenetic estimation of age in humpback whales. Mol Ecol Resour (2014) 1.06
Telehealthcare for asthma: a Cochrane review. CMAJ (2011) 1.05
Heterogeneity and growing length scales in the dynamics of kinetically constrained lattice gases in two dimensions. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 1.04
Corresponding states for mesostructure and dynamics of supercooled water. Faraday Discuss (2013) 1.03
Ndrg1 in development and maintenance of the myelin sheath. Neurobiol Dis (2011) 1.03
An improved coarse-grained model of solvation and the hydrophobic effect. J Chem Phys (2011) 1.02
Impact of shortened crop rotation of oilseed rape on soil and rhizosphere microbial diversity in relation to yield decline. PLoS One (2013) 1.02
The unbinding of ATP from F1-ATPase. Biophys J (2003) 1.00
Decoupling of exchange and persistence times in atomistic models of glass formers. J Chem Phys (2007) 0.99
Autosomal-recessive congenital cerebellar ataxia is caused by mutations in metabotropic glutamate receptor 1. Am J Hum Genet (2012) 0.98
Fluctuation-dissipation ratios in the dynamics of self-assembly. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.96
Coarse-grained modeling of the interface between water and heterogeneous surfaces. Faraday Discuss (2009) 0.96
Decoupling of self-diffusion and structural relaxation during a fragile-to-strong crossover in a kinetically constrained lattice gas. Chemphyschem (2005) 0.96
The 2012 BSR and BHPR guideline for the treatment of psoriatic arthritis with biologics. Rheumatology (Oxford) (2013) 0.95
Preparation and relaxation of very stable glassy states of a simulated liquid. Phys Rev Lett (2011) 0.93
The conformational states of Mg.ATP in water. Eur Biophys J (2003) 0.92
Physical chemistry: oil on troubled waters. Nature (2007) 0.91
Comprehensive analysis of tagging sequence variants in DTNBP1 shows no association with schizophrenia or with its composite neurocognitive endophenotypes. Am J Med Genet B Neuropsychiatr Genet (2008) 0.89
Quantifying density fluctuations in volumes of all shapes and sizes using indirect umbrella sampling. J Stat Phys (2011) 0.88
Dynamical exchanges in facilitated models of supercooled liquids. J Chem Phys (2005) 0.88
Functionally distinct PI 3-kinase pathways regulate myelination in the peripheral nervous system. J Cell Biol (2014) 0.87
Carrier rates of the ancestral Indian W24X mutation in GJB2 in the general Gypsy population and individual subisolates. Genet Test (2007) 0.87
Impact of the Reelin signaling cascade (ligands-receptors-adaptor complex) on cognition in schizophrenia. Am J Med Genet B Neuropsychiatr Genet (2012) 0.87
A genome-wide association analysis of a broad psychosis phenotype identifies three loci for further investigation. Biol Psychiatry (2013) 0.87
Phase diagram of supercooled water confined to hydrophilic nanopores. J Chem Phys (2012) 0.87
Segue between favorable and unfavorable solvation. J Phys Chem B (2007) 0.86
Molecular explanation for why talc surfaces can be both hydrophilic and hydrophobic. J Am Chem Soc (2011) 0.86
Corresponding states of structural glass formers. II. J Phys Chem B (2010) 0.85
Water evaporation: a transition path sampling study. J Phys Chem B (2013) 0.85
jAMVLE, A new integrated molecular visualization learning environment*. Biochem Mol Biol Educ (2006) 0.84
Founder mutation causing infantile GM1-gangliosidosis in the Gypsy population. Mol Genet Metab (2006) 0.82
Water at an electrochemical interface--a simulation study. Faraday Discuss (2009) 0.81
Finite-temperature critical point of a glass transition. Proc Natl Acad Sci U S A (2010) 0.81
Evidence of aberrant DNA damage response signalling but normal rates of DNA repair in dividing lymphoblasts from patients with schizophrenia. World J Biol Psychiatry (2011) 0.80
Neutron scattering and monte carlo determination of the variation of the critical nucleus size with quench depth. J Phys Chem B (2006) 0.79
Space-time thermodynamics and subsystem observables in a kinetically constrained model of glassy materials. J Chem Phys (2006) 0.78
Constrained dynamics of localized excitations causes a non-equilibrium phase transition in an atomistic model of glass formers. J Chem Phys (2012) 0.78
Inherited balanced translocation t(9;17)(q33.2;q25.3) concomitant with a 16p13.1 duplication in a patient with schizophrenia. Am J Med Genet B Neuropsychiatr Genet (2011) 0.77
Characterizing heterogeneous dynamics at hydrated electrode surfaces. J Chem Phys (2013) 0.77
Attrition of U.S. military enlistees with waivers for hearing deficiency, 1995-2004. Mil Med (2007) 0.76
Comment on "Dissociation of water under pressure". Phys Rev Lett (2002) 0.75
Ion dynamics: Wired-up water. Nat Chem (2012) 0.75
Space: dreams of the new space race. Nature (2007) 0.75
The role of nurses in blood services and donor sessions. Nurs Times (2005) 0.75
Obtaining quartz crystal frequencies from deterministic temperatures and random angle variations. IEEE Trans Ultrason Ferroelectr Freq Control (2007) 0.75
Negative differential mobility of weakly driven particles in models of glass formers. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 0.75
Planetary science: The burger bar that saved the world. Nature (2008) 0.75