Published in Science on October 10, 2003
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A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria. Proc Natl Acad Sci U S A (2010) 2.25
MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. BMC Genomics (2010) 2.12
Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs. Microbiol Mol Biol Rev (2007) 1.89
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. PLoS One (2009) 1.83
Bacterial variations on the methionine salvage pathway. BMC Microbiol (2004) 1.68
Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms. Philos Trans R Soc Lond B Biol Sci (2008) 1.63
Mechanistic diversity in the RuBisCO superfamily: a novel isomerization reaction catalyzed by the RuBisCO-like protein from Rhodospirillum rubrum. Biochemistry (2008) 1.18
CO2-responsive expression and gene organization of three ribulose-1,5-bisphosphate carboxylase/oxygenase enzymes and carboxysomes in Hydrogenovibrio marinus strain MH-110. J Bacteriol (2004) 1.16
Abundance and functional diversity of riboswitches in microbial communities. BMC Genomics (2007) 1.16
Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils. Appl Environ Microbiol (2005) 1.15
Conversion of methionine to cysteine in Bacillus subtilis and its regulation. J Bacteriol (2006) 1.14
Modified pathway to synthesize ribulose 1,5-bisphosphate in methanogenic archaea. J Bacteriol (2004) 1.13
A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis. Nat Chem Biol (2012) 1.13
Directing the evolution of Rubisco and Rubisco activase: first impressions of a new tool for photosynthesis research. Photosynth Res (2008) 1.09
Composition of archaeal, bacterial, and eukaryal RuBisCO genotypes in three Western Pacific arc hydrothermal vent systems. Extremophiles (2006) 0.97
Phloem-specific expression of Yang cycle genes and identification of novel Yang cycle enzymes in Plantago and Arabidopsis. Plant Cell (2011) 0.96
The evolution of photosynthesis...again? Philos Trans R Soc Lond B Biol Sci (2008) 0.95
Roles of RubisCO and the RubisCO-like protein in 5-methylthioadenosine metabolism in the Nonsulfur purple bacterium Rhodospirillum rubrum. J Bacteriol (2009) 0.94
A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode. Appl Environ Microbiol (2014) 0.92
Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: implications for catalytic mechanism. Protein Sci (2008) 0.91
Structural and functional similarities between a ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO)-like protein from Bacillus subtilis and photosynthetic RuBisCO. J Biol Chem (2009) 0.87
A mediator of Rho-dependent invasion moonlights as a methionine salvage enzyme. Mol Cell Proteomics (2009) 0.86
Enzymatic characterization of AMP phosphorylase and ribose-1,5-bisphosphate isomerase functioning in an archaeal AMP metabolic pathway. J Bacteriol (2012) 0.86
Comparative molecular analysis of chemolithoautotrophic bacterial diversity and community structure from coastal saline soils, Gujarat, India. BMC Microbiol (2012) 0.85
Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1. J Biol Chem (2012) 0.84
Structural and biochemical basis for the inhibition of cell death by APIP, a methionine salvage enzyme. Proc Natl Acad Sci U S A (2013) 0.84
Branched-chain amino acid aminotransferase and methionine formation in Mycobacterium tuberculosis. BMC Microbiol (2004) 0.80
Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile. J Biol Chem (2010) 0.80
1-methylthio-D-xylulose 5-phosphate methylsulfurylase: a novel route to 1-deoxy-D-xylulose 5-phosphate in Rhodospirillum rubrum. Biochemistry (2012) 0.79
Crystallization and preliminary X-ray analysis of methylthioribose-1-phosphate isomerase from Bacillus subtilis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.78
Breaking the rules of Rubisco catalysis. J Exp Bot (2016) 0.78
Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways. Metabolomics (2014) 0.77
Mechanistic diversity in the RuBisCO superfamily: RuBisCO from Rhodospirillum rubrum is not promiscuous for reactions catalyzed by RuBisCO-like proteins. Biochemistry (2012) 0.77
A "footprint" of plant carbon fixation cycle functions during the development of a heterotrophic fungus. Sci Rep (2015) 0.77
MtnBD is a multifunctional fusion enzyme in the methionine salvage pathway of Tetrahymena thermophila. PLoS One (2013) 0.76
Crystallization and preliminary X-ray analysis of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.75
Application of representational difference analysis to identify genomic differences between Bradyrhizobium elkanii and B. Japonicum species. Braz J Microbiol (2010) 0.75
Metabolism: Nothing to waste. Nat Chem Biol (2012) 0.75
A RuBisCO-mediated carbon metabolic pathway in methanogenic archaea. Nat Commun (2017) 0.75
Metabolic Regulation as a Consequence of Anaerobic 5-Methylthioadenosine Recycling in Rhodospirillum rubrum. MBio (2016) 0.75
Variation of phytoplankton community structure from the Pearl River estuary to South China Sea. Ecotoxicology (2015) 0.75
Spatial variation of phytoplankton community structure in Daya Bay, China. Ecotoxicology (2015) 0.75
The Arnon-Buchanan cycle: a retrospective, 1966-2016. Photosynth Res (2017) 0.75
Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res (2011) 6.88
Genome sequencing and analysis of Aspergillus oryzae. Nature (2005) 5.47
Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater. Proc Natl Acad Sci U S A (2002) 5.40
Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature (2004) 5.08
Macrophages in inflammation. Curr Drug Targets Inflamm Allergy (2005) 2.85
DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Res (2004) 2.61
A widespread family of bacterial cell wall assembly proteins. EMBO J (2011) 2.33
14-3-3 proteins act as intracellular receptors for rice Hd3a florigen. Nature (2011) 2.20
Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase. DNA Res (2006) 2.11
Regulation of rice NADPH oxidase by binding of Rac GTPase to its N-terminal extension. Plant Cell (2007) 2.11
Discovery of two novel families of proteins that are proposed to interact with prokaryotic SMC proteins, and characterization of the Bacillus subtilis family members ScpA and ScpB. Mol Microbiol (2002) 2.06
Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK. J Bacteriol (2002) 2.01
An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA. Mol Cell (2003) 1.90
Deletion of kasB in Mycobacterium tuberculosis causes loss of acid-fastness and subclinical latent tuberculosis in immunocompetent mice. Proc Natl Acad Sci U S A (2007) 1.86
Highly frequent mutations in negative regulators of multiple virulence genes in group A streptococcal toxic shock syndrome isolates. PLoS Pathog (2010) 1.77
Six GTP-binding proteins of the Era/Obg family are essential for cell growth in Bacillus subtilis. Microbiology (2002) 1.76
Serodiagnosis of Mycobacterium avium-complex pulmonary disease using an enzyme immunoassay kit. Am J Respir Crit Care Med (2007) 1.75
Bacterial variations on the methionine salvage pathway. BMC Microbiol (2004) 1.68
Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome. Mol Microbiol (2004) 1.65
Proteomics characterization of novel spore proteins of Bacillus subtilis. Microbiology (2002) 1.61
Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Plant Cell Physiol (2004) 1.60
The BceRS two-component regulatory system induces expression of the bacitracin transporter, BceAB, in Bacillus subtilis. Mol Microbiol (2003) 1.58
Noc protein binds to specific DNA sequences to coordinate cell division with chromosome segregation. EMBO J (2009) 1.56
Syncope upon swallowing caused by an esophageal hiatal hernia compressing the left atrium: a case report. Echocardiography (2004) 1.55
Rothia aeria sp. nov., Rhodococcus baikonurensis sp. nov. and Arthrobacter russicus sp. nov., isolated from air in the Russian space laboratory Mir. Int J Syst Evol Microbiol (2004) 1.54
A new FtsZ-interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis. Mol Microbiol (2006) 1.49
Identification of a protein, YneA, responsible for cell division suppression during the SOS response in Bacillus subtilis. Mol Microbiol (2003) 1.47
Binding of response regulator DegU to the aprE promoter is inhibited by RapG, which is counteracted by extracellular PhrG in Bacillus subtilis. Mol Microbiol (2003) 1.47
Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA. Proc Natl Acad Sci U S A (2008) 1.45
Dual-probe assay for rapid detection of drug-resistant Mycobacterium tuberculosis by real-time PCR. J Clin Microbiol (2004) 1.41
Structure of the ubiquitin-interacting motif of S5a bound to the ubiquitin-like domain of HR23B. J Biol Chem (2003) 1.40
Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB. Mol Microbiol (2009) 1.38
Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method. DNA Res (2007) 1.37
The nitric oxide-responsive regulator NsrR controls ResDE-dependent gene expression. J Bacteriol (2006) 1.35
Inferring gene regulatory networks from time-ordered gene expression data of Bacillus subtilis using differential equations. Pac Symp Biocomput (2003) 1.34
Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis. DNA Res (2008) 1.32
Chryseobacterium miricola sp. nov., a novel species isolated from condensation water of space station Mir. Syst Appl Microbiol (2003) 1.32
The GTP-binding protein YlqF participates in the late step of 50 S ribosomal subunit assembly in Bacillus subtilis. J Biol Chem (2006) 1.32
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation. Nucleic Acids Res (2010) 1.30
The role of G-protein-coupled receptor kinase 5 in pathogenesis of sporadic Parkinson's disease. J Neurosci (2006) 1.28
Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli. DNA Res (2008) 1.27
Synergistic regulation of competence development in Bacillus subtilis by two Rap-Phr systems. J Bacteriol (2005) 1.27
A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies. DNA Res (2005) 1.26
Expression and biochemical properties of a ferredoxin-dependent heme oxygenase required for phytochrome chromophore synthesis. Plant Physiol (2002) 1.25
Bacillus minimum genome factory: effective utilization of microbial genome information. Biotechnol Appl Biochem (2007) 1.25
Physiological functions of the water-water cycle (Mehler reaction) and the cyclic electron flow around PSI in rice leaves. Plant Cell Physiol (2002) 1.24
pCold-GST vector: a novel cold-shock vector containing GST tag for soluble protein production. Protein Expr Purif (2008) 1.23
Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses. Gene (2004) 1.22
Programmed proteome response for drought avoidance/tolerance in the root of a C(3) xerophyte (wild watermelon) under water deficits. Plant Cell Physiol (2008) 1.20
Memory B cells in the lung participate in protective humoral immune responses to pulmonary influenza virus reinfection. Proc Natl Acad Sci U S A (2012) 1.20
Macrophage scavenger receptor down-regulates mycobacterial cord factor-induced proinflammatory cytokine production by alveolar and hepatic macrophages. Microb Pathog (2006) 1.20
Escherichia coli with a linear genome. EMBO Rep (2007) 1.16
Was photosynthetic RuBisCO recruited by acquisitive evolution from RuBisCO-like proteins involved in sulfur metabolism? Res Microbiol (2005) 1.16
Serodiagnosis of pulmonary disease due to Mycobacterium avium complex with an enzyme immunoassay that uses a mixture of glycopeptidolipid antigens. Clin Infect Dis (2002) 1.15
Selective transmission of R5 HIV-1 over X4 HIV-1 at the dendritic cell-T cell infectious synapse is determined by the T cell activation state. PLoS Pathog (2009) 1.11
Evaluation of variable numbers of tandem repeat as molecular epidemiological markers of Mycobacterium tuberculosis in Japan. J Med Microbiol (2007) 1.11
The long-term responses of the photosynthetic proton circuit to drought. Plant Cell Environ (2008) 1.11
Dominant incidence of multidrug and extensively drug-resistant specific Mycobacterium tuberculosis clones in Osaka Prefecture, Japan. PLoS One (2012) 1.11
15N-15N J-coupling across Hg(II): direct observation of Hg(II)-mediated T-T base pairs in a DNA duplex. J Am Chem Soc (2007) 1.10
Potent hydroxyl radical-scavenging activity of drought-induced type-2 metallothionein in wild watermelon. Biochem Biophys Res Commun (2004) 1.10
Extracellular mycobacterial DNA-binding protein 1 participates in mycobacterium-lung epithelial cell interaction through hyaluronic acid. J Biol Chem (2004) 1.10
Efficient and stable transformation of Lactuca sativa L. cv. Cisco (lettuce) plastids. Transgenic Res (2006) 1.10
Bacillus subtilis RghR (YvaN) represses rapG and rapH, which encode inhibitors of expression of the srfA operon. Mol Microbiol (2006) 1.09
Increasing the ratio of Soj to Spo0J promotes replication initiation in Bacillus subtilis. J Bacteriol (2003) 1.09
Bacillus subtilis YabA is involved in determining the timing and synchrony of replication initiation. FEMS Microbiol Lett (2005) 1.08
Cloning and characterization of mevalonate pathway genes in a natural rubber producing plant, Hevea brasiliensis. Biosci Biotechnol Biochem (2008) 1.08
The DNA-binding protease, CND41, and the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase in senescent leaves of tobacco. Planta (2004) 1.07
Emendation of the genus Sphingomonas Yabuuchi et al. 1990 and junior objective synonymy of the species of three genera, Sphingobium, Novosphingobium and Sphingopyxis, in conjunction with Blastomonas ursincola. Int J Syst Evol Microbiol (2002) 1.07
The Bacillus subtilis YufLM two-component system regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Microbiology (2003) 1.06
spoIVH (ykvV), a requisite cortex formation gene, is expressed in both sporulating compartments of Bacillus subtilis. J Bacteriol (2004) 1.06
Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family. J Exp Bot (2004) 1.05
Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli. FEBS Lett (2006) 1.05
RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO. J Exp Bot (2008) 1.05
Bacillus subtilis EzrA and FtsL synergistically regulate FtsZ ring dynamics during cell division. Microbiology (2006) 1.05
Transcriptional, functional and cytochemical analyses of the veg gene in Bacillus subtilis. J Biochem (2003) 1.05
Identification of an endo-beta-N-acetylglucosaminidase gene in Caenorhabditis elegans and its expression in Escherichia coli. Glycobiology (2002) 1.05
Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli. BMC Genomics (2007) 1.05
Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry. Anal Bioanal Chem (2008) 1.04
Clinical and prognostic importance of serotyping Mycobacterium avium-Mycobacterium intracellulare complex isolates in human immunodeficiency virus-negative patients. J Clin Microbiol (2005) 1.04
The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtils. Genes Genet Syst (2008) 1.04
Large ring polymers align FtsZ polymers for normal septum formation. EMBO J (2011) 1.03
The GTP-binding protein YqeH participates in biogenesis of the 30S ribosome subunit in Bacillus subtilis. Genes Genet Syst (2007) 1.03
Dual negative control of spx transcription initiation from the P3 promoter by repressors PerR and YodB in Bacillus subtilis. J Bacteriol (2006) 1.03
The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J Mol Evol (2003) 1.03
Structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications. J Biol Chem (2009) 1.03