Published in Mol Phylogenet Evol on December 01, 2003
Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci U S A (2005) 8.98
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Res (2006) 5.31
Chromosome triplication found across the tribe Brassiceae. Genome Res (2005) 3.92
Choosing and using a plant DNA barcode. PLoS One (2011) 3.64
Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol Bioinform Online (2008) 3.57
Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci U S A (2011) 3.41
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS One (2006) 3.24
Use of ITS2 region as the universal DNA barcode for plants and animals. PLoS One (2010) 2.92
A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. RNA (2005) 2.75
Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res (2009) 2.33
Pan-eukaryote ITS2 homologies revealed by RNA secondary structure. Nucleic Acids Res (2007) 2.14
A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evol Biol (2006) 2.06
Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures. RNA (2005) 1.94
Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics (2005) 1.81
Universal plant DNA barcode loci may not work in complex groups: a case study with Indian berberis species. PLoS One (2010) 1.73
Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota). BMC Evol Biol (2008) 1.54
Phylogenetic relationships of American willows (Salix L., Salicaceae). PLoS One (2015) 1.45
Phylogenetic properties of 50 nuclear loci in Medicago (Leguminosae) generated using multiplexed sequence capture and next-generation sequencing. PLoS One (2014) 1.45
Shape-shifting corals: molecular markers show morphology is evolutionarily plastic in Porites. BMC Evol Biol (2009) 1.41
Refining the DNA barcode for land plants. Proc Natl Acad Sci U S A (2011) 1.38
Allopolyploid speciation in Persicaria (Polygonaceae): insights from a low-copy nuclear region. Proc Natl Acad Sci U S A (2008) 1.37
Molecular-genetic biodiversity in a natural population of the yeast Saccharomyces cerevisiae from "Evolution Canyon": microsatellite polymorphism, ploidy and controversial sexual status. Genetics (2006) 1.31
Extensive pyrosequencing reveals frequent intra-genomic variations of internal transcribed spacer regions of nuclear ribosomal DNA. PLoS One (2012) 1.31
ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus ). BMC Evol Biol (2009) 1.30
Inferring polyploid phylogenies from multiply-labeled gene trees. BMC Evol Biol (2009) 1.24
Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi. BMC Bioinformatics (2005) 1.23
Development of nuclear gene-derived molecular markers linked to legume genetic maps. Mol Genet Genomics (2006) 1.22
From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction. Philos Trans R Soc Lond B Biol Sci (2006) 1.19
Folding and finding RNA secondary structure. Cold Spring Harb Perspect Biol (2010) 1.18
Cyto-nuclear discordance in the phylogeny of Ficus section Galoglychia and host shifts in plant-pollinator associations. BMC Evol Biol (2009) 1.17
Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae. BMC Evol Biol (2011) 1.16
The short ITS2 sequence serves as an efficient taxonomic sequence tag in comparison with the full-length ITS. Biomed Res Int (2013) 1.14
The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny. PLoS One (2011) 1.12
Ribosomal DNA in the grasshopper Podisma pedestris: escape from concerted evolution. Genetics (2006) 1.11
Comparative analysis of rDNA distribution in chromosomes of various species of Brassicaceae. Ann Bot (2005) 1.11
Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biol (2010) 1.07
Phylogenetics of Olea (Oleaceae) based on plastid and nuclear ribosomal DNA sequences: tertiary climatic shifts and lineage differentiation times. Ann Bot (2009) 1.07
Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression. Genetics (2007) 1.06
Phylogenetic relationships in genus Arachis based on ITS and 5.8S rDNA sequences. BMC Plant Biol (2010) 1.04
A nuclear ribosomal DNA phylogeny of acer inferred with maximum likelihood, splits graphs, and motif analysis of 606 sequences. Evol Bioinform Online (2007) 1.04
Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): disentangling phylogenetic signal, reticulation, and noise. BMC Evol Biol (2009) 1.04
Molecular systematics of Gagea and Lloydia (Liliaceae; Liliales): implications of analyses of nuclear ribosomal and plastid DNA sequences for infrageneric classification. Ann Bot (2009) 1.02
Hybridization and long-distance colonization at different time scales: towards resolution of long-term controversies in the sweet vernal grasses (Anthoxanthum). Ann Bot (2013) 1.00
Phylogeny and biogeography of the genus Ainsliaea (Asteraceae) in the Sino-Japanese region based on nuclear rDNA and plastid DNA sequence data. Ann Bot (2007) 1.00
Extreme multiple reticulate origins of the Pteris cadieri complex (Pteridaceae). Int J Mol Sci (2012) 0.99
Progenitor-derivative relationships of Hordeum polyploids (Poaceae, Triticeae) inferred from sequences of TOPO6, a nuclear low-copy gene region. PLoS One (2012) 0.99
Similar patterns of rDNA evolution in synthetic and recently formed natural populations of Tragopogon (Asteraceae) allotetraploids. BMC Evol Biol (2010) 0.98
Molecular phylogenetic analyses of nuclear and plastid DNA sequences support dysploid and polyploid chromosome number changes and reticulate evolution in the diversification of Melampodium (Millerieae, Asteraceae). Mol Phylogenet Evol (2009) 0.97
Plant rDNA database: update and new features. Database (Oxford) (2014) 0.96
A bicontinental origin of polyploid Australian/New Zealand Lepidium species (Brassicaceae)? Evidence from genomic in situ hybridization. Ann Bot (2009) 0.95
Species delimitation in plants using the Qinghai-Tibet Plateau endemic Orinus (Poaceae: Tridentinae) as an example. Ann Bot (2015) 0.95
Immediate unidirectional epigenetic reprogramming of NORs occurs independently of rDNA rearrangements in synthetic and natural forms of a polyploid species Brassica napus. Chromosoma (2011) 0.95
Inferring species networks from gene trees in high-polyploid North American and Hawaiian violets (Viola, Violaceae). Syst Biol (2011) 0.95
Extensive 5.8S nrDNA polymorphism in Mammillaria (Cactaceae) with special reference to the identification of pseudogenic internal transcribed spacer regions. J Plant Res (2008) 0.94
Reticulate evolutionary history of a complex group of grasses: phylogeny of Elymus StStHH allotetraploids based on three nuclear genes. PLoS One (2010) 0.94
The internal transcribed spacer (ITS) region and trnH-psbA [corrected] are suitable candidate loci for DNA barcoding of tropical tree species of India. PLoS One (2013) 0.94
Explosive radiation in high Andean Hypericum-rates of diversification among New World lineages. Front Genet (2013) 0.93
Unveiling cryptic species diversity of flowering plants: successful biological species identification of Asian Mitella using nuclear ribosomal DNA sequences. BMC Evol Biol (2009) 0.93
Comparative analyses of classical phenotypic method and ribosomal RNA gene sequencing for identification of medically relevant Candida species. Mem Inst Oswaldo Cruz (2013) 0.93
Phylogeny of Campanuloideae (Campanulaceae) with emphasis on the utility of nuclear pentatricopeptide repeat (PPR) genes. PLoS One (2014) 0.93
Molecular phylogeny and evolutionary history of the Eurasiatic orchid genus Himantoglossum s.l. (Orchidaceae). Ann Bot (2014) 0.92
Genetic differentiation and delimitation between ecologically diverged Populus euphratica and P. pruinosa. PLoS One (2011) 0.92
Compensatory base changes in ITS2 secondary structures correlate with the biological species concept despite intragenomic variability in ITS2 sequences--a proof of concept. PLoS One (2013) 0.91
Molecular systematics and the diatom species. Protist (2008) 0.91
Molecular evidence for a natural primary triple hybrid in plants revealed from direct sequencing. Ann Bot (2007) 0.91
Molecular phylogenetics, seed morphometrics, chromosome number evolution and systematics of European Elatine L. (Elatinaceae) species. PeerJ (2016) 0.91
A multi gene sequence-based phylogeny of the Musaceae (banana) family. BMC Evol Biol (2011) 0.91
Nuclear ribosomal ITS functional paralogs resolve the phylogenetic relationships of a late-miocene radiation cycad Cycas (Cycadaceae). PLoS One (2015) 0.91
Reticulate evolution in diploid and tetraploid species of Polystachya (Orchidaceae) as shown by plastid DNA sequences and low-copy nuclear genes. Ann Bot (2010) 0.90
A continental-wide perspective: the genepool of nuclear encoded ribosomal DNA and single-copy gene sequences in North American Boechera (Brassicaceae). PLoS One (2012) 0.90
Fine-scale geographical structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae). Ann Bot (2004) 0.90
Parental origin and genome evolution in the allopolyploid Iris versicolor. Ann Bot (2007) 0.90
The loci recommended as universal barcodes for plants on the basis of floristic studies may not work with congeneric species as exemplified by DNA barcoding of Dendrobium species. BMC Res Notes (2012) 0.89
Phylogeography of bivalve Cyclina sinensis: testing the historical glaciations and Changjiang River outflow hypotheses in northwestern Pacific. PLoS One (2012) 0.89
Phylogenomic analyses of nuclear genes reveal the evolutionary relationships within the BEP clade and the evidence of positive selection in Poaceae. PLoS One (2013) 0.89
Biosystematics and conservation: a case study with two enigmatic and uncommon species of Crassula from New Zealand. Ann Bot (2007) 0.89
Are both sympatric species Ilex perado and Ilex canariensis secretly hybridizing? Indication from nuclear markers collected in Tenerife. BMC Evol Biol (2004) 0.88
Reconsidering the generation time hypothesis based on nuclear ribosomal ITS sequence comparisons in annual and perennial angiosperms. BMC Evol Biol (2008) 0.88
Geneious! Simplified genome skimming methods for phylogenetic systematic studies: A case study in Oreocarya (Boraginaceae). Appl Plant Sci (2014) 0.88
From gene trees to a dated allopolyploid network: insights from the angiosperm genus Viola (Violaceae). Syst Biol (2014) 0.88
Phylogeny of the cycads based on multiple single-copy nuclear genes: congruence of concatenated parsimony, likelihood and species tree inference methods. Ann Bot (2013) 0.88
Phylogeography of ostreopsis along west Pacific coast, with special reference to a novel clade from Japan. PLoS One (2011) 0.88
Re-mind the gap! Insertion - deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi. PLoS One (2012) 0.87
A DNA-based method for studying root responses to drought in field-grown wheat genotypes. Sci Rep (2013) 0.87
The use and limits of ITS data in the analysis of intraspecific variation in Passiflora L. (Passifloraceae). Genet Mol Biol (2010) 0.87
Polyploid evolution and Pleistocene glacial cycles: A case study from the alpine primrose Primula marginata (Primulaceae). BMC Evol Biol (2012) 0.86
Phylogeny of Litsea and related genera (Laureae-Lauraceae) based on analysis of rpb2 gene sequences. J Plant Res (2009) 0.86
Barcoding poplars (Populus L.) from western China. PLoS One (2013) 0.86
Evolution of plant RNA polymerase IV/V genes: evidence of subneofunctionalization of duplicated NRPD2/NRPE2-like paralogs in Viola (Violaceae). BMC Evol Biol (2010) 0.86
RoBuST: an integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae. BMC Plant Biol (2010) 0.86
Identification of species and materia medica within Angelica L. (Umbelliferae) based on phylogeny inferred from DNA barcodes. Mol Ecol Resour (2014) 0.85
Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae). PeerJ (2015) 0.85
Ribosomal DNA sequence heterogeneity reflects intraspecies phylogenies and predicts genome structure in two contrasting yeast species. Syst Biol (2014) 0.85
Forensically informative nucleotide sequencing (FINS) for the authentication of Chinese medicinal materials. Chin Med (2011) 0.85
Its evolution in Platanus (Platanaceae): homoeologues, pseudogenes and ancient hybridization. Ann Bot (2007) 0.85
Reconstruction of phylogenetic relationships in a highly reticulate group with deep coalescence and recent speciation (Hieracium, Asteraceae). Heredity (Edinb) (2012) 0.84
ITS2 Secondary Structure Improves Discrimination between Medicinal "Mu Tong" Species when Using DNA Barcoding. PLoS One (2015) 0.84
Recent natural hybridization between two allopolyploid wheatgrasses (Elytrigia, Poaceae): ecological and evolutionary implications. Ann Bot (2007) 0.84
Molecular-marker-facilitated investigations of quantitative-trait loci in maize. I. Numbers, genomic distribution and types of gene action. Genetics (1987) 17.28
LINKAGE-1: a PASCAL computer program for the detection and analysis of genetic linkage. J Hered (1983) 10.23
Toward a unified genetic map of higher plants, transcending the monocot-dicot divergence. Nat Genet (1996) 4.08
A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics (1994) 3.08
Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton. Genome Res (1998) 2.29
Polyploid formation in cotton is not accompanied by rapid genomic changes. Genome (2001) 2.13
The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group. Am J Bot (1998) 2.08
Duplicated genes evolve independently after polyploid formation in cotton. Proc Natl Acad Sci U S A (1999) 1.57
Homoeolog expression bias and expression level dominance in allopolyploid cotton. Heredity (Edinb) (2012) 1.48
Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.). J Mol Evol (1993) 1.48
Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons. J Mol Evol (1996) 1.43
Comparative development of fiber in wild and cultivated cotton. Evol Dev (2001) 1.42
Retrotransposon activation followed by rapid repression in introgressed rice plants. Genome (2000) 1.39
Biogeography and floral evolution of baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets. Syst Biol (1998) 1.37
Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.). Mol Biol Evol (1999) 1.29
Evolutionary dynamics of Waxy and the origin of hexaploid Spartina species (Poaceae). Mol Phylogenet Evol (2006) 1.26
Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences. Syst Biol (1998) 1.23
Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium). Genetics (2000) 1.10
Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae). Mol Biol Evol (1997) 1.10
Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae). Mol Phylogenet Evol (1997) 1.10
Genetic and epigenetic aspects of polyploid evolution in plants. Cytogenet Genome Res (2013) 1.10
Evidence for multilocus genetic control of preferential fertilisation in maize. Heredity (Edinb) (1987) 1.08
Homoeolog expression bias and expression level dominance in allopolyploids. New Phytol (2012) 1.08
Hairpins create minute inversions in non-coding regions of chloroplast DNA. Curr Genet (1996) 1.05
Evolution and expression of MYB genes in diploid and polyploid cotton. Plant Mol Biol (2003) 1.04
Allozyme evidence for the origin and diversification of Gossypium barbadense L. Theor Appl Genet (1990) 0.99
Ty1-copia-retrotransposon behavior in a polyploid cotton. Chromosome Res (2000) 0.93
Phylogeny, duplication, and intraspecific variation of Adh sequences in New World diploid cottons (Gossypium l., malvaceae). Mol Phylogenet Evol (2000) 0.89
Phylogenetic insights into the pace and pattern of plant genome size evolution. Genome Dyn (2008) 0.86
Distorted segregation and linkage of alcohol dehydrogenase genes in Camellia japonica L. (Theaceae). Biochem Genet (1984) 0.80
The mitochondrial genome of allotetraploid cotton (Gossypium L.). J Hered (1999) 0.78
Cladistic biogeography of Gleditsia (Leguminosae) based on ndhF and rpl16 chloroplast gene sequences. Am J Bot (1998) 0.78