Published in Bioinformatics on December 12, 2003
PID: the Pathway Interaction Database. Nucleic Acids Res (2008) 12.92
caGrid 1.0: an enterprise Grid infrastructure for biomedical research. J Am Med Inform Assoc (2007) 6.15
The Gaggle: an open-source software system for integrating bioinformatics software and data sources. BMC Bioinformatics (2006) 4.05
The caCORE Software Development Kit: streamlining construction of interoperable biomedical information services. BMC Med Inform Decis Mak (2006) 4.00
Overview and utilization of the NCI thesaurus. Comp Funct Genomics (2004) 3.70
caCORE version 3: Implementation of a model driven, service-oriented architecture for semantic interoperability. J Biomed Inform (2007) 3.33
Formal representation of eligibility criteria: a literature review. J Biomed Inform (2009) 3.16
The BRIDG project: a technical report. J Am Med Inform Assoc (2007) 3.13
GridIMAGE: a novel use of grid computing to support interactive human and computer-assisted detection decision support. J Digit Imaging (2007) 2.21
Enhancing quality of retrieval through concept edit history. AMIA Annu Symp Proc (2003) 1.99
The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation. J Biomed Semantics (2011) 1.77
Implementing personalized medicine in a cancer center. Cancer J (2011) 1.69
Computational approaches to phenotyping: high-throughput phenomics. Proc Am Thorac Soc (2007) 1.57
The CAP cancer protocols--a case study of caCORE based data standards implementation to integrate with the Cancer Biomedical Informatics Grid. BMC Med Inform Decis Mak (2006) 1.53
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. BMC Bioinformatics (2007) 1.51
Sharing data and analytical resources securely in a biomedical research Grid environment. J Am Med Inform Assoc (2008) 1.36
e-Science, caGrid, and Translational Biomedical Research. Computer (Long Beach Calif) (2008) 1.32
LOINC® - A Universal Catalog of Individual Clinical Observations and Uniform Representation of Enumerated Collections. Int J Funct Inform Personal Med (2011) 1.30
Data standards for clinical research data collection forms: current status and challenges. J Am Med Inform Assoc (2011) 1.25
Investigating the semantic interoperability of laboratory data exchanged using LOINC codes in three large institutions. AMIA Annu Symp Proc (2011) 1.22
Semantic web data warehousing for caGrid. BMC Bioinformatics (2009) 1.21
Mapping data elements to terminological resources for integrating biomedical data sources. BMC Bioinformatics (2006) 1.21
The caBIG® Life Science Business Architecture Model. Bioinformatics (2011) 1.07
Cross-terminology mapping challenges: a demonstration using medication terminological systems. J Biomed Inform (2012) 1.06
Knowledge management for systems biology a general and visually driven framework applied to translational medicine. BMC Syst Biol (2011) 1.01
A roadmap for caGrid, an enterprise Grid architecture for biomedical research. Stud Health Technol Inform (2008) 1.01
A metadata approach for clinical data management in translational genomics studies in breast cancer. BMC Med Genomics (2009) 1.01
HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH. Int J High Perform Comput Appl (2009) 0.97
Tumor taxonomy for the developmental lineage classification of neoplasms. BMC Cancer (2004) 0.91
Integration of prostate cancer clinical data using an ontology. J Biomed Inform (2009) 0.90
A machine learning approach to identify clinical trials involving nanodrugs and nanodevices from ClinicalTrials.gov. PLoS One (2014) 0.89
Detecting role errors in the gene hierarchy of the NCI Thesaurus. Cancer Inform (2008) 0.89
Development of the Lymphoma Enterprise Architecture Database: a caBIG Silver level compliant system. Cancer Inform (2009) 0.87
An application of a service-oriented system to support array annotation in custom chip design for epigenomic analysis. Cancer Inform (2008) 0.84
A semantic web framework to integrate cancer omics data with biological knowledge. BMC Bioinformatics (2012) 0.83
mspecLINE: bridging knowledge of human disease with the proteome. BMC Med Genomics (2010) 0.83
The Establishment of the First Cancer Tissue Biobank at a Hispanic-Serving Institution: A National Cancer Institute-Funded Initiative between Moffitt Cancer Center in Florida and the Ponce School of Medicine and Health Sciences in Puerto Rico. Biopreserv Biobank (2011) 0.83
Translational Research Design Templates, Grid Computing, and HPC. IPDPS (2008) 0.83
A data-driven concept schema for defining clinical research data needs. Int J Med Inform (2016) 0.75
Automated Tools for Clinical Research Data Quality Control using NCI Common Data Elements. AMIA Jt Summits Transl Sci Proc (2014) 0.75
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A (2002) 20.48
PID: the Pathway Interaction Database. Nucleic Acids Res (2008) 12.92
SNPdetector: a software tool for sensitive and accurate SNP detection. PLoS Comput Biol (2005) 10.04
The BioPAX community standard for pathway data sharing. Nat Biotechnol (2010) 9.19
The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics (2006) 7.37
Global transcription in pluripotent embryonic stem cells. Cell Stem Cell (2008) 5.81
Allelic variation in gene expression is common in the human genome. Genome Res (2003) 5.50
An anatomy of normal and malignant gene expression. Proc Natl Acad Sci U S A (2002) 4.45
The caCORE Software Development Kit: streamlining construction of interoperable biomedical information services. BMC Med Inform Decis Mak (2006) 4.00
Long-range heterogeneity at the 3' ends of human mRNAs. Genome Res (2002) 3.91
Modeling a description logic vocabulary for cancer research. J Biomed Inform (2005) 3.89
Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays. Clin Cancer Res (2005) 3.79
CREBBP mutations in relapsed acute lymphoblastic leukaemia. Nature (2011) 3.72
Overview and utilization of the NCI thesaurus. Comp Funct Genomics (2004) 3.70
Development of FuGO: an ontology for functional genomics investigations. OMICS (2006) 3.59
Rembrandt: helping personalized medicine become a reality through integrative translational research. Mol Cancer Res (2009) 3.58
Key pathways are frequently mutated in high-risk childhood acute lymphoblastic leukemia: a report from the Children's Oncology Group. Blood (2011) 3.40
caCORE version 3: Implementation of a model driven, service-oriented architecture for semantic interoperability. J Biomed Inform (2007) 3.33
Of mice and men: aligning mouse and human anatomies. AMIA Annu Symp Proc (2005) 3.12
Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer. Cancer Res (2003) 2.84
Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach. Genomics (2005) 2.61
Genome-wide association study in esophageal cancer using GeneChip mapping 10K array. Cancer Res (2005) 2.22
The completion of the Mammalian Gene Collection (MGC). Genome Res (2009) 2.21
Identification of key processes underlying cancer phenotypes using biologic pathway analysis. PLoS One (2007) 2.18
Large-scale analysis of non-synonymous coding region single nucleotide polymorphisms. Bioinformatics (2004) 1.99
Enhancing quality of retrieval through concept edit history. AMIA Annu Symp Proc (2003) 1.99
Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma. Hepatology (2010) 1.97
Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome. PLoS Genet (2007) 1.71
Genomewide distribution of high-frequency, completely mismatching SNP haplotype pairs observed to be common across human populations. Am J Hum Genet (2003) 1.66
Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format. Bioinformatics (2011) 1.61
HapScope: a software system for automated and visual analysis of functionally annotated haplotypes. Nucleic Acids Res (2002) 1.60
A high-resolution multistrain haplotype analysis of laboratory mouse genome reveals three distinctive genetic variation patterns. Genome Res (2005) 1.50
Tyrosine kinome sequencing of pediatric acute lymphoblastic leukemia: a report from the Children's Oncology Group TARGET Project. Blood (2012) 1.47
The cancer genome anatomy project: online resources to reveal the molecular signatures of cancer. Cancer Invest (2002) 1.46
The NCI Thesaurus quality assurance life cycle. J Biomed Inform (2009) 1.46
Multiple cross and inbred strain haplotype mapping of complex-trait candidate genes. Genome Res (2003) 1.41
Needles in the haystack: identifying individuals present in pooled genomic data. PLoS Genet (2009) 1.35
e-Science, caGrid, and Translational Biomedical Research. Computer (Long Beach Calif) (2008) 1.32
Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages. Appl Ontol (2008) 1.26
Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB). Genome Res (2007) 1.22
A genome scan of 18 families with chronic lymphocytic leukaemia. Br J Haematol (2003) 1.18
Obesity in adults is associated with reduced lung function in metabolic syndrome and diabetes: the Strong Heart Study. Diabetes Care (2011) 1.15
Susceptibility to aflatoxin B1-related primary hepatocellular carcinoma in mice and humans. Cancer Res (2003) 1.13
Genotypic and phenotypic characterization of a putative tumor susceptibility gene, GNMT, in liver cancer. Cancer Res (2003) 1.12
Genome-wide loss of heterozygosity and copy number alteration in esophageal squamous cell carcinoma using the Affymetrix GeneChip Mapping 10 K array. BMC Genomics (2006) 1.09
Infrastructure for a learning health care system: CaBIG. Health Aff (Millwood) (2009) 1.07
Bioinformatics tools for single nucleotide polymorphism discovery and analysis. Ann N Y Acad Sci (2004) 1.04
Integrated cross-species transcriptional network analysis of metastatic susceptibility. Proc Natl Acad Sci U S A (2012) 1.03
CEBS object model for systems biology data, SysBio-OM. Bioinformatics (2004) 1.02
Comparative sequence analysis of imprinted genes between human and mouse to reveal imprinting signatures. Genomics (2004) 1.02
A computational approach to measuring coherence of gene expression in pathways. Genomics (2004) 1.01
Direct ampholyte-free liquid-phase isoelectric peptide focusing: application to the human serum proteome. Electrophoresis (2004) 0.96
Detecting cancer gene networks characterized by recurrent genomic alterations in a population. PLoS One (2011) 0.94
Genetic susceptibility and dietary patterns in lung cancer. Lung Cancer (2003) 0.93
The mouse-human anatomy ontology mapping project. Database (Oxford) (2012) 0.93
ATG deserts define a novel core promoter subclass. Genome Res (2005) 0.92
Wrestling with SUMO and bio-ontologies. Nat Biotechnol (2006) 0.92
Superposition of transcriptional behaviors determines gene state. PLoS One (2008) 0.91
Significance of genetic variation at the glutathione S-transferase M1 and NAD(P)H:quinone oxidoreductase 1 detoxification genes in breast cancer development. Oncology (2002) 0.91
Novel pathway analysis of genomic polymorphism-cancer risk interaction in the Breast Cancer Prevention Trial. Int J Mol Epidemiol Genet (2010) 0.88
Life sciences domain analysis model. J Am Med Inform Assoc (2012) 0.85
Cyberinfrastructure and the biomedical sciences. Am J Prev Med (2011) 0.83
Hemochromatosis gene mutations and distal adenomatous colorectal polyps. Cancer Epidemiol Biomarkers Prev (2005) 0.82
A phylogenetic analysis identifies heterogeneity among hepatocellular carcinomas. Hepatology (2002) 0.81
Square or sine: finding a waveform with high success rate of eliciting SSVEP. Comput Intell Neurosci (2011) 0.80
Genome-wide transcriptional sequencing identifies novel mutations in metabolic genes in human hepatocellular carcinoma. Cancer Genomics Proteomics (2014) 0.78
Systems analysis utilising pathway interactions identifies sonic hedgehog pathway as a primary biomarker and oncogenic target in hepatocellular carcinoma. IET Syst Biol (2013) 0.77
Ex vivo comparison of three surgical techniques to stabilize canine cranial cruciate ligament deficient stifles. Vet Surg (2010) 0.76
Relating Complexity and Error Rates of Ontology Concepts. More Complex NCIt Concepts Have More Errors. Methods Inf Med (2017) 0.75