Published in Nucleic Acids Res on January 01, 2004
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res (2008) 27.83
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2005) 22.98
The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res (2005) 21.68
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2006) 18.85
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res (2004) 11.53
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. Nucleic Acids Res (2005) 7.81
TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Nucleic Acids Res (2006) 5.31
STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. Nucleic Acids Res (2004) 3.71
PISCES: recent improvements to a PDB sequence culling server. Nucleic Acids Res (2005) 3.55
FR3D: finding local and composite recurrent structural motifs in RNA 3D structures. J Math Biol (2007) 2.81
REBASE--restriction enzymes and DNA methyltransferases. Nucleic Acids Res (2005) 2.70
3did: interacting protein domains of known three-dimensional structure. Nucleic Acids Res (2005) 2.18
IMGT/3Dstructure-DB and IMGT/DomainGapAlign: a database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF. Nucleic Acids Res (2009) 1.94
The PEDANT genome database in 2005. Nucleic Acids Res (2005) 1.88
Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation. Plant Physiol (2006) 1.75
BacMap: an interactive picture atlas of annotated bacterial genomes. Nucleic Acids Res (2005) 1.65
HAPPI: an online database of comprehensive human annotated and predicted protein interactions. BMC Genomics (2009) 1.61
A structural model for the large subunit of the mammalian mitochondrial ribosome. J Mol Biol (2006) 1.46
LOCnet and LOCtarget: sub-cellular localization for structural genomics targets. Nucleic Acids Res (2004) 1.12
Saturating representation of loop conformational fragments in structure databanks. BMC Struct Biol (2006) 1.00
Analysis of the conformation and function of the Plasmodium falciparum merozoite proteins MTRAP and PTRAMP. Eukaryot Cell (2012) 0.99
Examinations of tRNA Range of Motion Using Simulations of Cryo-EM Microscopy and X-Ray Data. J Biophys (2011) 0.92
Alternative protein-protein interfaces are frequent exceptions. PLoS Comput Biol (2012) 0.90
Structural relationships in the lysozyme superfamily: significant evidence for glycoside hydrolase signature motifs. PLoS One (2010) 0.89
DIAL: a web-based server for the automatic identification of structural domains in proteins. Nucleic Acids Res (2005) 0.89
iMOT: an interactive package for the selection of spatially interacting motifs. Nucleic Acids Res (2004) 0.88
The proteome: structure, function and evolution. Philos Trans R Soc Lond B Biol Sci (2006) 0.87
Crystallization and preliminary analysis of active nitroalkane oxidase in three crystal forms. Acta Crystallogr D Biol Crystallogr (2004) 0.85
The conserved adenosine in helix 6 of Archaeoglobus fulgidus signal recognition particle RNA initiates SRP assembly. Archaea (2004) 0.84
The Armadillo repeat gene ZAK IXIK promotes Arabidopsis early embryo and endosperm development through a distinctive gametophytic maternal effect. Plant Cell (2012) 0.81
Euglena gracilis and Trypanosomatids possess common patterns in predicted mitochondrial targeting presequences. J Mol Evol (2012) 0.80
Prediction of volatile anesthetic binding sites in proteins. Biophys J (2006) 0.79
Selection shapes the robustness of ligand-binding amino acids. J Mol Evol (2013) 0.78
On the modeling of snake venom serine proteinase interactions with benzamidine-based thrombin inhibitors. Protein Sci (2004) 0.78
Citing a Data Repository: A Case Study of the Protein Data Bank. PLoS One (2015) 0.77
Domain altering SNPs in the human proteome and their impact on signaling pathways. PLoS One (2010) 0.76
RAB-10 Promotes EHBP-1 Bridging of Filamentous Actin and Tubular Recycling Endosomes. PLoS Genet (2016) 0.75
Accelerating physical simulations of proteins by leveraging external knowledge. Wiley Interdiscip Rev Comput Mol Sci (2017) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
The Protein Data Bank. Nucleic Acids Res (2000) 187.10
The Protein Data Bank: a computer-based archival file for macromolecular structures. J Mol Biol (1977) 90.57
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res (2003) 52.80
The Protein Data Bank: unifying the archive. Nucleic Acids Res (2002) 12.37
Macromolecular Crystallographic Information File. Methods Enzymol (1997) 11.94
PQS: a protein quaternary structure file server. Trends Biochem Sci (1998) 9.24
Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics (2001) 9.11
The Protein Data Bank and structural genomics. Nucleic Acids Res (2003) 8.34
Protein modelling for all. Trends Biochem Sci (1999) 4.41
The PDB data uniformity project. Nucleic Acids Res (2001) 3.65
An ontology driven architecture for derived representations of macromolecular structure. Bioinformatics (2002) 1.97
STING Millennium: A web-based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence. Nucleic Acids Res (2003) 1.64
Design and implementation of a collaborative molecular graphics environment. J Mol Graph Model (2001) 1.30
Protein data representation and query using optimized data decomposition. Comput Appl Biosci (1997) 1.19
Genome-wide atlas of gene expression in the adult mouse brain. Nature (2006) 28.02
Prevalence of diabetes among men and women in China. N Engl J Med (2010) 19.98
Systematic identification of genomic markers of drug sensitivity in cancer cells. Nature (2012) 15.91
The Protein Data Bank. Acta Crystallogr D Biol Crystallogr (2002) 14.44
Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. Nat Genet (2011) 13.25
The Protein Data Bank: unifying the archive. Nucleic Acids Res (2002) 12.37
Plasma HDL cholesterol and risk of myocardial infarction: a mendelian randomisation study. Lancet (2012) 12.10
The Protein Data Bank and structural genomics. Nucleic Acids Res (2003) 8.34
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. Nucleic Acids Res (2005) 7.81
The RCSB Protein Data Bank: redesigned web site and web services. Nucleic Acids Res (2010) 7.68
MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res (2006) 7.57
The immune epitope database and analysis resource: from vision to blueprint. PLoS Biol (2005) 7.40
Copy number analysis indicates monoclonal origin of lethal metastatic prostate cancer. Nat Med (2009) 6.61
The RCSB PDB information portal for structural genomics. Nucleic Acids Res (2006) 6.36
A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium. Nat Genet (2009) 6.31
RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). RNA (2008) 5.94
The RCSB Protein Data Bank: new resources for research and education. Nucleic Acids Res (2012) 5.73
RNAML: a standard syntax for exchanging RNA information. RNA (2002) 5.34
The oyster genome reveals stress adaptation and complexity of shell formation. Nature (2012) 5.30
Selective small-molecule inhibitor reveals critical mitotic functions of human CDK1. Proc Natl Acad Sci U S A (2006) 5.16
Remediation of the protein data bank archive. Nucleic Acids Res (2007) 4.89
An outbreak of hand, foot, and mouth disease associated with subgenotype C4 of human enterovirus 71 in Shandong, China. J Clin Virol (2009) 4.62
miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay. Science (2012) 4.44
Outcome of the first electron microscopy validation task force meeting. Structure (2012) 4.35
TargetDB: a target registration database for structural genomics projects. Bioinformatics (2004) 4.17
Tools for the automatic identification and classification of RNA base pairs. Nucleic Acids Res (2003) 4.12
Genetic variants influencing circulating lipid levels and risk of coronary artery disease. Arterioscler Thromb Vasc Biol (2010) 4.08
A parsimonious model for gene regulation by miRNAs. Science (2011) 3.79
A community resource benchmarking predictions of peptide binding to MHC-I molecules. PLoS Comput Biol (2006) 3.73
PDBML: the representation of archival macromolecular structure data in XML. Bioinformatics (2004) 3.64
The RNA Ontology Consortium: an open invitation to the RNA community. RNA (2006) 3.60
Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome. Mol Cell (2008) 3.58
An active role for tRNA in decoding beyond codon:anticodon pairing. Science (2005) 3.49
Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin. Nat Chem Biol (2010) 3.44
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res (2010) 3.34
EMDataBank.org: unified data resource for CryoEM. Nucleic Acids Res (2010) 3.32
Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Nature (2011) 3.19
The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release. Cell (2004) 3.18
Design of the Coronary ARtery DIsease Genome-Wide Replication And Meta-Analysis (CARDIoGRAM) Study: A Genome-wide association meta-analysis involving more than 22 000 cases and 60 000 controls. Circ Cardiovasc Genet (2010) 3.15
Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank. Acta Crystallogr D Biol Crystallogr (2004) 3.11
Gene dosage of the common variant 9p21 predicts severity of coronary artery disease. J Am Coll Cardiol (2010) 3.07
Functional interrogation of the kinome using nucleotide acyl phosphates. Biochemistry (2007) 3.01
The design and implementation of the immune epitope database and analysis resource. Immunogenetics (2005) 3.00
Hypusine-containing protein eIF5A promotes translation elongation. Nature (2009) 2.99
Catabolite activator protein: DNA binding and transcription activation. Curr Opin Struct Biol (2004) 2.91
Potential clinical and economic consequences of noncardiac incidental findings on cardiac computed tomography. J Am Coll Cardiol (2009) 2.76
In situ kinase profiling reveals functionally relevant properties of native kinases. Chem Biol (2011) 2.69
Structural basis of transcription activation: the CAP-alpha CTD-DNA complex. Science (2002) 2.67
Fidelity at the molecular level: lessons from protein synthesis. Cell (2009) 2.65
Comprehensive genomic analysis of rhabdomyosarcoma reveals a landscape of alterations affecting a common genetic axis in fusion-positive and fusion-negative tumors. Cancer Discov (2014) 2.64
Ambient air pollution, birth weight and preterm birth: a systematic review and meta-analysis. Environ Res (2012) 2.63
Darbepoetin alpha for the treatment of anemia in patients with active cancer not receiving chemotherapy or radiotherapy: results of a phase III, multicenter, randomized, double-blind, placebo-controlled study. J Clin Oncol (2008) 2.60
Prevalence of cardiovascular disease risk factor in the Chinese population: the 2007-2008 China National Diabetes and Metabolic Disorders Study. Eur Heart J (2011) 2.57
Substrate-assisted catalysis of peptide bond formation by the ribosome. Nat Struct Mol Biol (2004) 2.53
Activation of the cardiac proteasome during pressure overload promotes ventricular hypertrophy. Circulation (2006) 2.50
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proc Natl Acad Sci U S A (2014) 2.42
Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucleic Acids Res (2003) 2.37
A roadmap for the immunomics of category A-C pathogens. Immunity (2005) 2.36
The hybrid state of tRNA binding is an authentic translation elongation intermediate. Nat Struct Mol Biol (2006) 2.32
Data deposition and annotation at the worldwide protein data bank. Mol Biotechnol (2008) 2.30
Pre-calculated protein structure alignments at the RCSB PDB website. Bioinformatics (2010) 2.28
Prognostic value of 64-slice cardiac computed tomography severity of coronary artery disease, coronary atherosclerosis, and left ventricular ejection fraction. J Am Coll Cardiol (2010) 2.21
Ligand Depot: a data warehouse for ligands bound to macromolecules. Bioinformatics (2004) 2.21
Dom34:Hbs1 promotes subunit dissociation and peptidyl-tRNA drop-off to initiate no-go decay. Science (2010) 2.19
Diagnostic accuracy and impact of computed tomographic coronary angiography on utilization of invasive coronary angiography. Circ Cardiovasc Imaging (2009) 2.16
Quality control by the ribosome following peptide bond formation. Nature (2008) 2.15
Molecular evidence of persistent epidemic and evolution of subgenotype B1 coxsackievirus A16-associated hand, foot, and mouth disease in China. J Clin Microbiol (2009) 2.11
Prognostic value of CT angiography in coronary bypass patients. JACC Cardiovasc Imaging (2011) 2.10
Repetitive ischemia by coronary stenosis induces a novel window of ischemic preconditioning. Circulation (2008) 2.09
The characterization of high-fat diet and multiple low-dose streptozotocin induced type 2 diabetes rat model. Exp Diabetes Res (2009) 2.08
MMDB: 3D structures and macromolecular interactions. Nucleic Acids Res (2011) 2.06
Outcome of a workshop on applications of protein models in biomedical research. Structure (2009) 2.05