Published in AMIA Annu Symp Proc on January 01, 2003
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinformatics (2007) 12.76
The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus. Cell (2009) 7.88
Manual curation is not sufficient for annotation of genomic databases. Bioinformatics (2007) 4.16
Essie: a concept-based search engine for structured biomedical text. J Am Med Inform Assoc (2007) 3.86
Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation. PLoS One (2010) 2.26
Extraction of semantic biomedical relations from text using conditional random fields. BMC Bioinformatics (2008) 2.12
Finding GeneRIFs via gene ontology annotations. Pac Symp Biocomput (2006) 1.77
MILANO--custom annotation of microarray results using automatic literature searches. BMC Bioinformatics (2005) 1.77
GeneDistiller--distilling candidate genes from linkage intervals. PLoS One (2008) 1.77
VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. Nucleic Acids Res (2008) 1.71
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GOAnnotator: linking protein GO annotations to evidence text. J Biomed Discov Collab (2006) 1.66
GeneRIF quality assurance as summary revision. Pac Symp Biocomput (2007) 1.60
DEGAS: de novo discovery of dysregulated pathways in human diseases. PLoS One (2010) 1.59
Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases. PLoS One (2011) 1.51
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Systems genetics of metabolism: the use of the BXD murine reference panel for multiscalar integration of traits. Cell (2012) 1.48
Phenotype ontologies for mouse and man: bridging the semantic gap. Dis Model Mech (2010) 1.28
Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts. BMC Bioinformatics (2005) 1.25
Integration of open access literature into the RCSB Protein Data Bank using BioLit. BMC Bioinformatics (2010) 1.22
Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information. J Med Libr Assoc (2010) 1.13
GeneRIF indexing: sentence selection based on machine learning. BMC Bioinformatics (2013) 1.11
Semantic role labeling for protein transport predicates. BMC Bioinformatics (2008) 1.10
Meta-analysis approach identifies candidate genes and associated molecular networks for type-2 diabetes mellitus. BMC Genomics (2008) 1.08
Large-scale directional relationship extraction and resolution. BMC Bioinformatics (2008) 1.07
Chapter 15: disease gene prioritization. PLoS Comput Biol (2013) 1.05
Inferring novel gene-disease associations using Medical Subject Heading Over-representation Profiles. Genome Med (2012) 1.01
An integrative network approach to map the transcriptome to the phenome. J Comput Biol (2009) 0.95
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. Database (Oxford) (2016) 0.95
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Meta-analysis of cancer gene expression signatures reveals new cancer genes, SAGE tags and tumor associated regions of co-regulation. Nucleic Acids Res (2010) 0.94
Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data. Adv Bioinformatics (2010) 0.87
Prioritizing disease-linked variants, genes, and pathways with an interactive whole-genome analysis pipeline. Hum Mutat (2014) 0.85
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A novel method for identifying disease associated protein complexes based on functional similarity protein complex networks. Algorithms Mol Biol (2015) 0.77
A novel method for gathering and prioritizing disease candidate genes based on construction of a set of disease-related MeSH® terms. BMC Bioinformatics (2014) 0.76
Fusing literature and full network data improves disease similarity computation. BMC Bioinformatics (2016) 0.75
Selective extracellular vesicle exclusion of miR-142-3p by oral cancer cells promotes both internal and extracellular malignant phenotypes. Oncotarget (2017) 0.75
A functional module-based exploration between inflammation and cancer in esophagus. Sci Rep (2015) 0.75
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res (2003) 52.80
Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. Proc AMIA Symp (2001) 40.22
Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids Res (2002) 19.40
The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Res (2002) 12.20
NCBI Reference Sequence project: update and current status. Nucleic Acids Res (2003) 11.30
Beyond synonymy: exploiting the UMLS semantics in mapping vocabularies. Proc AMIA Symp (1998) 6.28
The clinical value of computerized information services. A review of 98 randomized clinical trials. Arch Fam Med (1996) 4.00
Playing biology's name game: identifying protein names in scientific text. Pac Symp Biocomput (2003) 3.03
Interventions aimed at improving immunization rates. Cochrane Database Syst Rev (2002) 2.21
The protein data bank. Bridging the gap between the sequence and 3D structure world. Genetica (1999) 1.10
The NLM Indexing Initiative's Medical Text Indexer. Stud Health Technol Inform (2004) 4.72
Using literature-based discovery to identify disease candidate genes. Int J Med Inform (2005) 3.16
Towards linking patients and clinical information: detecting UMLS concepts in e-mail. J Biomed Inform (2003) 2.64
A study of abbreviations in MEDLINE abstracts. Proc AMIA Symp (2002) 2.44
Semantic relations asserting the etiology of genetic diseases. AMIA Annu Symp Proc (2003) 2.32
UMLS language and vocabulary tools. AMIA Annu Symp Proc (2003) 2.21
Finding UMLS Metathesaurus concepts in MEDLINE. Proc AMIA Symp (2002) 2.10
Semi-automatic indexing of full text biomedical articles. AMIA Annu Symp Proc (2005) 2.04
Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide. J Am Med Inform Assoc (2003) 1.97
Multiple approaches to fine-grained indexing of the biomedical literature. Pac Symp Biocomput (2007) 1.58
A recent advance in the automatic indexing of the biomedical literature. J Biomed Inform (2008) 1.57
Evidence-based retrieval in evidence-based medicine. J Med Libr Assoc (2004) 1.55
Methodology for creating UMLS content views appropriate for biomedical natural language processing. AMIA Annu Symp Proc (2008) 1.51
Knowledge-based biomedical word sense disambiguation: comparison of approaches. BMC Bioinformatics (2010) 1.38
Combining lexical and semantic methods of inter-terminology mapping using the UMLS. Stud Health Technol Inform (2007) 1.30
Using wireless handheld computers to seek information at the point of care: an evaluation by clinicians. J Am Med Inform Assoc (2007) 1.26
Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation. BMC Bioinformatics (2011) 1.21
Fine-grained indexing of the biomedical literature: MeSH subheading attachment for a MEDLINE indexing tool. AMIA Annu Symp Proc (2007) 1.21
UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. J Biomed Inform (2010) 1.20
Transcriptional profiling identifies extensive downregulation of extracellular matrix gene expression in sarcopenic rat soleus muscle. Physiol Genomics (2003) 1.17
MeSH indexing based on automatically generated summaries. BMC Bioinformatics (2013) 1.14
Extracting Rx information from clinical narrative. J Am Med Inform Assoc (2010) 1.14
GeneRIF indexing: sentence selection based on machine learning. BMC Bioinformatics (2013) 1.11
MEDLINE as a source of just-in-time answers to clinical questions. AMIA Annu Symp Proc (2006) 1.11
Selected Contribution: Identification of differentially expressed genes between young and old rat soleus muscle during recovery from immobilization-induced atrophy. J Appl Physiol (1985) (2003) 1.10
Expression profiling identifies dysregulation of myosin heavy chains IIb and IIx during limb immobilization in the soleus muscles of old rats. J Physiol (2003) 1.07
Improving literature based discovery support by genetic knowledge integration. Stud Health Technol Inform (2003) 1.03
A retrospective cohort study of structured abstracts in MEDLINE, 1992-2006. J Med Libr Assoc (2011) 1.03
Evaluation of French and English MeSH indexing systems with a parallel corpus. AMIA Annu Symp Proc (2005) 1.02
Collocation analysis for UMLS knowledge-based word sense disambiguation. BMC Bioinformatics (2011) 1.02
The need for a multidisciplinary team approach to life science workflows. J Med Libr Assoc (2007) 0.88
A bottom-up approach to MEDLINE indexing recommendations. AMIA Annu Symp Proc (2011) 0.88
Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts. BMC Bioinformatics (2011) 0.87
SNOMED CT coding variation and grouping for "other findings" in a longitudinal study on urea cycle disorders. AMIA Annu Symp Proc (2008) 0.84
Using discourse analysis to improve text categorization in MEDLINE. Stud Health Technol Inform (2007) 0.82
Natural Language Processing Versus Content-Based Image Analysis for Medical Document Retrieval. J Am Soc Inf Sci Technol (2008) 0.81
A method for verifying a vector-based text classification system. AMIA Annu Symp Proc (2008) 0.78
Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. Bioinformatics (2009) 0.75
Determining prominent subdomains in medicine. AMIA Annu Symp Proc (2005) 0.75
Standardized documentation in physical therapy: testing of validity and reliability of the PT-ITC and mapping it to the Metathesaurus. AMIA Annu Symp Proc (2008) 0.75
Evidence-based retrieval in E-health. Stud Health Technol Inform (2004) 0.75