Published in Nucleic Acids Res on January 16, 2004
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
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Co-phylog: an assembly-free phylogenomic approach for closely related organisms. Nucleic Acids Res (2013) 0.97
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Rapid phylogenetic and functional classification of short genomic fragments with signature peptides. BMC Res Notes (2012) 0.93
Histidine phosphotransfer proteins in fungal two-component signal transduction pathways. Eukaryot Cell (2013) 0.91
Fast algorithms for computing sequence distances by exhaustive substring composition. Algorithms Mol Biol (2008) 0.90
Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs. Nucleic Acids Res (2011) 0.86
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Optimal neighborhood indexing for protein similarity search. BMC Bioinformatics (2008) 0.75
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MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
A comparison of scoring functions for protein sequence profile alignment. Bioinformatics (2004) 6.44
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PILER-CR: fast and accurate identification of CRISPR repeats. BMC Bioinformatics (2007) 4.28
PILER: identification and classification of genomic repeats. Bioinformatics (2005) 3.99
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Quality measures for protein alignment benchmarks. Nucleic Acids Res (2010) 2.23
Optimizing substitution matrix choice and gap parameters for sequence alignment. BMC Bioinformatics (2009) 0.96