The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533.

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Published in Proc Natl Acad Sci U S A on February 24, 2004

Authors

R David Pridmore1, Bernard Berger, Frank Desiere, David Vilanova, Caroline Barretto, Anne-Cecile Pittet, Marie-Camille Zwahlen, Martine Rouvet, Eric Altermann, Rodolphe Barrangou, Beat Mollet, Annick Mercenier, Todd Klaenhammer, Fabrizio Arigoni, Mark A Schell

Author Affiliations

1: Department of Nutrition and Health, Nestlé Research Center, PO Box 44, Vers-chez-les-Blanc, 1000 Lausanne 26, Switzerland. raymond-david.pridmore@rdls.nestle.com

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Strategies to reduce methane emissions from farmed ruminants grazing on pasture. Vet J (2010) 1.08

Oral immunization of mice with lactic acid bacteria producing Helicobacter pylori urease B subunit partially protects against challenge with Helicobacter felis. J Infect Dis (2005) 1.08

Genomics of lactic acid bacteria. FEMS Microbiol Lett (2008) 1.07

The role of cell surface architecture of lactobacilli in host-microbe interactions in the gastrointestinal tract. Mediators Inflamm (2013) 1.07

Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus. PLoS One (2012) 1.07

The combination of CRISPR-MVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp. enterica serovar Enteritidis. Food Microbiol (2012) 1.06