Published in Genome Res on April 01, 2004
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SpBase: the sea urchin genome database and web site. Nucleic Acids Res (2008) 1.56
A physical map of the bovine genome. Genome Biol (2007) 1.56
The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny. J Bacteriol (2006) 1.55
A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. Bioinformatics (2009) 1.55
Phenotypic variability of osteogenesis imperfecta type V caused by an IFITM5 mutation. J Bone Miner Res (2013) 1.44
MirZ: an integrated microRNA expression atlas and target prediction resource. Nucleic Acids Res (2009) 1.44
Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project. Genome Res (2004) 1.36
Whole-exome sequencing identifies mutations in the nucleoside transporter gene SLC29A3 in dysosteosclerosis, a form of osteopetrosis. Hum Mol Genet (2012) 1.31
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Physical map-assisted whole-genome shotgun sequence assemblies. Genome Res (2006) 1.10
Linkage mapping bovine EST-based SNP. BMC Genomics (2005) 1.07
Improving Phrap-based assembly of the rat using "reliable" overlaps. PLoS One (2008) 1.06
Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium. PLoS One (2007) 1.06
Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction. BMC Bioinformatics (2010) 1.05
Current concepts of follicle-stimulating hormone receptor gene regulation. Biol Reprod (2010) 1.05
Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication. Gigascience (2014) 1.01
Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer. BMC Bioinformatics (2012) 0.99
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI. BMC Bioinformatics (2011) 0.95
Improving genome assemblies and annotations for nonhuman primates. ILAR J (2013) 0.91
MicroRNA enrichment among short 'ultraconserved' sequences in insects. Nucleic Acids Res (2006) 0.89
Unraveling genomic variation from next generation sequencing data. BioData Min (2013) 0.86
Osteogenesis imperfecta without features of type V caused by a mutation in the IFITM5 gene. J Bone Miner Res (2013) 0.84
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Sweetness and light: illuminating the honey bee genome. Insect Mol Biol (2006) 0.81
Organization of the variable region of the immunoglobulin heavy-chain gene locus of the rat. Immunogenetics (2010) 0.79
Multiple mineralocorticoid response elements localized in different introns regulate intermediate conductance K+ (Kcnn4) channel expression in the rat distal colon. PLoS One (2014) 0.78
Re-assembly of the genome of Francisella tularensis subsp. holarctica OSU18. PLoS One (2008) 0.78
An Sp185/333 gene cluster from the purple sea urchin and putative microsatellite-mediated gene diversification. BMC Genomics (2010) 0.78
Do echinoderm genomes measure up? Mar Genomics (2015) 0.76
Computational biology methods and their application to the comparative genomics of endocellular symbiotic bacteria of insects. Biol Proced Online (2009) 0.76
Quantification of Azospirillum brasilense FP2 Bacteria in Wheat Roots by Strain-Specific Quantitative PCR. Appl Environ Microbiol (2015) 0.75
Evaluating genome architecture of a complex region via generalized bipartite matching. BMC Bioinformatics (2013) 0.75
Sequencing, de novo assembling and annotating the genome of the endangered Chinese crocodile lizard Shinisaurus crocodilurus. Gigascience (2017) 0.75
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A whole-genome assembly of Drosophila. Science (2000) 38.48
Human-mouse alignments with BLASTZ. Genome Res (2003) 35.49
Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature (2004) 24.40
ARACHNE: a whole-genome shotgun assembler. Genome Res (2002) 22.72
Recent segmental duplications in the human genome. Science (2002) 21.30
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science (2002) 21.26
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science (2002) 20.59
The genome sequence of the malaria mosquito Anopheles gambiae. Science (2002) 20.36
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Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res (2002) 17.31
The phusion assembler. Genome Res (2003) 15.25
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Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res (2003) 12.30
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science (2002) 11.11
Assembly of the working draft of the human genome with GigAssembler. Genome Res (2001) 8.23
Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol (2002) 8.07
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The dog genome: survey sequencing and comparative analysis. Science (2003) 5.84
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Recent segmental duplications in the working draft assembly of the brown Norway rat. Genome Res (2004) 1.72
Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project. Genome Res (2004) 1.36
Barnacle: an assembly algorithm for clone-based sequences of whole genomes. Gene (2003) 0.98
Identification of mixups among DNA sequencing plates. Bioinformatics (2002) 0.95
A map of human genome variation from population-scale sequencing. Nature (2010) 121.13
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
A second generation human haplotype map of over 3.1 million SNPs. Nature (2007) 85.39
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature (2007) 75.09
The complete genome of an individual by massively parallel DNA sequencing. Nature (2008) 52.81
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res (2005) 44.08
Integrating common and rare genetic variation in diverse human populations. Nature (2010) 32.30
Somatic mutations affect key pathways in lung adenocarcinoma. Nature (2008) 30.02
Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature (2004) 24.40
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A (2002) 20.48
Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature (2010) 19.68
Direct selection of human genomic loci by microarray hybridization. Nat Methods (2007) 17.73
Genome-wide detection and characterization of positive selection in human populations. Nature (2007) 17.27
Characterizing the cancer genome in lung adenocarcinoma. Nature (2007) 16.48
Evolutionary and biomedical insights from the rhesus macaque genome. Science (2007) 16.21
VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics (2009) 16.04
Clinical whole-exome sequencing for the diagnosis of mendelian disorders. N Engl J Med (2013) 15.85
Patterns and rates of exonic de novo mutations in autism spectrum disorders. Nature (2012) 13.71
Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy. N Engl J Med (2010) 13.57
A systematic survey of loss-of-function variants in human protein-coding genes. Science (2012) 12.25
Personalized copy number and segmental duplication maps using next-generation sequencing. Nat Genet (2009) 11.73
Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1. Science (2011) 11.12
SNPdetector: a software tool for sensitive and accurate SNP detection. PLoS Comput Biol (2005) 10.04
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res (2004) 9.18
Complete Khoisan and Bantu genomes from southern Africa. Nature (2010) 9.06
A high-resolution map of human evolutionary constraint using 29 mammals. Nature (2011) 8.67
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res (2005) 8.38
Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature (2012) 8.31
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
The genome of the cucumber, Cucumis sativus L. Nat Genet (2009) 8.19
A catalog of reference genomes from the human microbiome. Science (2010) 8.10
Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol (2002) 8.07
The Drosophila melanogaster Genetic Reference Panel. Nature (2012) 7.94
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Demographic history and rare allele sharing among human populations. Proc Natl Acad Sci U S A (2011) 7.36
Performance comparison of exome DNA sequencing technologies. Nat Biotechnol (2011) 7.11
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res (2007) 7.05
The DNA sequence of the human X chromosome. Nature (2005) 6.97
The genome of the model beetle and pest Tribolium castaneum. Nature (2008) 6.50
28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Res (2007) 6.42
The genome of the sea urchin Strongylocentrotus purpuratus. Science (2006) 6.41
Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay. Genome Res (2005) 6.32
Genetics. No longer de-identified. Science (2006) 6.20
Enteric defensins are essential regulators of intestinal microbial ecology. Nat Immunol (2009) 6.10
Performance comparison of whole-genome sequencing platforms. Nat Biotechnol (2011) 5.79
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (2010) 5.56
Inactivating mutations in NPC1L1 and protection from coronary heart disease. N Engl J Med (2014) 4.94
High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet (2008) 4.86
A SNP discovery method to assess variant allele probability from next-generation resequencing data. Genome Res (2009) 4.78
Clan genomics and the complex architecture of human disease. Cell (2011) 4.53