Published in Proteins on June 01, 2004
Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard. Acta Crystallogr D Biol Crystallogr (2009) 6.47
Quantification of mRNA and protein and integration with protein turnover in a bacterium. Mol Syst Biol (2011) 2.31
Transcriptional analysis of the conserved ftsZ gene cluster in Mycoplasma genitalium and Mycoplasma pneumoniae. J Bacteriol (2005) 1.05
The highly conserved MraZ protein is a transcriptional regulator in Escherichia coli. J Bacteriol (2014) 0.87
Rapid model building of alpha-helices in electron-density maps. Acta Crystallogr D Biol Crystallogr (2010) 0.87
MraZ from Escherichia coli: cloning, purification, crystallization and preliminary X-ray analysis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 0.78
Rapid model building of beta-sheets in electron-density maps. Acta Crystallogr D Biol Crystallogr (2010) 0.76
Rapid chain tracing of polypeptide backbones in electron-density maps. Acta Crystallogr D Biol Crystallogr (2010) 0.75
Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity. Proc Natl Acad Sci U S A (2008) 17.41
Protein production and purification. Nat Methods (2008) 3.97
Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions. Proc Natl Acad Sci U S A (2009) 2.63
A family of phosphodiesterase inhibitors discovered by cocrystallography and scaffold-based drug design. Nat Biotechnol (2005) 2.51
Local feature frequency profile: a method to measure structural similarity in proteins. Proc Natl Acad Sci U S A (2004) 2.03
Capturing hammerhead ribozyme structures in action by modulating general base catalysis. PLoS Biol (2008) 1.95
A global representation of the protein fold space. Proc Natl Acad Sci U S A (2003) 1.88
Structural basis for the activity of drugs that inhibit phosphodiesterases. Structure (2004) 1.84
Optimum solubility (OS) screening: an efficient method to optimize buffer conditions for homogeneity and crystallization of proteins. Acta Crystallogr D Biol Crystallogr (2004) 1.76
Overview of structural genomics: from structure to function. Curr Opin Chem Biol (2003) 1.68
A glutamine switch mechanism for nucleotide selectivity by phosphodiesterases. Mol Cell (2004) 1.64
Global mapping of the protein structure space and application in structure-based inference of protein function. Proc Natl Acad Sci U S A (2005) 1.59
Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states. J Mol Biol (2002) 1.54
Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications. Proc Natl Acad Sci U S A (2005) 1.54
Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution. Proc Natl Acad Sci U S A (2009) 1.44
Global extent of horizontal gene transfer. Proc Natl Acad Sci U S A (2007) 1.43
Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs). Proc Natl Acad Sci U S A (2011) 1.36
Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome. J Mol Biol (2004) 1.30
Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. J Biol Chem (2005) 1.29
Crystal structure of conserved hypothetical protein Aq1575 from Aquifex aeolicus. Proc Natl Acad Sci U S A (2002) 1.22
Structural characterization of an iron-sulfur cluster assembly protein IscU in a zinc-bound form. Proteins (2005) 1.18
Structural genomics of minimal organisms and protein fold space. J Struct Funct Genomics (2005) 1.16
Crystal structure of NusA from Thermotoga maritima and functional implication of the N-terminal domain. Biochemistry (2003) 1.15
On-column protein refolding for crystallization. J Struct Funct Genomics (2005) 1.15
Evolution of protein structural classes and protein sequence families. Proc Natl Acad Sci U S A (2006) 1.14
Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method. Proc Natl Acad Sci U S A (2009) 1.12
Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions. Proc Natl Acad Sci U S A (2009) 1.12
Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain. Proc Natl Acad Sci U S A (2004) 1.11
High-throughput T7 LIC vector for introducing C-terminal poly-histidine tags with variable lengths without extra sequences. Protein Expr Purif (2008) 1.11
Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes. Nucleic Acids Res (2003) 1.09
Structure-based functional inference in structural genomics. J Struct Funct Genomics (2003) 1.08
Design of a data model for developing laboratory information management and analysis systems for protein production. Proteins (2005) 1.06
Structural and molecular genetic insight into a widespread sulfur oxidation pathway. J Mol Biol (2008) 1.05
Structure of the hypothetical protein AQ_1354 from Aquifex aeolicus. Acta Crystallogr D Biol Crystallogr (2003) 1.05
Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima. Protein Sci (2003) 1.04
Fold prediction of helical proteins using torsion angle dynamics and predicted restraints. Proc Natl Acad Sci U S A (2002) 1.03
Crystal structure of the multidrug efflux transporter AcrB at 3.1A resolution reveals the N-terminal region with conserved amino acids. J Struct Biol (2006) 1.03
Protein conformational space in higher order phi-Psi maps. Proc Natl Acad Sci U S A (2005) 1.03
Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii. J Biol Chem (2004) 1.00
Chemicals that modulate stem cell differentiation. Proc Natl Acad Sci U S A (2008) 0.99
SU9516: biochemical analysis of cdk inhibition and crystal structure in complex with cdk2. Biochem Biophys Res Commun (2003) 0.98
Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus at 2.6 A resolution: a novel methyltransferase fold. Proteins (2003) 0.98
Target selection and deselection at the Berkeley Structural Genomics Center. Proteins (2006) 0.98
Crystal structure of MJ1247 protein from M. jannaschii at 2.0 A resolution infers a molecular function of 3-hexulose-6-phosphate isomerase. Structure (2002) 0.97
Crystal structure of a PhoU protein homologue: a new class of metalloprotein containing multinuclear iron clusters. J Biol Chem (2005) 0.95
Effect of osmotic stress and heat shock in recombinant protein overexpression and crystallization. Protein Expr Purif (2006) 0.95
Crystal structure of the "PhoU-like" phosphate uptake regulator from Aquifex aeolicus. J Bacteriol (2005) 0.95
An automated small-scale protein expression and purification screening provides beneficial information for protein production. J Struct Funct Genomics (2004) 0.94
Crystal structure of a hypothetical protein, TM841 of Thermotoga maritima, reveals its function as a fatty acid-binding protein. Proteins (2003) 0.94
Structural basis for CDK6 activation by a virus-encoded cyclin. Nat Struct Biol (2002) 0.93
Structure of OsmC from Escherichia coli: a salt-shock-induced protein. Acta Crystallogr D Biol Crystallogr (2004) 0.91
Crystal structure of flavin binding to FAD synthetase of Thermotoga maritima. Proteins (2005) 0.91
A method for evaluating the structural quality of protein models by using higher-order phi-psi pairs scoring. Proc Natl Acad Sci U S A (2006) 0.91
Crystal structures of an NAD kinase from Archaeoglobus fulgidus in complex with ATP, NAD, or NADP. J Mol Biol (2005) 0.91
Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution. J Struct Funct Genomics (2003) 0.90
On the mechanism of chaperone activity of the small heat-shock protein of Methanococcus jannaschii. Proc Natl Acad Sci U S A (2003) 0.90