Structural basis of single-stranded RNA recognition.

Sequence-specific binding of single-stranded RNA: is there a code for recognition? Nucleic Acids Res (2006) 2.89

RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates. Plant Cell (2005) 2.68

Structural basis for recognition and sequestration of UUU(OH) 3' temini of nascent RNA polymerase III transcripts by La, a rheumatic disease autoantigen. Mol Cell (2006) 2.63

Using RNA secondary structures to guide sequence motif finding towards single-stranded regions. Nucleic Acids Res (2006) 1.55

RNA sequence- and shape-dependent recognition by proteins in the ribonucleoprotein particle. EMBO Rep (2005) 1.48

Nonspecific recognition is achieved in Pot1pC through the use of multiple binding modes. Structure (2012) 1.47

Crystal structure of Escherichia coli polynucleotide phosphorylase core bound to RNase E, RNA and manganese: implications for catalytic mechanism and RNA degradosome assembly. J Mol Biol (2009) 1.26

A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination. Nat Struct Mol Biol (2010) 1.18

Structural and biochemical characterization of the yeast exosome component Rrp40. EMBO Rep (2006) 1.16

Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure (2011) 1.01

Principles of mRNA transport in yeast. Cell Mol Life Sci (2011) 0.99

Finding the target sites of RNA-binding proteins. Wiley Interdiscip Rev RNA (2013) 0.99

The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A (2009) 0.94

Structural characterization of naturally occurring RNA single mismatches. Nucleic Acids Res (2010) 0.92

Short, synthetic and selectively 13C-labeled RNA sequences for the NMR structure determination of protein-RNA complexes. Nucleic Acids Res (2006) 0.88

Investigation of solvent effect and NMR shielding tensors of p53 tumor-suppressor gene in drug design. Int J Nanomedicine (2011) 0.82

The role of RNA conformation in RNA-protein recognition. RNA Biol (2015) 0.81

Bruno protein contains an expanded RNA recognition motif. Biochemistry (2009) 0.80

C. elegans RNA-binding protein GLD-1 recognizes its multiple targets using sequence, context, and structural information to repress translation. Worm (2013) 0.80

Hybridization Properties of RNA Containing 8-Methoxyguanosine and 8-Benzyloxyguanosine. PLoS One (2015) 0.79

Musashi 1 regulates the timing and extent of meiotic mRNA translational activation by promoting the use of specific CPEs. Nat Struct Mol Biol (2017) 0.77

Inhibition of pre-mRNA splicing by a synthetic Blom7α-interacting small RNA. PLoS One (2012) 0.75

Structural and biochemical analysis of the Hordeum vulgare L. HvGR-RBP1 protein, a glycine-rich RNA-binding protein involved in the regulation of barley plant development and stress response. Biochemistry (2014) 0.75

The sweet side of RNA regulation: glyceraldehyde-3-phosphate dehydrogenase as a noncanonical RNA-binding protein. Wiley Interdiscip Rev RNA (2015) 0.75

Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins. Nucleic Acids Res (2016) 0.75

Solvent effects on structural and thermochemical properties of p53 tumor-suppressor gene: a molecular modeling approach in drug design. Int J Nanomedicine (2011) 0.75

Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain. Nature (2003) 4.92

Nucleic acid 3'-end recognition by the Argonaute2 PAZ domain. Nat Struct Mol Biol (2004) 4.38

Intron removal requires proofreading of U2AF/3' splice site recognition by DEK. Science (2006) 2.52

NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1. Nat Struct Mol Biol (2010) 2.12

Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP. Mol Cell (2003) 2.00

Determinants of conformational dimerization of Mad2 and its inhibition by p31comet. EMBO J (2006) 1.89

High-resolution X-ray and NMR structures of the SMN Tudor domain: conformational variation in the binding site for symmetrically dimethylated arginine residues. J Mol Biol (2003) 1.84

The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double-stranded RNA recognition. EMBO Rep (2005) 1.63

Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF. Nature (2011) 1.57

NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease. J Biol Chem (2005) 1.47

Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2. EMBO J (2009) 1.44

U2AF-homology motif interactions are required for alternative splicing regulation by SPF45. Nat Struct Mol Biol (2007) 1.38

Recognition of a functional peroxisome type 1 target by the dynamic import receptor pex5p. Mol Cell (2006) 1.37

Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40. J Mol Biol (2002) 1.36

Structural basis for translational stalling by human cytomegalovirus and fungal arginine attenuator peptide. Mol Cell (2010) 1.35

Screening of fusion partners for high yield expression and purification of bioactive viscotoxins. Protein Expr Purif (2008) 1.31

Structural basis for dimethylarginine recognition by the Tudor domains of human SMN and SPF30 proteins. Nat Struct Mol Biol (2011) 1.29

The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization. RNA (2011) 1.26

X-ray crystallographic and NMR studies of the third KH domain of hnRNP K in complex with single-stranded nucleic acids. Structure (2005) 1.24

Structural basis for the cytoskeletal association of Bcr-Abl/c-Abl. Mol Cell (2005) 1.21

hnRNP A1 proofreads 3' splice site recognition by U2AF. Mol Cell (2012) 1.19

Topography for independent binding of alpha-helical and PPII-helical ligands to a peroxisomal SH3 domain. Mol Cell (2002) 1.17

Structural and biochemical characterization of the yeast exosome component Rrp40. EMBO Rep (2006) 1.16

Novel modes of protein-RNA recognition in the RNAi pathway. Curr Opin Struct Biol (2005) 1.15

Structure and ligand binding of the extended Tudor domain of D. melanogaster Tudor-SN. J Mol Biol (2009) 1.14

Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription. J Biol Chem (2005) 1.14

Structure of the intracellular domain of the amyloid precursor protein in complex with Fe65-PTB2. EMBO Rep (2008) 1.13

Crystal structure and nuclear magnetic resonance analyses of the SAND domain from glucocorticoid modulatory element binding protein-1 reveals deoxyribonucleic acid and zinc binding regions. Mol Endocrinol (2003) 1.10

In support of the BMRB. Nat Struct Mol Biol (2012) 1.09

Biochemical and NMR analyses of an SF3b155-p14-U2AF-RNA interaction network involved in branch point definition during pre-mRNA splicing. RNA (2006) 1.09

Structure and VP16 binding of the Mediator Med25 activator interaction domain. Nat Struct Mol Biol (2011) 1.08

Telethonin deficiency is associated with maladaptation to biomechanical stress in the mammalian heart. Circ Res (2011) 1.07

Dimerization and protein binding specificity of the U2AF homology motif of the splicing factor Puf60. J Biol Chem (2008) 1.06

A NMR strategy to unambiguously distinguish nucleic acid hairpin and duplex conformations applied to a Xist RNA A-repeat. Nucleic Acids Res (2008) 1.05

Dynamics in multi-domain protein recognition of RNA. Curr Opin Struct Biol (2012) 1.04

An efficient protocol for NMR-spectroscopy-based structure determination of protein complexes in solution. Angew Chem Int Ed Engl (2010) 1.03

Retracted Structure and functional analysis of the MYND domain. J Mol Biol (2006) 1.02

Structural features of Argonaute-GW182 protein interactions. Proc Natl Acad Sci U S A (2013) 1.01

Structural basis for competitive interactions of Pex14 with the import receptors Pex5 and Pex19. EMBO J (2009) 1.01

Automated evaluation of chemical shift perturbation spectra: New approaches to quantitative analysis of receptor-ligand interaction NMR spectra. J Biomol NMR (2004) 1.00

Structure and phosphatidylinositol-(3,4)-bisphosphate binding of the C-terminal PH domain of human pleckstrin. Structure (2005) 0.98

Structural basis for homodimerization of the Src-associated during mitosis, 68-kDa protein (Sam68) Qua1 domain. J Biol Chem (2010) 0.98

Structural analysis of large protein complexes using solvent paramagnetic relaxation enhancements. Angew Chem Int Ed Engl (2011) 0.97

A dual parameter FRET probe for measuring PKC and PKA activity in living cells. J Am Chem Soc (2006) 0.96

The DICE-binding activity of KH domain 3 of hnRNP K is affected by c-Src-mediated tyrosine phosphorylation. J Mol Biol (2006) 0.96

Structure of an atypical Tudor domain in the Drosophila Polycomblike protein. Protein Sci (2010) 0.94

The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif. Nucleic Acids Res (2006) 0.94

A glycopeptide dendrimer inhibitor of the galactose-specific lectin LecA and of Pseudomonas aeruginosa biofilms. Angew Chem Int Ed Engl (2011) 0.93

A target function for quaternary structural refinement from small angle scattering and NMR orientational restraints. Eur Biophys J (2006) 0.92

Transient electrostatic interactions dominate the conformational equilibrium sampled by multidomain splicing factor U2AF65: a combined NMR and SAXS study. J Am Chem Soc (2014) 0.92

De-novo design of antimicrobial peptides for plant protection. PLoS One (2013) 0.91

NMR assignment of the Drosophila Argonaute2 PAZ domain. J Biomol NMR (2004) 0.91

Structure of the Eps15-stonin2 complex provides a molecular explanation for EH-domain ligand specificity. EMBO J (2008) 0.91

Genetically encoded FRET probe for PKC activity based on pleckstrin. J Am Chem Soc (2004) 0.91

Site-specific variations of carbonyl chemical shift anisotropies in proteins. J Am Chem Soc (2004) 0.91

Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression. RNA (2002) 0.90

Structural and functional analysis of the DEAF-1 and BS69 MYND domains. PLoS One (2013) 0.89

Dynamic effects on j-couplings across hydrogen bonds in proteins. J Am Chem Soc (2003) 0.89

Conformational plasticity of the lipid transfer protein SCP2. Biochemistry (2007) 0.89

Chromodomains read the arginine code of post-translational targeting. Nat Struct Mol Biol (2012) 0.89

Structure and dynamics of the human pleckstrin DEP domain: distinct molecular features of a novel DEP domain subfamily. Proteins (2005) 0.88

NMR and small-angle scattering-based structural analysis of protein complexes in solution. J Struct Biol (2010) 0.88

The multiple Tudor domain-containing protein TDRD1 is a molecular scaffold for mouse Piwi proteins and piRNA biogenesis factors. RNA (2012) 0.88

Combining NMR and small angle X-ray and neutron scattering in the structural analysis of a ternary protein-RNA complex. J Biomol NMR (2013) 0.87

Thioredoxin as a fusion tag for carrier-driven crystallization. Protein Sci (2008) 0.87

High-resolution structures of the IgM Fc domains reveal principles of its hexamer formation. Proc Natl Acad Sci U S A (2013) 0.86

Structure, phosphorylation and U2AF65 binding of the N-terminal domain of splicing factor 1 during 3'-splice site recognition. Nucleic Acids Res (2012) 0.86

A novel Pex14 protein-interacting site of human Pex5 is critical for matrix protein import into peroxisomes. J Biol Chem (2013) 0.86

Tudor hooks up with DNA repair. Nat Struct Mol Biol (2007) 0.85

Induced folding of the U2AF35 RRM upon binding to U2AF65. FEBS Lett (2002) 0.84

Efficient detection of hydrogen bonds in dynamic regions of RNA by sensitivity-optimized NMR pulse sequences. Angew Chem Int Ed Engl (2013) 0.83

Adhesion dance with raver. Structure (2009) 0.83

Solution structure and molecular interactions of lamin B receptor Tudor domain. J Biol Chem (2011) 0.83

Extending the size of protein-RNA complexes studied by nuclear magnetic resonance spectroscopy. Chembiochem (2005) 0.82

Single- and dual-parameter FRET kinase probes based on pleckstrin. Nat Protoc (2006) 0.82

Probing lipid- and drug-binding domains with fluorescent dyes. Bioorg Med Chem (2007) 0.81

Structure and RNA recognition by the snRNA and snoRNA transport factor PHAX. RNA (2010) 0.80

Translational repression of thymidylate synthase by targeting its mRNA. Nucleic Acids Res (2013) 0.80

¹H, ¹³C, ¹⁵N and ³¹P chemical shift assignments of a human Xist RNA A-repeat tetraloop hairpin essential for X-chromosome inactivation. Biomol NMR Assign (2011) 0.79

Local structure and anisotropic backbone dynamics from cross-correlated NMR relaxation in proteins. Angew Chem Int Ed Engl (2005) 0.79

CH-π "T-shape" interaction with histidine explains binding of aromatic galactosides to Pseudomonas aeruginosa lectin LecA. ACS Chem Biol (2013) 0.79

The dynamic duo: combining NMR and small angle scattering in structural biology. Protein Sci (2014) 0.79

De novo structure determination from residual dipolar couplings by NMR spectroscopy. Angew Chem Int Ed Engl (2002) 0.79

NMR Assignment Reveals an alpha-Helical Fold for the F-Actin Binding Domain of Human Bcr-Abl/c-Abl. J Biomol NMR (2005) 0.78

Definition of domain boundaries and crystallization of the SMN Tudor domain. Acta Crystallogr D Biol Crystallogr (2003) 0.78

New NMR assignment 1H, 13C, and 15N assignment of the second PH domain of human pleckstrin (234-350). J Biomol NMR (2006) 0.77

Retraction notice to "Structure and functional analysis of the MYND domain" [J. Mol. Biol. (2006) 358, 498-508]. J Mol Biol (2008) 0.77

Functional role of the flexible N-terminal extension of FKBP38 in catalysis. Sci Rep (2013) 0.77

Production of a de-novo designed antimicrobial peptide in Nicotiana benthamiana. Plant Mol Biol (2012) 0.77

Detection of hydrogen bonds in dynamic regions of RNA by NMR spectroscopy. Curr Protoc Nucleic Acid Chem (2014) 0.77

Structural analysis of protein interfaces from 13C direct-detected paramagnetic relaxation enhancements. J Am Chem Soc (2010) 0.77

1H, 13C and 15N chemical shift assignments of IPSEΔNLS. Biomol NMR Assign (2011) 0.76

Artificial accelerators of the molecular chaperone Hsp90 facilitate rate-limiting conformational transitions. Angew Chem Int Ed Engl (2014) 0.76

Backbone 1H, 13C, and 15N resonance assignments of the N-terminal domain of FKBP38 (FKBP38NTD). J Biomol NMR (2006) 0.76

Functional and structural characterization of a novel member of the natriuretic family of peptides from the venom of Pseudocerastes persicus. FEBS Lett (2004) 0.76

Repeat recognition. Structure (2010) 0.75

Breaking the protein-RNA recognition code. Cell Cycle (2014) 0.75

Switching off the switch. Structure (2003) 0.75

Speeding up biomolecular NMR spectroscopy. Angew Chem Int Ed Engl (2004) 0.75

Studying weak and dynamic interactions of posttranslationally modified proteins using expressed protein ligation. ACS Chem Biol (2013) 0.75