Published in J Biol Chem on October 29, 2008
Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step. EMBO J (2013) 1.14
Phosphorylation of S776 and 14-3-3 binding modulate ataxin-1 interaction with splicing factors. PLoS One (2009) 1.11
Far upstream element binding protein 1: a commander of transcription, translation and beyond. Oncogene (2012) 1.08
Molecular basis of FIR-mediated c-myc transcriptional control. Nat Struct Mol Biol (2010) 1.07
Analysis of in situ pre-mRNA targets of human splicing factor SF1 reveals a function in alternative splicing. Nucleic Acids Res (2010) 0.99
The C-terminal RNA binding motif of HuR is a multi-functional domain leading to HuR oligomerization and binding to U-rich RNA targets. RNA Biol (2014) 0.91
Interactome for auxiliary splicing factor U2AF(65) suggests diverse roles. Biochim Biophys Acta (2009) 0.86
A broadly applicable high-throughput screening strategy identifies new regulators of Dlg4 (Psd-95) alternative splicing. Genome Res (2013) 0.85
Cancer-relevant splicing factor CAPERα engages the essential splicing factor SF3b155 in a specific ternary complex. J Biol Chem (2014) 0.85
A novel protein-protein interaction in the RES (REtention and Splicing) complex. J Biol Chem (2014) 0.84
Structure of phosphorylated SF1 bound to U2AF⁶⁵ in an essential splicing factor complex. Structure (2012) 0.84
Haploinsufficiency of the c-myc transcriptional repressor FIR, as a dominant negative-alternative splicing model, promoted p53-dependent T-cell acute lymphoblastic leukemia progression by activating Notch1. Oncotarget (2015) 0.83
Identification of U2AF(35)-dependent exons by RNA-Seq reveals a link between 3' splice-site organization and activity of U2AF-related proteins. Nucleic Acids Res (2015) 0.82
Non-transmissible Sendai virus vector encoding c-myc suppressor FBP-interacting repressor for cancer therapy. World J Gastroenterol (2014) 0.81
Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1. Nucleic Acids Res (2014) 0.80
UHM-ULM interactions in the RBM39-U2AF65 splicing-factor complex. Acta Crystallogr D Struct Biol (2016) 0.78
Mammalian splicing factor SF1 interacts with SURP domains of U2 snRNP-associated proteins. Nucleic Acids Res (2015) 0.77
Unmasking the U2AF homology motif family: a bona fide protein-protein interaction motif in disguise. RNA (2016) 0.76
RNA and Proteins: Mutual Respect. F1000Res (2017) 0.75
Alternative splicing of U2AF1 reveals a shared repression mechanism for duplicated exons. Nucleic Acids Res (2016) 0.75
FIR haplodeficiency promotes splicing to pyruvate kinase M2 in mice thymic lymphoma tissues revealed by six-plex tandem mass tag quantitative proteomic analysis. Oncotarget (2017) 0.75
Involvement of PUF60 in Transcriptional and Post-transcriptional Regulation of Hepatitis B Virus Pregenomic RNA Expression. Sci Rep (2017) 0.75
Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature (2002) 45.19
Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res (2003) 38.75
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol (2011) 28.61
Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinformatics (2002) 9.86
Protein disorder prediction: implications for structural proteomics. Structure (2003) 7.93
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res (2003) 6.86
GlobPlot: Exploring protein sequences for globularity and disorder. Nucleic Acids Res (2003) 5.90
Structural basis for the autoinhibition of c-Abl tyrosine kinase. Cell (2003) 5.44
Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain. Nature (2003) 4.92
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol Cell (2002) 4.78
Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. BMC Bioinformatics (2004) 4.44
Nucleic acid 3'-end recognition by the Argonaute2 PAZ domain. Nat Struct Mol Biol (2004) 4.38
Proteome organization in a genome-reduced bacterium. Science (2009) 3.97
A conserved motif in Argonaute-interacting proteins mediates functional interactions through the Argonaute PIWI domain. Nat Struct Mol Biol (2007) 3.62
Phospho.ELM: a database of phosphorylation sites--update 2008. Nucleic Acids Res (2007) 3.47
Splicing regulates NAD metabolite binding to histone macroH2A. Nat Struct Mol Biol (2005) 3.40
Phospho.ELM: a database of phosphorylation sites--update 2011. Nucleic Acids Res (2010) 3.38
Systematic discovery of new recognition peptides mediating protein interaction networks. PLoS Biol (2005) 3.28
A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation. Nat Struct Mol Biol (2009) 3.26
Ancient protostome origin of chemosensory ionotropic glutamate receptors and the evolution of insect taste and olfaction. PLoS Genet (2010) 3.03
ELM--the database of eukaryotic linear motifs. Nucleic Acids Res (2011) 2.84
Plant UVR8 photoreceptor senses UV-B by tryptophan-mediated disruption of cross-dimer salt bridges. Science (2012) 2.80
Proteasomal and genetic inactivation of the NF1 tumor suppressor in gliomagenesis. Cancer Cell (2009) 2.73
ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Res (2009) 2.59
Intron removal requires proofreading of U2AF/3' splice site recognition by DEK. Science (2006) 2.52
HDAC6-p97/VCP controlled polyubiquitin chain turnover. EMBO J (2006) 2.52
Understanding eukaryotic linear motifs and their role in cell signaling and regulation. Front Biosci (2008) 2.45
Attributes of short linear motifs. Mol Biosyst (2011) 2.32
The eukaryotic linear motif resource ELM: 10 years and counting. Nucleic Acids Res (2013) 2.25
Nucleosome binding by the bromodomain and PHD finger of the transcriptional cofactor p300. J Mol Biol (2004) 2.23
NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1. Nat Struct Mol Biol (2010) 2.12
Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex. Mol Cell (2008) 2.09
ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome. Nat Methods (2007) 2.04
Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP. Mol Cell (2003) 2.00
Malectin: a novel carbohydrate-binding protein of the endoplasmic reticulum and a candidate player in the early steps of protein N-glycosylation. Mol Biol Cell (2008) 1.94
How viruses hijack cell regulation. Trends Biochem Sci (2010) 1.93
Computer-aided design of a PDZ domain to recognize new target sequences. Nat Struct Biol (2002) 1.89
Determinants of conformational dimerization of Mad2 and its inhibition by p31comet. EMBO J (2006) 1.89
High-resolution X-ray and NMR structures of the SMN Tudor domain: conformational variation in the binding site for symmetrically dimethylated arginine residues. J Mol Biol (2003) 1.84
Tyrosine phosphorylation controls brassinosteroid receptor activation by triggering membrane release of its kinase inhibitor. Genes Dev (2011) 1.81
Anopheles gambiae SRPN2 facilitates midgut invasion by the malaria parasite Plasmodium berghei. EMBO Rep (2005) 1.70
Structural basis for the reversible activation of a Rho protein by the bacterial toxin SopE. EMBO J (2002) 1.64
The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double-stranded RNA recognition. EMBO Rep (2005) 1.63
Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases. Science (2013) 1.63
Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF. Nature (2011) 1.57
The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module. Proc Natl Acad Sci U S A (2008) 1.50
Mutations in SYNGAP1 cause intellectual disability, autism, and a specific form of epilepsy by inducing haploinsufficiency. Hum Mutat (2012) 1.50
NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease. J Biol Chem (2005) 1.47
A family of macrodomain proteins reverses cellular mono-ADP-ribosylation. Nat Struct Mol Biol (2013) 1.47
Structural basis of histone H2A-H2B recognition by the essential chaperone FACT. Nature (2013) 1.47
Structural basis of single-stranded RNA recognition. Acc Chem Res (2004) 1.46
The solubility and stability of recombinant proteins are increased by their fusion to NusA. Biochem Biophys Res Commun (2004) 1.45
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium. Mol Syst Biol (2012) 1.44
Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2. EMBO J (2009) 1.44
Catalytic core of a membrane-associated eukaryotic polyphosphate polymerase. Science (2009) 1.44
A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae. Mol Syst Biol (2010) 1.43
Molecular recognition of histone lysine methylation by the Polycomb group repressor dSfmbt. EMBO J (2009) 1.42
Muscle RING-finger protein-1 (MuRF1) as a connector of muscle energy metabolism and protein synthesis. J Mol Biol (2007) 1.41
U2AF-homology motif interactions are required for alternative splicing regulation by SPF45. Nat Struct Mol Biol (2007) 1.38
A Proteome-wide screen for mammalian SxIP motif-containing microtubule plus-end tracking proteins. Curr Biol (2012) 1.38
Recognition of a functional peroxisome type 1 target by the dynamic import receptor pex5p. Mol Cell (2006) 1.37
Structural insights into the cyclin T1-Tat-TAR RNA transcription activation complex from EIAV. Nat Struct Mol Biol (2008) 1.36
Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40. J Mol Biol (2002) 1.36
Structural and functional analyses of methyl-lysine binding by the malignant brain tumour repeat protein Sex comb on midleg. EMBO Rep (2007) 1.36
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. BMC Bioinformatics (2008) 1.35
Structural basis for translational stalling by human cytomegalovirus and fungal arginine attenuator peptide. Mol Cell (2010) 1.35
A novel bipartite phospholipid-binding module in the neurofibromatosis type 1 protein. EMBO Rep (2006) 1.33
Structural insights into the target specificity of plant invertase and pectin methylesterase inhibitory proteins. Plant Cell (2004) 1.33
The C2 domain of SynGAP is essential for stimulation of the Rap GTPase reaction. EMBO Rep (2008) 1.31
Motif switches: decision-making in cell regulation. Curr Opin Struct Biol (2012) 1.31
Screening of fusion partners for high yield expression and purification of bioactive viscotoxins. Protein Expr Purif (2008) 1.31
Solution structure analysis of the HPV16 E6 oncoprotein reveals a self-association mechanism required for E6-mediated degradation of p53. Structure (2012) 1.30
Structural basis for dimethylarginine recognition by the Tudor domains of human SMN and SPF30 proteins. Nat Struct Mol Biol (2011) 1.29
Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering. Opt Express (2011) 1.27
The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization. RNA (2011) 1.26
Phosphoinositides regulate membrane-dependent actin assembly by latex bead phagosomes. Mol Biol Cell (2002) 1.25
X-ray crystallographic and NMR studies of the third KH domain of hnRNP K in complex with single-stranded nucleic acids. Structure (2005) 1.24
Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation. Chem Rev (2014) 1.24
Pyrophosphate-producing protein dephosphorylation by HPr kinase/phosphorylase: a relic of early life? Proc Natl Acad Sci U S A (2002) 1.23
Tackling drought stress: receptor-like kinases present new approaches. Plant Cell (2012) 1.23
Structural basis for the cytoskeletal association of Bcr-Abl/c-Abl. Mol Cell (2005) 1.21
hnRNP A1 proofreads 3' splice site recognition by U2AF. Mol Cell (2012) 1.19
Topography for independent binding of alpha-helical and PPII-helical ligands to a peroxisomal SH3 domain. Mol Cell (2002) 1.17
A structure filter for the Eukaryotic Linear Motif Resource. BMC Bioinformatics (2009) 1.16